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. 2015 Jun 15;7(6):3076–3115. doi: 10.3390/v7062761

Figure 5.

Figure 5

Genome annotations of the type species of phylogenetically related families and genera. NCBI species RefSeqs were used for making annotations. Polero- and luteovirus annotations were corrected according to [239]. Panicovirus annotation was corrected according to [240]. All genome annotations are shown to scale for size comparisons. RdRp genes are shown in the upper frame (frame 0); middle frame represents +1 frame and lower frame represents +2 frame. Non-canonical AUG start codon is marked with asterisk (*). –1 ribosomal frameshifting is marked by long vertical dashed line. Read-through codon is shown by short vertical dashed line. Boxes with dashed borders: unique for the type species. Different protein functions are displayed with different colors and the homology is indicated by different tones. Color code: bright yellow—picornavirus-like RdRp; soft yellows and orange—flavivirus-like RdRp (three subgroups within Tombusviridae family are shown); red—serine protease; green—CP (CPs of Tombusviridae are presented in two different tones to distinguish CPs with protruding domains (shown in olive green) and without it (shown in dark green)); blue—movement protein (MP); lilac or purple—viral RNAi suppressor (VSR); brown—replication-associated protein (Rap); grey—no function found. VPg is depicted as a red dot at the 5′ end of the genomic RNA. Virus name abbreviations: MBV—Mushroom bacilliform virus (NC_001633); SBMV—Southern bean mosaic virus (NC_004060); PnLV—Poinsettia latent virus (NC_011543); PEMV-1—Pea enation mosaic virus-1 (NC_003629); PLRV—Potato leafroll virus (NC_001747); BYDV-PAV—Barley yellow dwarf virus-PAV (NC_004750); CMoV—Carrot mottle virus (NC_011515); CRSV—Carnation ringspot virus (NC_003530; NC_003531); OCSV—Oat chlorotic stunt virus (NC_003633); TBSV—Tomato bushy stunt virus (NC_001554); PoLV—Pothos latent virus (NC_000939); MNeSV—Maize necrotic streak virus (NC_007729); CarMV—Carnation mottle virus (NC_001265); FNSV—Furcraea necrotic streak virus (NC_020469); GaMV—Galinsoga mosaic virus (NC_001818); TNV-A—Tobacco necrosis virus-A (NC_001777); TNV-D—Tobacco necrosis virus-D (NC_003487); PMV—Panicum mosaic virus (NC_002598); MCMV—Maize chlorotic mottle virus (NC_003627).