Abstract
Understanding circuit function requires the characterization of component neurons and their neurotransmitters. Previous work on radula protraction in the Aplysia feeding circuit demonstrated that critical neurons initiate feeding via cholinergic excitation. In contrast, it is less clear how retraction is mediated at the interneuronal level. In particular, glutamate involvement was suggested, but was not directly confirmed. Here we study a suspected glutamatergic retraction interneuron, B64. We used the representational difference analysis (RDA) method to successfully clone an Aplysia vesicular glutamate transporter (ApVGLUT) from B64 and from a glutamatergic motor neuron B38. Previously, RDA was used to characterize novel neuropeptides. Here we demonstrate its utility for characterizing other types of molecules. Bioinformatics suggests that ApVGLUT is more closely related to mammalian VGLUTs than to Drosophila and Caenorhabditis elegans VGLUTs. We expressed ApVGLUT in a cell line, and demonstrated that it indeed transports glutamate in an ATP and proton gradient-dependent manner. We mapped the ApVGLUT distribution in the CNS using in situ hybridization and immunocytochemistry. Further, we demonstrated that B64 is ApVGLUT positive, supporting the idea that it is glutamatergic. Although glutamate is primarily an excitatory transmitter in the mammalian CNS, B64 elicits inhibitory PSPs in protraction neurons to terminate protraction and excitatory PSPs in retraction neurons to maintain retraction. Pharmacological data indicated that both types of PSPs are mediated by glutamate. Thus, glutamate mediates the dual function of B64 in Aplysia. More generally, our systematic approaches based on RDA may facilitate analyses of transmitter actions in small circuits with identifiable neurons.
Keywords: Aplysia, central pattern generator, feeding, glutamate, interneuron, vesicular glutamate transporter
Introduction
Circuit operation depends on the interplay between circuit elements and their neurotransmitters, necessitating the continued need to localize neurotransmitters to specific neurons and characterize their actions. A common approach to study transmitter actions is to use pharmacological reagents. Another important approach is to identify molecules involved in neurotransmission, e.g., vesicular transporters of specific transmitters. The two approaches require different techniques and are often separately implemented. Here we sought to combine the two by studying identified neurons in the Aplysia feeding circuit (Cropper et al., 2004; Jing, 2009). To characterize a vesicular transporter we used our recently described representational difference analysis (RDA) method (Jing et al., 2010). We studied glutamatergic neurons, which are of particular interest, because although glutamate is the primary excitatory transmitter in the mammalian brain (Jahr and Lester, 1992), in Aplysia this type of function is also subserved by ACh. Indeed, in the Aplysia feeding circuit, ACh appears to serve as the primary excitatory transmitter (Hurwitz et al., 2003), which makes glutamate's role unclear.
RDA exploits the fact that two identified neurons, a tester and a driver, express different complements of mRNA. It uses a subtraction method to reveal mRNAs encoding proteins present only in the neuron of interest, the tester. Previously, we successfully used RDA to identify several neuropeptides (Jing et al., 2010; Romanova et al., 2012). Here we sought to determine whether RDA would also be effective for detecting large proteins, which are less abundant than peptides. We studied the interneuron B64 (Hurwitz and Susswein, 1996) and a glutamatergic motoneuron B38 (Fox and Lloyd, 1999). We hypothesized that B64 was glutamatergic because a homologous neuron in the mollusc Lymnaea (Brierley et al., 1997) appears to be glutamatergic based on its pharmacological profile. We performed RDA using B38 and B64 neurons as testers, and identified one clone encoding a protein highly homologous to mammalian VGLUTs. We named the identified molecule Aplysia VGLUT (ApVGLUT).
Vesicular glutamate transporters have been most extensively studied in mammals (El Mestikawy et al., 2011; Omote and Moriyama, 2013). There are three types of mammalian VGLUTs—VGLUT1–3. In invertebrates, there are reports of a single VGLUT in Caenorhabditis elegans, Drosophila, and Lymnaea (Lee et al., 1999; Daniels et al., 2004; Hatakeyama et al., 2010; Serrano-Saiz et al., 2013). Although examination of genomic databases suggests that three types of VGLUT may be present in oyster and Aplysia, presently the expression and functions of the predicted molecules remain to be verified. Indeed, despite the putative identification of VGLUTs in a dozen invertebrates, there is no direct evidence showing that invertebrate VGLUTs actually transport glutamate. Here we show that ApVGLUT indeed functions as a glutamate transporter and that interneuron B64 is ApVGLUT positive. Further, pharmacological data indicate that B64 synaptic potentials are mediated by glutamate. Our combined approaches thus offer an effective means to study actions of transmitters, especially small-molecule transmitters like glutamate, in small circuits. Our study also has implications for understanding the structural and functional evolution of VGLUTs.
Materials and Methods
Subjects and reagents.
Experiments were performed on Aplysia californica (100–250 g) obtained from Marinus. Aplysia are hermaphroditic (i.e., each animal has reproductive organs normally associated with both male and female sexes). Animals were maintained in circulating artificial seawater (ASW) at 14–16°C. They were anesthetized by injection of 333 mm isotonic MgCl2 (50% of body weight), and specific ganglia were dissected out and maintained in ASW containing the following (in mm): 460 NaCl, 10 KCl, 55 MgCl2, 11 CaCl2, and 10 HEPES buffer, pH 7.6, in a dish lined with Sylgard (Dow Corning). All chemicals were purchased from Sigma unless otherwise stated.
RDA procedure
Recently we modified the RDA approach (Lisitsyn et al., 1993; Hubank and Schatz, 1994) to identify novel peptides from single identified neurons in the Aplysia CNS, as described in detail previously (Jing et al., 2010).
Here we extended the procedure to identify proteins larger than neuropeptides. In brief, the entire procedure can be divided into three steps (Fig. 1): (1) Isolation of two types of identified cells where the first is the cell of interest, or “‘tester,” whose proteins are to be identified. The second cell, or “‘driver,” is used to subtract sequences that are shared with the tester. The rationale behind this RDA approach is that the tester contains one or more proteins not present in the driver. Multiple cells from each cell type are collected in a solution of ice-cold 50% propylene glycol and 1.2 m NaCl in diethylpyrocarbonate-treated H2O and stored at −80°C. (2) Amplification of the cDNA from the RNA of the tester and the driver is done as described previously (Vilim et al., 2001). (3) RDA (Lisitsyn et al., 1993; Hubank and Schatz, 1994) with the amplified cDNA of the tester and the driver is performed. The cDNAs of the driver and tester were digested with DpnII and the driver cDNA was ligated to R-Bam adaptors, while the tester cDNA was ligated to N-Bam adaptors. DpnII was used to cut cDNA with an average length of 256 bp that contain overhangs to facilitate ligation of adapters for PCR and to clone amplified fragments, because the overhangs are complementary to BamHI digested plasmids. The driver DNA was amplified with biotinylated R-Bam primer and then hybridized with unamplified tester cDNA. Here, we modified the RDA method by including a physical subtraction based on biotinylated driver primers, streptavidin incubation, and phenol/chloroform extraction (Sive and St John, 1988). This procedure removed the driver and with it any tester cDNA that is complementary and bound to it. We then performed the final amplification with tester N-Bam primer to further enrich the protein sequences that were unique to the tester.
Antibodies
To generate antibodies, we selected fragments from the N and C terminal of ApVGLUT. These regions are less conserved and appear to be cytoplasmic. We bacterially expressed fusion recombinant proteins to N and C termini of ApVGLUT. Specifically, N termini (first 75 aa) and C termini (last 88 aa) were expressed with 6Histag in BL21 cells. Proteins were purified using the ion-mobilized affino chromatography method followed by ion exchange chromatography. The purified proteins were used to generate antibodies as previously described (Fujisawa et al., 1999; Furukawa et al., 2001; Li et al., 2001; Sweedler et al., 2002). For each antigen, two male Sprague Dawley rats (250–300 g; Taconic Farms) were immunized by intraperitoneal injections. At days 21 and 42, the rats were boosted by intraperitoneal injections. The animals were killed by decapitation at 49 d, and the blood was harvested and processed for serum. Sera were aliquoted, frozen, and lyophilized or stored at 4°C with EDTA (25 mm final concentration) and thimerosal (0.1% final concentration) added as stabilizers. For antibodies that produced immunostaining, specificity was confirmed by pre-incubation of the primary antibodies with the corresponding synthetic protein segment (100 μm), which abolished the staining.
Glutamate transport by ApVGLUT in a cell line
To determine that ApVGLUT in fact transports glutamate, we expressed ApVGLUT in mammalian cell lines, i.e., COS7 cells from monkey kidney. COS7 cells were maintained in DMEM (Life Technologies) supplemented with fetal bovine serum 10%, l-glutamine, 4.5 g/L glucose, 0.1 mg/L streptomycin, and 100 U/ml penicillin and incubated at 37°C under 5% CO2 (Hayashi et al., 2001).
Expression of ApVGLUT.
ApVGLUT cDNA was subcloned into the HindIII and XbaI sites of expression vector pc DNA 3 (Invitrogen). To amplify DNA we designed primers with restriction sites (HindIII, XbaI) on the ends. The sense primer was as follows: 5′ CCC AAG CTT ATG CCT TTT GGT GCG TTT AAT AAC. The antisense primer was as follows: 5′ GGG TCT AGA CTA GAA GTC TTT CTC GCT GTC GTC. The resultant construct ApVGLUT–pcDNA3 was used to transfect COS7 cells using Effectene Transfection Reagent (Qiagen).
RT-PCR.
Total RNA was isolated from cells grown in 100% confluent dishes (10 cm). Cells were washed with PBS (20 mm Na2HPO4 and 150 mm NaCl, pH 7.2) and then scraped in 4 ml of PBS. They were then centrifuged at 3000 rpm and resuspended in 200 μl of PBS. For isolation, we used a total RNA Pure RNA kit (Boehringer Mannheim; the current name is High Pure RNA Isolation Kit from Roche). Total RNA was transcribed into cDNA by RT Superscript II (Invitrogen) in a final volume of 20 μl. After 2 h at 42°C, the reaction was terminated by heating at 70°C for 30 min. For PCR amplification, 10-fold diluted synthesized cDNA was added to the reaction buffer with dNTPs and specific primers for ApVGLUT. Thirty-five cycles were conducted.
Immunohistochemistry (cultured cells).
Microscope cover glass (Fisher) was used in 12-well plates. Cells were plated with a density of 2 × 104 and grown overnight at 37°C. Cells were washed with PBS and fixed in 4% paraformaldehyde/PBS solution for 40 min at room temperature. They were then washed with PBS for 3 × 10 min and permeabilized with 0.1% Triton in the same buffer for 40 min, followed by incubation in a blocking solution (2% normal goat serum and 0.5% BSA) for 1 h. Incubation with primary antibody against ApVGLUT (1:100 or 1:1000) was performed overnight at 4°C. Cells were washed with a slow rocking motion for 3 × 15 min with the same blocking solution, then incubated with a secondary goat anti-rat rhodamine antibody (1:1000 or 1:2000) for 2 h, and again washed for 3 × 15 min. Immunoreactivity was examined under a Nikon fluorescence microscope.
Measurement of glutamate transport.
For the permeabilization assay, COS7 cells were plated on 35 mm dishes coated with poly-l-lysine with a density of 2.0 × 105 cells per dish and cultured overnight at 37°C. The next day cells were transfected with 2 μg construct ApVGLUT-pcDNA3 per dish.
We measured the COS7 cells' uptake of the radioactively labeled glutamate following digitonin permeabilization of the plasma membrane as previously described (Hayashi et al., 2001). Briefly, after further incubation with ApVGLUT-pcDNA3 for 48 h, ApVGLUT-expressing COS7 cells were rinsed with 1 ml of buffer comprising 20 mm MOPS-Tris, pH 7.0; 0.3 m sucrose; 2 mm magnesium acetate; and 4 mm KCl twice. The cells were then permeabilized for 10 min at 37°C in 0.5 ml of the same buffer containing 10 μm digitonin. The medium was then replaced with fresh buffer containing Tris-ATP at 2 mm in the absence of digitonin. In some experiments, Evans blue, FCCP, bafilomycin A1, nonradioactive glutamate, or l-/d-aspartate was also included in the medium at the specified concentrations. Glutamate uptake was immediately started by the addition of radioactive l-glutamate (2.5 μCi, 0.1 mm) at 37°C. After a 10 min incubation, uptake was terminated by washing the cells with 1 ml of ice-cold 20 mm MOPS-Tris, pH 7.0, containing 0.3 m sucrose. Cells were lysed with 1 ml of 1% SDS and the radioactivity and protein concentration were measured. Glutamate uptake was measured as cpm/μg protein and normalized to the cells expressing ApVGLUT.
In situ hybridization
In situ hybridization (ISH) was performed as described previously (Vilim et al., 2001; Jing et al., 2010). Ganglia were digested with 1% protease type IX (Sigma-Aldrich) in 10 ml of ASW for 3 h at room temperature (with rocking) to facilitate the removal of the sheath. After digestion, ganglia were washed with ASW and fixed overnight at 4°C with 4% paraformaldehyde (Electron Microscopy Sciences) in PBS. Ganglia were then washed, desheathed, and dehydrated in an ascending ethanol series. After rehydration in a descending ethanol series, ganglia were prehybridized for 6 h and then hybridized overnight at 50°C in hybridization buffer (50% formamide, 5 mm EDTA, 5 × SSC, 1 × Denhardt's solution, 0.1% Tween 20, and 0.5 mg/ml yeast tRNA) containing 2 μg/ml digoxigenin-labeled cRNA probes made from ApVGLUT cDNA templates. After washout of the probes, ganglia were then incubated overnight at 4°C with a 1:200 dilution of alkaline phosphatase-conjugated anti-digoxigenin antibody (Roche Molecular Biochemicals) in PBS containing 0.1% Tween 20 (PBT), 0.2% BSA (catalog #A0281; Sigma-Aldrich), and 1% normal goat serum. After washes with PBT to remove unbound antibody, ganglia were washed with detection buffer (100 mm NaCl, 50 mm MgCl2, 0.1% Tween 20, 1 mm levamisol, and 100 mm Tris-HCl, pH 9.5) and developed with 4.5 μl of nitro blue tetrazolium and 3.5 μl of 5-bromo-4-chloro-3-indolyl phosphate (Roche Molecular Biochemicals) in 1 ml of detection buffer. The staining reaction was monitored visually and stopped by washing with PBT when the level of staining was adequate. The stained ganglia were observed and photographed using a fluorescence microscope (Nikon) with epi-illumination against a white background. Photographs were taken with a Nikon Coolpix 990 digital camera, imported into Photoshop, and compiled into figures.
Double labeling of dye-injected B64 interneurons with ISH was performed as above with slight modifications to fluorescently label ApVGLUT mRNA. B64 was physiologically identified and injected with carboxyfluorescein (Jing et al., 2003). The ganglia were hybridized with the same cRNA probe as above. After wash, ganglia were incubated overnight at 4°C with a 1:200 dilution of anti-digoxigenin-rhodamine, Fab fragments (Roche) in PBT, 0.2% BSA, and 1% normal goat serum. Ganglia were then washed with PBS. The preparations were viewed and photographed with a confocal microscope.
Immunocytochemistry
Immunocytochemistry (whole mount) was performed as described previously (Furukawa et al., 2001; Jing et al., 2007). Central ganglia were fixed in 4% paraformaldehyde, 0.2% picric acid, 25% sucrose, and 0.1 m NaH2PO4, pH7.6, for either 3 h at room temperature or overnight at 4°C. After washes with PBS, ganglia were desheathed to expose the neurons, except in ganglia from small animals (10–15 g). All subsequent incubations were done at room temperature. Tissue was permeabilized and blocked by overnight incubation in blocking buffer (10% normal goat serum, 2% Triton X-100, 1% BSA, 154 mm NaCl, 50 mm EDTA, 0.01% thimerosal, and 10 mm Na2HPO4, pH 7.4). The primary antibody was diluted 1:250 in blocking buffer and incubated with the tissue for 4–7 d. The tissue was then washed twice per day for 2–3 d with washing buffer (2% Triton X-100, 1% BSA, 154 mm NaCl, 50 mm EDTA, 0.01% thimerosal, and 10 mm Na2HPO4, pH 7.4). It was then incubated with a 1:500 dilution of secondary antibody (lissamine rhodamine goat anti-rat; Jackson ImmunoResearch) for 2–3 d. The tissue was then washed twice with washing buffer for 1 d and four times with storage buffer (1% BSA, 154 mm NaCl, 50 mm EDTA, 0.01% thimerosal, and 10 mm Na2HPO4, pH 7.4) for 1 d.
For double labeling of physiologically identified B64 cells with ApVGLUT, neurons were identified based on morphology and electrophysiological characters and injected with carboxyfluorescein. Tissue was fixed and processed for immunocytochemistry as described above.
Western blot
Western blot was performed with equal amounts of protein from buccal, cerebral, pleural, pedal, and abdominal ganglia, and 50 μg of protein was loaded per lane. The concentration of protein was measured using a Bradford assay in loading buffer before phenol blue was applied.
Electrophysiology
Electrophysiological recordings from CNS preparations (including the cerebral and buccal ganglia) were performed as described previously (Jing and Weiss, 2005; Bai et al., 2013; Wu et al., 2014). Ganglia were desheathed, transferred to a recording chamber containing 1.5 ml of ASW, continuously perfused at 0.3 ml/min, and maintained at 14–17°C. To suppress polysynaptic pathways, a high divalent cation saline was used containing the following (in mm): 368 NaCl, 10 KCl, 13.8 CaCl2, 101 MgCl2, and 10 HEPES, pH 7.6. This high-divalent cation saline was used here because it did not alter the amplitudes of PSPs (Trudeau and Castellucci, 1992). It has lower divalent ionic concentration than high-divalent saline commonly used in other studies (Byrne et al., 1978). Drugs were dissolved in ASW immediately before each application. The ASW with the drug was perfused into the recording chamber, except for the glutamate puff, which was applied to the cell of interest with broken electrodes of 3–5 μm diameter through pressure ejection (Picospritzer II; General Valve). During all pharmacological experiments, we made sure that the membrane potential during the drug perfusion remained the same as the control by applying appropriate hyperpolarization or depolarization currents. The cell hyperpolarization/depolarization was performed using single electrode current-clamp technique and care was taken to correctly balance the electrode resistance.
Intracellular recordings were made using single-barrel electrodes (5–10MΩ) filled with either 2 m K-acetate and 30 mm KCl or 0.6 m K2SO4 and 60 mm KCl. Intracellular signals were acquired using an Axoclamp 2B or 900A amplifier (Molecular Devices), Neuroprobe amplifier Model 1600 (A-M Systems), or a Getting model 5A amplifier. A Grass model S88 stimulator was used for stimulation.
Data analysis
Electrophysiological recordings were digitized on-line with AxoScope (Molecular Devices) and plotted with CorelDraw (Corel). Bar graphs were plotted using SigmaPlot. Data are expressed as the mean ± SEM. Statistical tests included a Student's t test and a repeated-measures one-way ANOVA and were applied as appropriate using Prism software (GraphPad). Data that showed significant effects in ANOVA were further analyzed in individual comparisons with Bonferroni's correction. In all statistical tests, effects were considered statistically significant when p < 0.05.
Results
Identification of Aplysia vesicular glutamate transporter by RDA
In this study, we sought to extend the utility of the RDA method to identify a protein in glutamatergic neurons in the feeding circuit. To accomplish this, we used the putative glutamatergic motoneuron B38 (Fox and Lloyd, 1999) as a tester and B1/B2 as a driver (Fig. 1). The conventional neurotransmitter of B1 is presently unknown, whereas B2 is known to be cholinergic (Lloyd et al., 1985). Our goal was to clone the RNAs that may be specifically expressed in B38.
The first round of subtraction between B38 and B1/B2 allowed abundant RNAs present in B38 to be apparent as prominent difference bands, i.e., between 0.5 and 0.75 kb (Fig. 1). Subcloning the products of the first subtraction did not yield useful colonies that contained unique products (as determined by differential screening; perhaps due to the smear of products contained in all the lanes). To reduce the number of products and enhance difference bands we performed a second round of subtraction by repeating step 3 (Fig. 1), i.e., the driver cDNAs were digested with DpnII and ligated with the driver cDNA and then PCR amplified using biotinylated primers and hybridized with products from the first subtraction. Subcloning the products from this second subtraction produced colonies that contained unique products (as determined by differential screening). Several difference clones obtained from B38 were sequenced to reveal open reading frames that code for proteins; one of them is described in detail in this report.
We also performed similar experiments with the interneuron B64, a putative glutamatergic cell. For this RDA we only performed one round of subtraction and did not have to perform a second round of subtraction, as we did for B38. Importantly, one difference clone obtained from B64 with RDA matched one of the clones obtained from B38. Its sequence has been deposited into the NCBI database (GenBank accession number: KR697562).
To identify the protein present in both B64 and B38, we performed a Blast search (Table 1). We found that it has high homology to known vesicular glutamate transporters. Therefore we named it Aplysia vesicular glutamate transporter or ApVGLUT.
Table 1.
VGLUTs | Sequence similarities | Full names | GenBank ID |
---|---|---|---|
LsVGLUT-622 | 87.5% | VGLUT, Lymnaea stagnalis | BAG83236.1 |
AvVGLUT-609 | 82.8% | VGLUT, Ambigolimax valentianus | BAG41985.1 |
CgVGLUT2.1-618 | 67.8% | VGLUT2.1, Crassostrea gigas | EKC24439.1 |
MmVGLUT2-582 | 64.8% | VGLUT2, Mus musculus | NP_543129.3 |
ClfSCF17m6-583 | 64.5% | SCF17m6(VGLUT2), Canis lupus familiaris | EDM07210.1 |
BtVGLUT2-582 | 64.2% | VGLUT2, Bos Taurus | NP_001096580.1 |
HsVGLUT2-582 | 64.2% | VGLUT2, Homo sapiens | NP_065079.1 |
HsVGLUT3i1-589 | 63.9% | VGLUT3 isoform 1, H. sapiens | NP_647480.1 |
DrVGLUT3-590 | 63.5% | VGLUT3, Danio rerio | ACG50690.1 |
MmVGLUT3-601 | 63.3% | VGLUT3, M. musculus | NP_892004.1 |
DrVGLUT2.2-587 | 62.4% | VGLUT2.2, D. rerio | NP_001009982.1 |
DrVGLUT2.1-584 | 61.1% | VGLUT2.1, D. rerio | BAD67437.1 |
MmVGLUT1-560 | 60.5% | VGLUT1, M. musculus | NP_892038.2 |
HsVGLUT1-560 | 60.5% | VGLUT1, H. sapiens | NP_064705.1 |
DrVGLUT1-582 | 59.6% | VGLUT1, D. rerio | NP_001092225.1 |
HsVGLUT3i2-539 | 56.8% | VGLUT3 isoform 2, H. sapiens | NP_001138760.1 |
CeEAT4i1-576 | 55.7% | Protein EAT-4 isoform a, Caenorhabditis elegans | CAA80150.1 |
CeEAT4i2-555 | 54.6% | Protein EAT-4 isoform b, C. elegans | CCW46023.1 |
DmVGLUT-632 | 52.8% | VGLUT, Drosophila melanogaster | AAF51256.2 |
Bioinformatics of ApVGLUT
We performed a bioinformatics analysis to determine the relationship between ApVGLUT and other proteins. First, we compared ApVGLUT to an Aplysia glutamate transporter described in a previous study, ApGT1 (Levenson et al., 2000; Collado et al., 2007). Because these authors did not deposit their sequence into the NCBI database, we copied it from their paper and found an identical sequence predicted by the Aplysia Genome Project (http://www.broadinstitute.org/science/projects/mammals-models/vertebrates-invertebrates/aplysia/aplysia-genome-sequencing-project). The sequence from the Aplysia Genome Project was named Aplysia californica excitatory amino acid transporter 2 like (accession number: XP_005103093). This protein belongs to a separate class of glutamate transporters that are localized to the cell membrane. It has little homology to ApVGLUT and, thus, is not directly related to it.
In addition to the sequence for the cell membrane transporter, the Aplysia Genome Project predicts six vesicular glutamate transporter sequences (accession number: XP_005108654.1, XP_005108649.1, XP_005105900.1, XP_005104627.1, XP_005095393.1, and XP_005090726.1). Based on sequence alignment (BioEdit software; http://www.mbio.ncsu.edu/BioEdit/bioedit.html), our sequence is most similar to the third sequence (vesicular glutamate transporter-3 like, 128 aa; identity with our sequence: 20.5%). If we remove the nonoverlapping sequence from ApVGLUT, the identity became 97.7%, raising the possibility that the third sequence is a fragment of ApVGLUT. Importantly, most of these sequences are short (<391 aa). The only exception is the first sequence, which is 505 aa. Complete vesicular glutamate transporters are usually larger than 560 aa. Thus, the six predicted sequences are likely to be incomplete, precluding a more meaningful comparison with ApVGLUT (611 aa).
Finally, we used “tblastn” to search a transcriptome database (http://www.aplysiagenetools.org/) of various Aplysia tissues (including the CNS). This database is yet to be deposited in the NCBI database. We found four identical sequences (e.g., c127598_g2_i1, 584 aa) that have an identity score of 95% with our sequence. The only difference between ApVGLUT and the four sequences is that the latter are missing two stretches of amino acids (271–284 and 393–404). Interestingly, we did not find any other sequences that were as long as ours (i.e., >500 aa). Nevertheless, the search verifies the presence of our sequence in the Aplysia transcriptome.
Second, we sought to determine how similar ApVGLUT is to proteins in other species. To identify proteins for comparison we performed a Blast search, which yielded 100 related sequences. All 100 sequences were labeled as vesicular glutamate transporters with a majority of them being “Predicted.” The large number of sequences made it difficult to perform a meaningful comparison with ApVGLUT. We therefore sought to compile a more manageable list (Table 1), first by excluding the Predicted sequences that appeared to be solely derived from genome projects and are by and large unconfirmed. This left nine sequences: Lymnaea (LsVGLUT-622), Greenhouse slug (AvVGLUT-609), Oyster (CgVGLUT2.1-618), Rat (RnSCF17m6-588 and RnVGLUT2-582), Mouse (MmVGLUT2-582), Cattle (BtVGLUT2-582), Dog (ClfSCF17m6-583), and Human (HsVGLUT2-582). We decided to keep one rodent species (i.e., MmVGLUT2-582) and excluded both RnSCF17m6-588 and RnVGLUT2-582.
Mammalian VGLUTs are the best studied, and have been shown to be of three major types, i.e., VGLUT1, VGLUT2, VGLUT3, which may differ in terms of their distribution and function (El Mestikawy et al., 2011; Omote and Moriyama, 2013). We therefore wanted to compare ApVGLUT to all three mammalian VGLUTs. Our Blast search only returned VGLUT2s. We therefore added VGLUT1s and VGLUT3s from several mammalian species (HsVGLUT1-560, MmVGLUT1-560, HsVGLUT3i1-589, HsVGLUT3i2-539, and MmVGLUT3-601). A further goal of this work was to determine how VGLUTs might evolve (cf. Moroz et al., 2006; Sossin and Abrams, 2009; Hatakeyama et al., 2010; Lin et al., 2010). Consequently, we added sequences from several model systems along the evolutionary tree: C. elegans (CeEAT4i1-576 and CeEAT4i2-555), Drosophila (DmVGLUT-632), zebrafish (DrVGLUT1-582, DrVGLUT2.1-584, DrVGLUT2.2-587, and DrVGLUT3-590; Higashijima et al., 2004; Obholzer et al., 2008). This resulted in a total of 19 sequences in our list.
We used BioEdit software (http://www.mbio.ncsu.edu/BioEdit/bioedit.html) with a BLOSUM62 matrix algorithm to analyze the similarities between ApVGLUT and the 19 sequences. Table 1 shows the results and indicates that ApVGLUT is most similar to Lymnaea VGLUT with a similarity score of 87.5%. The second and third sequences in the list were also obtained from molluscs. Following the three molluscan sequences are VGLUT2s from mammals, including Bos taurus (cattle), Canis (dog), humans, rat, and mice. Thus, these data suggest that, outside of molluscs, ApVGLUT is most similar to mammalian VGLUTs, particularly VGLUT2s.
To examine the possible transmembrane domain structure of ApVGLUT, we generated a hydrophobicity plot (Fig. 2A) with the BioEdit software. This plot is typical of vesicular transporter proteins with multiple transmembrane domains. It suggested that ApVGLUT may have eight transmembrane domains, i.e., there are eight regions with a hydrophobicity that is >1.6. It also indicated that the N and C terminus of the molecule are likely to be cytoplasmic. We also used TMHMM software (http://www.cbs.dtu.dk/services/TMHMM/) to predict helical transmembrane regions (Table 2). This analysis suggested that there might be 10 helical transmembrane regions in ApVGLUT. Similar results were obtained with two other software packages (TMPred1 and WHAT), which predicted 9–10 helical transmembrane regions.
Table 2.
Sequence | 1–88 | 89–111 | 112–146 | 147–169 | 170–175 | 176–195 | 196–236 |
Region | i1 | M1 | o1 | M2 | i2 | M3 | o2 |
Sequence | 237–259 | 260–265 | 266–285 | 286–370 | 371–393 | 394–405 | 406–425 |
Region | M4 | i3 | M5 | o3 | M6 | i4 | M7 |
Sequence | 426–428 | 429–451 | 452–463 | 464–486 | 487–500 | 501–523 | 524–611 |
Region | o4 | M8 | i5 | M9 | o5 | M10 | i6 |
I, inside region; M, membrane helix; o,outside region.
Sequence alignment between ApVGLUT and other mammalian VGLUTs showed that most similarities were observed in the middle of the protein. Proteins differed significantly at the two ends (1–81 and 540–611 aa; Fig. 2B). This suggests that transmembrane regions are more conserved with large variability present at N and C termini. For comparison, we generated hydrophobicity plots for mice VGLUT1–3 and Drosophila and C. elegans VGLUTs, and overlaid the ApVGLUT hydrophobicity plot with them (Fig. 2B,C). This comparison showed that the hydrophobicity plot of ApVGLUT is largely similar to those of mice VGLUT1–3 and Drosophila and C. elegans VGLUTs, suggesting that the basic structure (e.g., transmembrane domains of ApVGLUT) is similar to other VGLUTs, although there appears to be more differences between ApVGLUT and Drosophila and C. elegans VGLUTs than between ApVGLUT and mice VGLUTs.
With the 19 sequences and ApVGLUT, we used MEGA software (https://mega.co.nz/) to generate a phylogenetic tree (Fig. 3). As expected this analysis indicated that ApVGLUT is closest to the Lymnaea VGLUT. It further suggested that ApVGLUT is more similar to mammalian VGLUTs than to Drosophila or C. elegans VGLUTs.
ApVGLUT transports glutamate
The structural similarity between ApVGLUT and other vesicular glutamate transporters suggests that ApVGLUT is indeed a glutamate transporter. To verify this, we expressed ApVGLUT in COS7 cell lines and examined the cells' uptake of radioactively labeled glutamate following digitonin permeabilization of the plasma membrane (Hayashi et al., 2001).
We verified successful expression of ApVGLUT mRNA in COS7 cells using RT-PCR (Fig. 4A) and immunocytochemistry (Fig. 4B). To make antibodies more specific, we selected fragments from the N-terminal and C-terminal portions of ApVGLUT (regions that showed the most variability in our sequence comparisons). We bacterially expressed the two fragments, N termini (75 aa) and C termini (88 aa; with 6Histag in BL21 cells), and then used the purified products as antigens to immunize rats to produce two antibodies (N termini, iNT, and C termini, iCT).
The immunostaining in COS7 cells (Fig. 4B2) was cytoplasmic and had a punctate appearance, suggesting that it was localized to intracellular organelles that take up glutamate. This is consistent with an earlier study (Hayashi et al., 2001), which reported punctate staining when mammalian VGLUT2 was expressed in COS7 cells and was presumably localized to endosomes.
Glutamate uptake in COS7 cells transfected with ApVGLUT was significantly higher than glutamate transport in cells that had been transfected with the vector alone (n = 5; Fig. 4C). ATP is required to maintain the proton gradient that enables uptake of glutamate into vesicles (Roseth et al., 1995; Bellocchio et al., 2000; Hayashi et al., 2001). Consistent with this, omitting ATP reduced glutamate retention by COS7 cells transfected with ApVGLUT (n = 5). In addition, we disrupted the proton gradient pharmacologically with a proton ionophore, FCCP (40 μm, n = 4), and with bafilomycin A1 (a specific inhibitor of vacuolar proton ATPase; Hayashi et al., 2001; 1 μm, n = 3). These treatments reduced glutamate retention. Evans blue is an effective inhibitor of mammalian VGLUT (Roseth et al., 1995; Bellocchio et al., 2000) and at 5 μm reduced glutamate uptake in COS7 cells transfected with ApVGLUT (n = 3). Finally, 1 mm nonradioactive glutamate competitively reduced uptake of radioactive glutamate (n = 6), whereas 1 mm l-aspartate (n = 4) and 1 mm d-aspartate (n = 3) had no effect. These results indicate that ApVGLUT is in fact a proton gradient-dependent glutamate transporter.
ApVGLUT expression in Aplysia CNS and B64 interneurons
To determine the distribution of ApVGLUT in the Aplysia CNS, we first performed ISH experiments with a digoxigenin-labeled antisense-RNA probe. ISH staining showed that the ApVGLUT message was expressed in the cell bodies of neurons in buccal and cerebral ganglia (Fig. 5). Somata of identified glutamatergic neurons in the rostral buccal ganglion (i.e., the motor neuron B38 and a sensory neuron B21; Fig. 5, arrows) were labeled.
In other experiments, we mapped the distribution of ApVGLUT in the buccal and cerebral ganglia using the two antibodies we had generated (Fig. 6). Immunostaining patterns with the two antibodies were similar. We also stained pleural-pedal ganglia and the abdominal ganglion. In general, ApVGLUT immunoreactivity is observed in all ganglia and is most intense in the neuropil. The staining pattern in the somata of the buccal and cerebral ganglia was similar to the staining pattern observed with ISH (Fig. 5) suggesting that our antibodies are specific. For example, the cell body of B38 was immunopositive. Previously, although the axons of B38 were stained with an antibody against glutamate, its cell body was not stained (Fox and Lloyd, 1999). Thus, our data obtained using RDA, ISH, and immunohistochemistry all complement previous work, reinforcing the idea that B38 is glutamatergic. Further, our antibodies against ApVGLUT offer a better way to identify novel glutamatergic neurons because cell bodies are labeled.
Using the same antibody (iCT), we performed Western blot (Fig. 7) with intact ganglia, and found that the buccal, cerebral, and pleural-pedal ganglia had various levels of ApVGLUT, while the abdominal ganglion had the least.
Because ApVGLUT was found through RDA with B64, we performed double-labeling experiments to determine whether B64 is ApVGLUT positive. We physiologically identified B64 and injected it with carboxyfluorescein, and then performed in situ hybridization and immunohistochemistry staining with two ApVGLUT antibodies. Indeed, B64 was double labeled, indicating that B64 contains ApVGLUT mRNA (Fig. 8A) and is ApVGLUT immunoreactive (Fig. 8B,C).
Pharmacological profiles of B64 synaptic connections are consistent with their glutamatergic nature
The data described above show that ApVGLUT derived through RDA performed on B38 and B64 is likely to be a vesicular glutamate transporter (i.e., it does indeed transport glutamate). ApVGLUT is present in the CNS, in the interneuron B64. This suggests that B64 is glutamatergic. To seek further evidence we performed pharmacological experiments, during which high-divalent saline was used to suppress polysynaptic influences.
B64 is a feeding central pattern-generating (CPG) interneuron (Hurwitz and Susswein, 1996; Jing et al., 2003; Wu et al., 2007) that is active during the retraction phase of feeding motor programs. It is important for the initiation of retraction, and plays a critical role in phase switching from protraction to retraction by making inhibitory connections to protraction neurons (e.g., B61/62), and excitatory connections to neurons active during retraction (e.g., B3). To determine whether exogenous glutamate mimics the effects of B64 activity, we applied puffs of glutamate to both B3 and B61/62. As expected, glutamate induced a depolarizing response in B3 and a hyperpolarizing response in B61/62 (Fig. 9A; n = 3). In an attempt to occlude effects of transmitter released by B64, we perfused preparations with 1 and 10 mm glutamate. Glutamate at 10 mm occluded both EPSPs in B3 (34.9% of the control, F(3,6) = 8.53; p < 0.05) and IPSPs in B61/62 (35.6% of the control, F(3,6) = 12.54; p < 0.01) elicited by B64 (Fig. 9C; n = 3). Notably, although the unitary PSPs from B64 to its postsynaptic followers were generally too small to be discernible, we did observe that the monosynaptic IPSPs from B64 to B61/62 followed presynaptic spikes one for one (Fig. 9B). The data suggested that B64-elicited synaptic responses are at least partially fast PSPs.
EPSPs at glutamatergic synapses in mammals are sensitive to CNQX (Honoré et al., 1988; Davies and Collingridge, 1990). CNQX is also an effective glutamatergic antagonist in Aplysia (Trudeau and Castellucci, 1993; Sasaki et al., 2007), Lymnaea (Brierley et al., 1997), and Tritonia (Megalou et al., 2009). We found that CNQX reduced B64-induced EPSPs in B3 to 35.5% of control values (Fig. 10A; F(2,4) = 20.91; p < 0.01; n = 3). CNQX had no effect on B64-induced IPSPs in B61/62 (F(2,4) = 3.61; p > 0.05; n = 3). Note that the incomplete occlusion and incomplete block by the relatively high concentration of the above pharmacological reagents were likely due to incomplete penetration of reagents to synaptic sites in the neuropil, which is deep in the ganglia.
Quisqualic acid (QA) activates a glutamate-mediated K-current in Aplysia (Katz and Levitan, 1993). IPSPs can result from the induction of K-currents. We determined the reversal potential of B64-elicited IPSPs in contralateral B61/62 and found that it was −92.75 ± 1.79 mV (n = 4). We might have overestimated the reversal potential because the synaptic contact between B64 and B61/62 might be distant from the soma. Regardless, the reversal potential is closer to K equilibrium potential rather than to Cl equilibrium potential, because previous work (Brown et al., 1970) indicated that in Aplysia neurons the equilibrium potential of K is approximately −80 mV, whereas that of Cl is approximately −57 mV. This is consistent with the idea that K-current mediates IPSPs in B61/62. We then sought to determine whether bath application of 10−5 m QA could occlude B64-induced IPSPs in B61/62. Our data indicate that this was the case (Fig. 10B; F(2,6) = 106.3; p < 0.0001; n = 4). Nonetheless, it has been previously shown that glutamatergic IPSPs in invertebrate CNS may be related to activation of chloride channels (Cleland, 1996), which can be blocked by picrotoxin. We therefore tested the effects of 10−4 m picrotoxin on the IPSPs from B64 to B61/62 (data not shown) and found that it had no significant effect on the amplitude of the compound IPSPs (Control: −3.64 ± 0.65 mV; picrotoxin: −3.38 ± 0.64 mV; Wash: −3.29 ± 0.62 mV; F(2,6) = 2.92; p > 0.05; n = 4), thus further supporting the idea that the IPSPs from B64 to B61/62 are mediated by K.
These data provide pharmacological evidence that supports the identification of B64 as a glutamatergic neuron that uses glutamate to exert both excitatory and inhibitory actions in the Aplysia feeding circuit.
Discussion
ApVGLUT and other vesicular glutamate transporters: evolutionary implications
One major goal of this study was to determine whether our RDA approach, initially used to identify abundantly expressed neuropeptides, can also be used to identify larger proteins that may be expressed in limited amounts. We show that RDA can in fact be effective for this purpose. Importantly, we verified the expression and function of an Aplysia VGLUT using a variety of approaches, including in situ hybridization, immunocytochemistry, and cell biological and pharmacological techniques.
Taking advantage of the considerable sequence information available for VGLUTs, we used bioinformatics to determine how ApVGLUT relates to other proteins. Not surprisingly, ApVGLUT is most closely related to VGLUTs from three other molluscs, e.g., Lymnaea (Hatakeyama et al., 2010). Intriguingly, both our sequence comparison (Table 1) and phylogenetic analysis (Fig. 3) showed that outside of molluscs, ApVGLUT is more closely related to mammalian VGLUTs than to homologous proteins in two other invertebrates, C. elegans and Drosophila. A similar result has been obtained in other studies that have compared Aplysia proteins (Moroz et al., 2006) or miRNA (Rajasethupathy et al., 2009) to C. elegans and Drosophila molecules (see also Hatakeyama et al., 2010). Such findings provide additional impetus for continued studies of the Aplysia model system.
VGLUTs in mammals (and zebrafish) have been divided into three major types, i.e., VGLUT1, VGLUT2, and VGLUT3. Although the biochemical properties of the three mammalian isoforms are similar, they do differ in their distributions within the CNS (El Mestikawy et al., 2011; Omote and Moriyama, 2013). There is one major outstanding question: Do invertebrates (including Aplysia) have more than one type of VGLUT? Curiously, existing data in C. elegans (Lee et al., 1999; Chalasani et al., 2007; Serrano-Saiz et al., 2013) and Drosophila (Daniels et al., 2004) indicate that there is only one VGLUT. Intriguingly, lamprey, a primitive vertebrate, appears to have only one VGLUT as well (Villar-Cerviño et al., 2010). Thus, apparently, before zebrafish (Higashijima et al., 2004; Obholzer et al., 2008) there is only one confirmed VGLUT in each species. In contrast, it has been suggested that oysters (Crassostrea gigas) have three VGLUTs (Zhang et al., 2012); however, whether these proteins are actually expressed and function to transport glutamate has not been established. In Aplysia and Lymnaea, one VGLUT has been characterized, but genomic data in Aplysia suggest that there may be an additional VGLUT. Additionally, previous work in Aplysia (Dale and Kandel, 1993) indicates that sensory neurons in the pleural ganglion appear to be glutamatergic (but see Trudeau and Castellucci, 1993). Interestingly, we found that these neurons were not stained by our ApVGLUT antibody (Fig. 6). This raises the possibility that additional VGLUTs may exist in Aplysia. Thus, in future studies, it will be of interest to determine whether there is more than one type of VGLUT in invertebrates in general and in Aplysia in particular.
In previous studies conducted on Drosophila and C. elegans, expression of VGLUT genes has been manipulated to demonstrate that glutamatergic synaptic transmission is altered (Lee et al., 1999; Daniels et al., 2004, 2006). This suggests that invertebrate VGLUTs transport glutamate. To the best of our knowledge, however, the present study is the first to use cell biological techniques to directly demonstrate that this is the case. Specifically, we showed that ApVGLUT expressed in COS7 cells transports glutamate, but not aspartate. Moreover, the transport by ApVGLUT is similar to those by mammalian VGLUTs (Roseth et al., 1995; Bellocchio et al., 2000; Hayashi et al., 2001; Omote and Moriyama, 2013), because it is also dependent on ATP and a proton gradient and has a similar pharmacological profile.
Glutamatergic actions in Aplysia feeding circuit
In this study, we generated ApVGLUT antibodies, which present a novel reliable way to identify glutamatergic neurons in neural circuits of Aplysia. There is considerable interest in these neurons since glutamate is the primary excitatory neurotransmitter in the mammalian CNS (Jahr and Lester, 1992). In Aplysia, neurons are re-identifiable, which makes them particularly well suited for circuitry studies. Previous experiments have demonstrated that sensory neurons in the gill-withdrawal reflex circuit are glutamatergic (Dale and Kandel, 1993), and in the feeding circuit, some sensory neurons, like B21 (Klein et al., 2000), and motoneurons, like B38 (Fox and Lloyd, 1999), appear to be glutamatergic. Despite this progress, glutamatergic neurons have been difficult to identify in general because significant levels of glutamate may be present in neurons that do not release glutamate. Consequently, it had been hypothesized that glutamate might be the neurotransmitter for some feeding CPG neurons, e.g., B64, but this had not been directly confirmed.
The Aplysia feeding circuit generates a rhythmic pattern of repetitive protraction–retraction sequences (Cropper et al., 2004; Jing, 2009; Jing et al., 2009), with protraction initiated first followed by retraction. Previous work has shown that many critical neurons that play important roles in the generation of protraction are cholinergic. These neurons include command-like neurons, cerebral-buccal interneuron-2 (CBI-2) and -11 (CBI-11), buccal interneurons B50, and CPG interneurons, B63 and B34 (Dembrow et al., 2003, 2004; Hurwitz et al., 2003; Wu et al., 2014). Our recent work suggests that CBI-10, another command-like neuron, is also cholinergic (S.-A. Chen, T.-T. Chen, K. Yu, D.-D. Liu, F.S. Vilim, E.C. Cropper, K.R. Weiss, J. Jing, unpublished observations). Because a feeding cycle is initiated when protraction begins, these data indicate that cholinergic actions are critical for the initiation of feeding behavior. Notably, consistent with a role in initiating activity, cholinergic transmission between these protraction neurons and follower cells is primarily excitatory.
In contrast, before the present study, it was unclear what transmitter plays a major role in the generation of retraction. Our present study indicates that B64, which is critical for the generation of retraction (Hurwitz and Susswein, 1996; Jing et al., 2003; Wu et al., 2007), is glutamatergic. This is supported by a number of findings. Namely, we characterized ApVGLUT using RDA with B64. B64 is ApVGLUT immunoreactive, and pharmacological agents that impact glutamatergic transmission at other synapses affect synaptic transmission between B64 and follower neurons. Importantly, B64 serves a dual role in retraction as it suppresses the activity of protraction neurons (e.g., B61/62) to help terminate protraction and excites retraction neurons (e.g., B3) to sustain retraction. Thus, B64 elicits both excitatory and inhibitory PSPs on target neurons, i.e., EPSPs in B3 and IPSPs in B61/62 (Hurwitz and Susswein, 1996). Our pharmacological evidence indicates that both the excitatory and inhibitory contacts made by B64 are glutamatergic. Notably, although previous work indicated that glutamatergic IPSPs in invertebrate CNS (Cleland, 1996) may be related to activation of a Cl ion channel, our data suggest that B64 to B61/62 IPSPs are likely mediated by K rather than Cl. This is suggested by their reversal potential, their sensitivity to QA, and their insensitivity to picrotoxin. Regardless, the present findings have two major implications. First, our study supports the idea that glutamate may be an important transmitter in the generation of retraction (Sasaki et al., 2007) by implementing the dual role of B64 in the feeding circuit. Second, and more generally, these data suggest that the Aplysia feeding circuit may be different from neural circuits in the mammalian CNS, in that in mammalian circuits glutamate may be the primary excitatory transmitter, whereas in Aplysia, glutamate may play a secondary role as it acts both as an excitatory and inhibitory transmitter. This may also be true in other molluscs, e.g., Lymnaea (Benjamin, 2012). As more neural circuits in molluscs are elucidated, it would be of interest to determine what kinds of roles ACh and glutamate may play in neural circuits other than the feeding circuit.
In summary, we used a multidisciplinary approach to identify and characterize the vesicular glutamate transporter in Aplysia. We have successfully shown that B64, a critical interneuron in the Aplysia feeding circuit, is ApVGLUT positive and uses glutamate to mediate both excitatory and inhibitory synaptic transmission. Thus, our studies might be expected to facilitate the study of glutamatergic neurons in neural circuits of Aplysia. More generally, our RDA-based approach should also be readily adaptable to other model systems with identifiable neurons.
Footnotes
This work was supported by the National Institutes of Health (NS066587, NS070583, and MH051393), the National Natural Science Foundation of China (31371104), and the National Undergraduate Innovation Program and National Natural Science Foundation of China grants (J1103512 and J1210026). We thank Drs. J.-J. Wang, J.-N. Zhu, and Q.-X. Zhuang for providing picrotoxin.
The authors declare no competing financial interests.
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