Mol Biol Evol. 31(12):3240–3249, 2014. doi:10.1093/molbev/msu257
In the original version of table 1, the locus H19 (chr7:142575532–142578146) imprinting status was accidentally listed in the hypothalamus (HYP) column, but should be in the vomeronasal organ (VNO) column. The conclusions and the original data, deposited at ArrayExpress (www.ebi.ac.uk/arrayexpress), accession number E-MTAB-3288, are not affected.
Table 1.
List of Imprinted Transcripts Identified in This Study.
| Region in mm10 | Gene Name | Liver | HYP | VNO | Status | SNPs Fst > 0.8 |
|---|---|---|---|---|---|---|
| chr1:63273269–63314575 | Zdbf2 | − | pat > 0.95 | − | Known | — |
| chr1:63445904–63596515 | Adam23 | + | pat > 0.55 | + | Knowna,b | — |
| chr2:152669461–152708668 | H13 (short) | − | pat > 0.8 | pat > 0.95 | Known | — |
| chr2:152669461–152708668 | H13 (long) | mat > 0.7 | mat > 0.8 | mat > 0.6 | Known | — |
| chr2:152780668–152831682 | Bcl2l1 | + | pat > 0.55 | + | Knowna | — |
| chr2:157556362–157566361 | Blcap | + | mat > 0.62 | + | Known | — |
| chr2:157560110–157562519 | Nnat | − | pat > 0.99 | pat > 0.75 | Known | — |
| chr6:4674350–4747204 | Sgce | − | pat > 0.95 | pat > 0.95 | Known | — |
| chr6:4747306–4760516 | Peg10 | − | pat > 0.95 | − | Known | — |
| chr6:4903320–5165661 | Ppp1r9a | − | mat > 0.55 | + | Known | — |
| chr6:5383386–5433021 | Asb4 | − | mat > 0.8 | − | Known | — |
| chr6:30401909–30455174 | Klhdc10 | + | mat > 0.55 | + | Knowna | — |
| chr6:30738050–30748466 | Mest | − | pat > 0.95 | pat > 0.95 | Known | — |
| chr6:30804784–30807552 | Copg2os2 | − | pat > 0.95 | − | Known | — |
| chr6:30809559–30896760 | Copg2 | + | mat > 0.7 | + | Known | — |
| chr6:58833700–58920396 | Herc3 | − | mat > 0.65 | + | Known | — |
| chr6:58905233–58907126 | Nap1l5 | − | pat > 0.99 | pat > 0.95 | Known | — |
| chr7:6671269–6672888 | AK003710 | − | mat > 0.9 | − | New | — |
| chr7:6675443–6696432 | Zim1 | − | mat > 0.9 | − | Known | — |
| chr7:6703901–6730554 | Peg3 | pat > 0.95 | pat > 0.99 | pat > 0.99 | Known | — |
| chr7:6730741–6967220 | Usp29 | − | pat > 0.99 | − | Known | — |
| chr7:59228750–59306727 | Ube3a | + | mat > 0.8 | + | Known | — |
| chr7:59262923–59263934 | AK038761 | − | pat > 0.99 | − | Newc | — |
| chr7:59281852–59290247 | A230073K19Rik | − | pat > 0.99 | − | Newc | 1 |
| chr7:59307924–59324149 | C230091D08Rik | + | mat > 0.8 | + | Knowna | — |
| chr7:59327318-59328016 | AK020709 | − | pat > 0.95 | − | New | — |
| chr7:59937467–59975759 | D7Ertd715e | − | pat > 0.99 | − | Newc | 4 |
| chr7:59976740–59980676 | AK139082 | − | pat > 0.99 | − | Newc | 1 |
| chr7:59982501–60140219 | Snrpn/Snurf | pat > 0.99 | pat > 0.99 | pat > 0.99 | Known | 1 |
| chr7:61010256–61012230 | AK046019 | − | pat > 0.99 | − | Known | — |
| chr7:61072752–61089737 | AK038418 | − | pat > 0.95 | − | New | — |
| chr7:61089568–61221965 | DOKist4 | − | pat > 0.99 | − | Knowna | — |
| chr7:61529410–61615327 | B230209E15Rik | − | pat > 0.95 | − | New | — |
| chr7:61705850–61927574 | A230057D06Rik | − | pat > 0.95 | − | New | — |
| chr7:61751446–61753692 | AK031915/AK046509 | − | pat > 0.99 | + | New | — |
| chr7:61930789–61982715 | ENSMUST00000181804 | − | pat > 0.99 | − | New | — |
| chr7:61930944–61934821 | AK048029 | − | pat > 0.99 | − | New | — |
| chr7:62348277–62349927 | Ndn | − | pat > 0.99 | pat > 0.95 | Known | — |
| chr7:62376979–62381640 | Magel2 | − | pat > 0.99 | − | Known | — |
| chr7:128439777–128461513 | Tial1 | + | mat > 0.65 | + | New | — |
| chr7:128611365–128696436 | Inpp5f | + | pat > 0.8 | + | Known | — |
| chr7:142575532–142578146 | H19 | − | − | mat > 0.99 | Known | — |
| chr7:142650768–142658804 | Igf2 | − | mat > 0.55 | pat > 0.8 | Known | — |
| chr7:143107254–143427042 | Kcnq1 | − | − | pat > 0.99 | Known | — |
| chr7:143458339–143461050 | Cdkn1c | − | − | mat > 0.95 | Known | — |
| chr9:89909775–90026979 | Rasgrf1 | − | pat > 0.95 | − | Known | — |
| chr10:13090788–13131695 | Plagl1 | − | pat > 0.99 | pat > 0.99 | Known | — |
| chr11:11814101–11890408 | Ddc | + | mat > 0.55 | − | Known | — |
| chr11:11930499–12037420 | Grb10 | − | pat > 0.95 | mat > 0.95 | Known | — |
| chr11:22972005–22976496 | Zrsr1 | pat > 0.95 | pat > 0.95 | pat > 0.95 | Known | — |
| chr11:22899728–22982284 | Commd1/Murr | + | mat > 0.85 | + | Known | — |
| chr12:108860030–108893211 | Wars | + | pat > 0.55 | + | Knowna,b | — |
| chr12:109032182–109068217 | Begain | − | pat > 0.75 | − | Known | — |
| chr12:109453455–109463336 | Dlk1 | − | pat > 0.95 | − | Known | — |
| chr12:109542023–109568594 | Meg3 | − | mat > 0.95 | mat > 0.95 | Known | — |
| chr12:109589193–109600330 | Rtl1 | − | mat > 0.8 | − | Known | — |
| chr12:109603945–109661711 | Rian | − | mat > 0.99 | mat > 0.99 | Known | — |
| chr12:109734825–109749457 | Mirg | − | mat > 0.99 | − | Known | — |
| chr13:107413865–107414767 | ENSMUST00000061241 | mat > 0.65 | mat > 0.65 | + | New | |
| chr15:72506991–72508007 | AK039650 | − | mat > 0.95 | − | Knowna | — |
| chr15:72589620–73061204 | Trappc9 | + | mat > 0.7 | + | Known | — |
| chr15:72805600–72810324 | Peg13 | pat > 0.99 | pat > 0.99 | pat > 0.99 | Known | 5 |
| chr15:73098490–73099318 | DQ715667 | − | mat > 0.7 | + | Knowna | — |
| chr15:73101625–73184947 | Eif2c2 | + | mat > 0.7 | + | Knowna | — |
| chr17:77674376–77674702 | ENSMUST00000168236 | mat > 0.55 | mat > 0.55 | mat > 0.6 | New | — |
| chr18:12972252–12992948 | Impact | pat > 0.8 | pat > 0.95 | pat > 0.75 | Known | — |
Note.—Expression status is designed as “+” when expressed but not imprinted in a given tissue, as “−” when not expressed, and as the degree of maternal (mat) or paternal (pat) bias when imprinted. Chromosomal regions with clustered transcripts are separated by horizontal lines.
aFirst described by DeVeale et al. (2012).
bConfirmed by pyrosequencing in DeVeale et al. (2012).
cConfirmed by pyrosequencing in this study.