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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2015 May 9;71(Pt 6):o382. doi: 10.1107/S2056989015008671

Crystal structure of 2-(p-tol­yl)-6-(tri­fluoro­meth­yl)benzo[b]thio­phene-3-carbo­nitrile

N C Sandhya a, S Naveen b, N K Lokanath c, S Ananda a,*
PMCID: PMC4459355  PMID: 26090178

Abstract

In the title compound, C17H10F3NS, the dihedral angle between the fused benzo­thio­phene ring system (r.m.s. deviation = 0.042 Å) and the benzene ring is 29.78 (11)°. The crystal structure features C—H⋯F and very weak C—H⋯N hydrogen bonds, which generate (001) sheets.

Keywords: crystal structure, benzo[b]thio­phene, hydrogen bonding

Related literature  

For background to benzo­thio­phene derivatives, see: Bettinetti et al. (2002); Roberts & Hartley (2004).graphic file with name e-71-0o382-scheme1.jpg

Experimental  

Crystal data  

  • C17H10F3NS

  • M r = 317.33

  • Monoclinic, Inline graphic

  • a = 13.7576 (5) Å

  • b = 14.5343 (6) Å

  • c = 7.1353 (3) Å

  • β = 92.817 (3)°

  • V = 1425.03 (10) Å3

  • Z = 4

  • Cu Kα radiation

  • μ = 2.29 mm−1

  • T = 293 K

  • 0.30 × 0.27 × 0.25 mm

Data collection  

  • Bruker X8 Proteum diffractometer

  • Absorption correction: multi-scan (SADABS; Bruker, 2013) T min = 0.546, T max = 0.598

  • 7045 measured reflections

  • 2316 independent reflections

  • 1860 reflections with I > 2σ(I)

  • R int = 0.063

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.053

  • wR(F 2) = 0.141

  • S = 1.06

  • 2316 reflections

  • 200 parameters

  • H-atom parameters constrained

  • Δρmax = 0.43 e Å−3

  • Δρmin = −0.40 e Å−3

Data collection: APEX2 (Bruker, 2013); cell refinement: SAINT (Bruker, 2013); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015008671/hb7416sup1.cif

e-71-0o382-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008671/hb7416Isup2.hkl

e-71-0o382-Isup2.hkl (113.9KB, hkl)

Supporting information file. DOI: 10.1107/S2056989015008671/hb7416Isup3.cml

. DOI: 10.1107/S2056989015008671/hb7416fig1.tif

A view of the title compound with displacement ellipsoids drawn at the 50% probability level.

a . DOI: 10.1107/S2056989015008671/hb7416fig2.tif

A view along the a axis of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines (see Table 2 for details).

CCDC reference: 1063141

Additional supporting information: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (, ).

DHA DH HA D A DHA
C3H3N11i 0.93 2.62 3.411(4) 143
C22H22CF15ii 0.96 2.45 3.375(4) 162

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors are thankful to Institution of Excellence, University of Mysore, Mysore, for providing the single-crystal X-ray diffraction facility.

supplementary crystallographic information

S1. Comment

Benzo[b]thiophene derivatives are important heterocyclic compounds because of their various applications in medicinal chemistry. They represent an important heterocyclic core and are shown to display a range of promising pharmacological properties such as antipsychotic, antidepressive, antithrombolytic, dopamine receptor antagonist and 5-lipoxygenase inhibitor. Number of 2-arylbenzo[b]thiophene derivatives have indeed, these sulfur heterocycles are essential components of clinically important drugs such as Clopidogrel (Bettinetti et al., 2002), Raloxifene (Roberts & Hartley, 2004) and Zileuton.

S2. Experimental

To a solution of 2-(2-chlorophenyl)acetonitrile (1.0 mmol), methyl benzodithioate (1.0 mmol) in DMF (2 ml), K3PO4 (2.0 mmol), pivalic acid (1.5 mmol), cuprous iodide (0.2 mmol) were added. The mixture was stirred at 80°C and progress was monitored by TLC. When the dithioesters could no longer be detected, the reaction mixture was extracted with EtOAc (3 × 10 ml). The organic layer was dried over anhydrous Na2SO4. The solvent was then removed under reduced pressure and the residue was purified by silica gel chromatography. White solid single crystals were obtained from slow evaporation of its solvent.

S3. Refinement

All H atoms were positioned geometrically and allowed to ride on their parent atom, with C–H = 0.93–0.97 Å, and with Uiso(H) = 1.2–1.5Ueq(C).

Figures

Fig. 1.

Fig. 1.

A view of the title compound with displacement ellipsoids drawn at the 50% probability level.

Fig. 2.

Fig. 2.

A view along the a axis of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines (see Table 2 for details).

Crystal data

C17H10F3NS F(000) = 648
Mr = 317.33 Dx = 1.479 Mg m3
Monoclinic, P21/c Cu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ybc Cell parameters from 2316 reflections
a = 13.7576 (5) Å θ = 6.4–64.7°
b = 14.5343 (6) Å µ = 2.29 mm1
c = 7.1353 (3) Å T = 293 K
β = 92.817 (3)° Block, colourless
V = 1425.03 (10) Å3 0.30 × 0.27 × 0.25 mm
Z = 4

Data collection

Bruker X8 Proteum diffractometer 2316 independent reflections
Radiation source: Rotating Anode 1860 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.063
Detector resolution: 18.4 pixels mm-1 θmax = 64.7°, θmin = 6.4°
φ and ω scans h = −15→15
Absorption correction: multi-scan (SADABS; Bruker, 2013) k = −15→16
Tmin = 0.546, Tmax = 0.598 l = −8→6
7045 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141 H-atom parameters constrained
S = 1.06 w = 1/[σ2(Fo2) + (0.0726P)2 + 0.2459P] where P = (Fo2 + 2Fc2)/3
2316 reflections (Δ/σ)max < 0.001
200 parameters Δρmax = 0.43 e Å3
0 restraints Δρmin = −0.40 e Å3

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
S1 0.51842 (5) 0.17833 (5) 0.23250 (10) 0.0214 (2)
F13 0.10569 (13) −0.01265 (15) 0.0632 (4) 0.0518 (8)
F14 0.14077 (13) 0.11887 (16) −0.0469 (3) 0.0450 (7)
F15 0.11752 (13) 0.10360 (17) 0.2439 (3) 0.0484 (8)
N11 0.64047 (19) −0.14957 (19) 0.3600 (4) 0.0297 (9)
C2 0.4251 (2) 0.0996 (2) 0.1944 (4) 0.0202 (9)
C3 0.3272 (2) 0.1178 (2) 0.1485 (4) 0.0212 (9)
C4 0.2634 (2) 0.0444 (2) 0.1373 (4) 0.0210 (9)
C5 0.2957 (2) −0.0459 (2) 0.1679 (4) 0.0217 (9)
C6 0.3920 (2) −0.0643 (2) 0.2103 (4) 0.0203 (8)
C7 0.4583 (2) 0.0087 (2) 0.2249 (4) 0.0178 (8)
C8 0.5601 (2) 0.0069 (2) 0.2816 (4) 0.0174 (8)
C9 0.6018 (2) 0.0928 (2) 0.2949 (4) 0.0183 (8)
C10 0.6079 (2) −0.0785 (2) 0.3267 (4) 0.0204 (9)
C12 0.1574 (2) 0.0636 (2) 0.0993 (4) 0.0253 (9)
C16 0.7014 (2) 0.1180 (2) 0.3613 (4) 0.0182 (8)
C17 0.7798 (2) 0.0588 (2) 0.3430 (4) 0.0198 (9)
C18 0.8717 (2) 0.0826 (2) 0.4144 (4) 0.0236 (9)
C19 0.8890 (2) 0.1655 (2) 0.5074 (4) 0.0235 (9)
C20 0.8107 (2) 0.2255 (2) 0.5220 (4) 0.0217 (9)
C21 0.7190 (2) 0.2025 (2) 0.4506 (4) 0.0194 (8)
C22 0.9878 (2) 0.1887 (2) 0.5939 (5) 0.0306 (10)
H3 0.30560 0.17760 0.12600 0.0250*
H5 0.25120 −0.09410 0.15940 0.0260*
H6 0.41310 −0.12450 0.22910 0.0240*
H17 0.77040 0.00260 0.28230 0.0240*
H18 0.92320 0.04210 0.39990 0.0280*
H20 0.82050 0.28200 0.58110 0.0260*
H21 0.66800 0.24390 0.46190 0.0230*
H22A 0.99640 0.15870 0.71340 0.0460*
H22B 0.99300 0.25410 0.61070 0.0460*
H22C 1.03700 0.16810 0.51280 0.0460*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
S1 0.0194 (4) 0.0164 (4) 0.0281 (4) −0.0001 (3) −0.0009 (3) 0.0010 (3)
F13 0.0215 (9) 0.0385 (13) 0.0941 (17) −0.0028 (9) −0.0107 (10) −0.0047 (12)
F14 0.0293 (10) 0.0607 (15) 0.0442 (12) 0.0123 (10) −0.0052 (9) 0.0178 (11)
F15 0.0285 (10) 0.0782 (17) 0.0390 (11) 0.0161 (10) 0.0059 (9) −0.0160 (11)
N11 0.0321 (15) 0.0196 (16) 0.0369 (16) 0.0022 (12) −0.0027 (12) 0.0019 (13)
C2 0.0237 (15) 0.0198 (16) 0.0171 (14) −0.0014 (12) 0.0024 (11) −0.0003 (13)
C3 0.0214 (14) 0.0211 (17) 0.0210 (14) 0.0051 (12) 0.0011 (12) −0.0005 (13)
C4 0.0223 (15) 0.0258 (17) 0.0149 (13) −0.0007 (13) 0.0005 (11) −0.0005 (13)
C5 0.0244 (15) 0.0211 (17) 0.0196 (14) −0.0038 (12) −0.0001 (12) −0.0010 (13)
C6 0.0268 (15) 0.0145 (15) 0.0198 (14) −0.0004 (12) 0.0026 (12) 0.0003 (12)
C7 0.0216 (14) 0.0207 (16) 0.0111 (13) 0.0011 (12) 0.0023 (11) 0.0016 (12)
C8 0.0203 (14) 0.0170 (15) 0.0149 (13) 0.0012 (12) 0.0017 (11) −0.0007 (12)
C9 0.0220 (14) 0.0191 (16) 0.0142 (13) 0.0006 (12) 0.0041 (11) −0.0006 (12)
C10 0.0199 (14) 0.0220 (18) 0.0191 (15) −0.0039 (13) −0.0011 (12) −0.0006 (13)
C12 0.0240 (15) 0.0254 (18) 0.0265 (16) 0.0002 (13) 0.0002 (13) −0.0017 (14)
C16 0.0206 (14) 0.0174 (16) 0.0166 (13) −0.0004 (12) 0.0005 (11) 0.0015 (12)
C17 0.0219 (15) 0.0169 (16) 0.0209 (14) −0.0001 (12) 0.0034 (12) −0.0013 (13)
C18 0.0229 (15) 0.0240 (17) 0.0241 (15) 0.0042 (13) 0.0026 (12) −0.0007 (13)
C19 0.0237 (15) 0.0293 (18) 0.0175 (14) −0.0019 (13) 0.0003 (12) 0.0033 (13)
C20 0.0240 (15) 0.0223 (17) 0.0187 (14) −0.0044 (13) 0.0011 (12) −0.0009 (13)
C21 0.0204 (14) 0.0186 (16) 0.0195 (14) 0.0003 (12) 0.0032 (11) 0.0022 (13)
C22 0.0251 (16) 0.037 (2) 0.0295 (16) 0.0014 (14) −0.0015 (13) −0.0015 (16)

Geometric parameters (Å, º)

S1—C2 1.731 (3) C16—C17 1.391 (4)
S1—C9 1.735 (3) C16—C21 1.399 (4)
F13—C12 1.335 (4) C17—C18 1.384 (4)
F14—C12 1.328 (4) C18—C19 1.390 (4)
F15—C12 1.326 (4) C19—C20 1.394 (4)
N11—C10 1.146 (4) C19—C22 1.503 (4)
C2—C3 1.396 (4) C20—C21 1.378 (4)
C2—C7 1.411 (4) C3—H3 0.9300
C3—C4 1.381 (4) C5—H5 0.9300
C4—C5 1.399 (4) C6—H6 0.9300
C4—C12 1.496 (4) C17—H17 0.9300
C5—C6 1.371 (4) C18—H18 0.9300
C6—C7 1.400 (4) C20—H20 0.9300
C7—C8 1.439 (4) C21—H21 0.9300
C8—C9 1.375 (4) C22—H22A 0.9600
C8—C10 1.434 (4) C22—H22B 0.9600
C9—C16 1.474 (4) C22—H22C 0.9600
C2—S1—C9 92.44 (14) C17—C16—C21 117.9 (3)
S1—C2—C3 127.7 (2) C16—C17—C18 120.6 (3)
S1—C2—C7 111.3 (2) C17—C18—C19 121.6 (3)
C3—C2—C7 121.0 (3) C18—C19—C20 117.6 (3)
C2—C3—C4 118.1 (3) C18—C19—C22 121.4 (3)
C3—C4—C5 121.3 (3) C20—C19—C22 121.0 (3)
C3—C4—C12 118.5 (3) C19—C20—C21 121.2 (3)
C5—C4—C12 120.2 (3) C16—C21—C20 121.1 (3)
C4—C5—C6 120.9 (3) C2—C3—H3 121.00
C5—C6—C7 119.2 (3) C4—C3—H3 121.00
C2—C7—C6 119.6 (3) C4—C5—H5 120.00
C2—C7—C8 111.3 (2) C6—C5—H5 120.00
C6—C7—C8 129.0 (3) C5—C6—H6 120.00
C7—C8—C9 113.6 (3) C7—C6—H6 120.00
C7—C8—C10 120.6 (3) C16—C17—H17 120.00
C9—C8—C10 125.8 (3) C18—C17—H17 120.00
S1—C9—C8 111.4 (2) C17—C18—H18 119.00
S1—C9—C16 119.8 (2) C19—C18—H18 119.00
C8—C9—C16 128.7 (3) C19—C20—H20 119.00
N11—C10—C8 175.6 (3) C21—C20—H20 119.00
F13—C12—F14 106.3 (2) C16—C21—H21 120.00
F13—C12—F15 106.1 (2) C20—C21—H21 119.00
F13—C12—C4 112.7 (2) C19—C22—H22A 109.00
F14—C12—F15 106.5 (2) C19—C22—H22B 109.00
F14—C12—C4 112.6 (2) C19—C22—H22C 109.00
F15—C12—C4 112.2 (2) H22A—C22—H22B 109.00
C9—C16—C17 121.9 (3) H22A—C22—H22C 110.00
C9—C16—C21 120.1 (3) H22B—C22—H22C 109.00
C9—S1—C2—C3 175.6 (3) C2—C7—C8—C9 0.5 (4)
C9—S1—C2—C7 −1.4 (2) C2—C7—C8—C10 177.7 (3)
C2—S1—C9—C8 1.7 (2) C6—C7—C8—C9 −175.0 (3)
C2—S1—C9—C16 −175.3 (2) C6—C7—C8—C10 2.2 (5)
S1—C2—C3—C4 −175.5 (2) C7—C8—C9—S1 −1.6 (3)
C7—C2—C3—C4 1.2 (4) C7—C8—C9—C16 175.2 (3)
S1—C2—C7—C6 176.7 (2) C10—C8—C9—S1 −178.6 (2)
S1—C2—C7—C8 0.8 (3) C10—C8—C9—C16 −1.8 (5)
C3—C2—C7—C6 −0.5 (4) S1—C9—C16—C17 −154.1 (2)
C3—C2—C7—C8 −176.4 (3) S1—C9—C16—C21 27.8 (4)
C2—C3—C4—C5 −1.0 (4) C8—C9—C16—C17 29.4 (5)
C2—C3—C4—C12 176.5 (3) C8—C9—C16—C21 −148.7 (3)
C3—C4—C5—C6 0.1 (4) C9—C16—C17—C18 −177.0 (3)
C12—C4—C5—C6 −177.4 (3) C21—C16—C17—C18 1.2 (4)
C3—C4—C12—F13 170.3 (3) C9—C16—C21—C20 176.8 (3)
C3—C4—C12—F14 50.1 (4) C17—C16—C21—C20 −1.5 (4)
C3—C4—C12—F15 −70.0 (3) C16—C17—C18—C19 0.4 (4)
C5—C4—C12—F13 −12.2 (4) C17—C18—C19—C20 −1.8 (4)
C5—C4—C12—F14 −132.4 (3) C17—C18—C19—C22 176.6 (3)
C5—C4—C12—F15 107.5 (3) C18—C19—C20—C21 1.5 (4)
C4—C5—C6—C7 0.7 (4) C22—C19—C20—C21 −176.9 (3)
C5—C6—C7—C2 −0.5 (4) C19—C20—C21—C16 0.1 (4)
C5—C6—C7—C8 174.6 (3)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C3—H3···N11i 0.93 2.62 3.411 (4) 143
C22—H22C···F15ii 0.96 2.45 3.375 (4) 162

Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x+1, y, z.

Footnotes

Supporting information for this paper is available from the IUCr electronic archives (Reference: HB7416).

References

  1. Bettinetti, L., Schlotter, K., Hübner, H. & Gmeiner, P. (2002). J. Med. Chem. 45, 4594–4597. [DOI] [PubMed]
  2. Bruker (2013). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Roberts, C. F. & Hartley, R. C. (2004). J. Org. Chem. 69, 6145–6148. [DOI] [PubMed]
  4. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  5. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015008671/hb7416sup1.cif

e-71-0o382-sup1.cif (18.3KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015008671/hb7416Isup2.hkl

e-71-0o382-Isup2.hkl (113.9KB, hkl)

Supporting information file. DOI: 10.1107/S2056989015008671/hb7416Isup3.cml

. DOI: 10.1107/S2056989015008671/hb7416fig1.tif

A view of the title compound with displacement ellipsoids drawn at the 50% probability level.

a . DOI: 10.1107/S2056989015008671/hb7416fig2.tif

A view along the a axis of the crystal packing of the title compound. Hydrogen bonds are shown as dashed lines (see Table 2 for details).

CCDC reference: 1063141

Additional supporting information: crystallographic information; 3D view; checkCIF report


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