Abstract
Synapses mediate information flow between neurons and undergo plastic changes in response to experience, which is critical for learning and memory. Conversely, synaptic defects impair information processing and underlie many brain pathologies. Rho-family GTPases control synaptogenesis by transducing signals from extracellular stimuli to the cytoskeleton and nucleus. The Rho-GTPases Rac1 and Cdc42 promote synapse development and the growth of axons and dendrites, while RhoA antagonizes these processes. Despite its significance, many aspects of Rho-GTPase signaling remain relatively unknown. Rho-GTPases are activated by guanine nucleotide exchange factors (GEFs) and inhibited by GTPase-activating proteins (GAPs). Though the number of both GEFs and GAPs greatly exceeds that of Rho-GTPases, loss of even a single GEF or GAP often has profound effects on cognition and behavior. Here, we explore how the actions of specific GEFs and GAPs give rise to the precise spatiotemporal activation patterns of Rho-GTPases in neurons. We consider the effects of coupling GEFs and GAPs targeting the same Rho-GTPase and the modular pathways that connect specific cellular stimuli with a given Rho-GTPase via different GEFs. We discuss how the creation of sharp borders between Rho-GTPase activation zones is achieved by pairing a GEF for one Rho-GTPase with a GAP for another and the extensive crosstalk between different Rho-GTPases. Given the importance of synapses for cognition and the fundamental roles that Rho-GTPases play in regulating them, a detailed understanding of Rho-GTPase signaling is essential to the progress of neuroscience.
Introduction
The human brain contains approximately 100 billion neurons that communicate via specialized sites of contact called synapses [1]. Most excitatory synapses in the brain are situated on dendritic spines, small actin-rich protrusions on dendrites [2]. Spines undergo rapid changes in shape and number in response to stimuli [3]. This remodeling is critical for synapse formation and refinement and for the synaptic plasticity that underlies learning and memory [4]. Abnormal spine morphogenesis results in impaired information processing and is linked to numerous neurodevelopmental, neuropsychiatric, and neurodegenerative disorders [5]. Thus, uncovering the mechanisms regulating the formation and plasticity of spines and synapses will provide critical insights into brain function and the treatment of brain disorders.
Rho-family GTPases direct the actin dynamics that drive the formation and remodeling of spines and synapses [6]. Typically, the Rho-GTPases Rac1 and Cdc42 promote the formation, growth, and maintenance of spines, whereas RhoA inhibits these processes [6]. Rho-GTPases cycle between an active GTP-bound state and an inactive GDP-bound state. When active, they interact with specific effectors and initiate signaling pathways that control cytoskeletal dynamics, membrane trafficking, and gene expression [7]. To coordinate these processes properly, Rho GTPases must be regulated with great spatiotemporal precision [8]. Two classes of proteins control the on/off cycling of Rho GTPases. Guanine nucleotide exchange factors (GEFs) activate Rho GTPases by catalyzing GDP/GTP exchange, whereas GTPase-activating proteins (GAPs) inhibit Rho GTPases by stimulating GTP hydrolysis [9]. Guanine dissociation inhibitors (GDIs) also negatively regulate Rho GTPases by sequestering inactive Rho GTPases in the cytosol [10].
Considerable evidence links aberrant Rho-GTPase signaling to brain disorders associated with spine and synapse defects [5]. For instance, mutations in genes encoding Rho-GTPase regulators and effectors cause intellectual disabilities in humans [11]. Furthermore, altered Rac1 signaling is implicated in the pathogenesis of Fragile X syndrome [12, 13], Rett syndrome [14], schizophrenia [15], and substance abuse [16]. Rac1 is also downregulated in patients with major depressive disorder and in mice subjected to chronic social defeat, resulting in depression-related behaviors and abnormal spine remodeling [17]. Dysregulated RhoA signaling is likewise implicated in neurodevelopmental disorders associated with autism [18, 19]. Although precise spatiotemporal regulation of Rho-GTPase signaling is necessary for formation and maintenance of functional synapses, little is known about how this is achieved. Multiple GEFs and GAPs exist for each Rho-GTPase [9], but it is unclear how these regulatory proteins sculpt Rho-GTPase activities in space and time, specify cellular responses, and regulate crosstalk between Rho-GTPase family members. Here, we will discuss recent data that are shedding new light on how Rho-GTPase signaling is precisely regulated in cells, with emphasis on pathways essential to the formation and plasticity of excitatory synapses.
Multidimensional regulation of single Rho GTPases
GEF/GAP complexes targeting single GTPases
Fluorescent probes that report Rho-GTPase activation in live cells have revealed that Rho-GTPase signaling dynamics occur on micrometer length and subminute time scales [8]. Moreover, experiments using constitutively-active and dominant-negative Rho-GTPase mutants indicate that on/off cycling is required for Rho-GTPase-driven processes like spine morphogenesis [20–22]. These observations imply that mechanisms must exist that precisely regulate Rho-GTPase signaling at synapses to control their development, plasticity and function. One mechanism that could provide tight spatiotemporal control is GEF/GAP complexes targeting a specific Rho-GTPase.
We recently reported the first functional characterization of a GEF/GAP complex targeting a single Rho-GTPase after identifying the Rac1-GAP Bcr (breakpoint cluster region) in a screen for proteins that interact with the Rac1-GEF Tiam1 (T-lymphocyte invasion and metastasis 1) (Fig. 1A) [23]. Both proteins had been implicated in excitatory synaptogenesis [24–27], but the tight association between the two in neurons was unexpected. Bcr function offsets Tiam1 function at synapses, as Bcr loss leads to increased Rac1 activation, spinogenesis, and synaptogenesis, and these defects are reversed by Tiam1 inhibition [23]. Moreover, disruption of the Tiam1/Bcr complex results in the same exuberant Rac1 activation and spine overgrowth phenotypes as either Bcr loss or competition with a GAP-dead Bcr mutant [23].
EphB receptor tyrosine kinases and their ephrin-B ligands utilize the Tiam1/Bcr complex to control synapse development [23]. EphBs promote spinogenesis in hippocampal pyramidal neurons via Tiam1-mediated Rac1 activation [26]. Following ephrin-B stimulation, neurons exhibit a transient increase in Tiam1’s Rac1-GEF activity coincident with a transient decrease in Bcr’s Rac1-GAP activity [23]. How this is achieved is unknown, though it could result from phosphorylation of Tiam1/Bcr and/or transient disruption of the Tiam1/Bcr complex [23]. In any case, loss of Bcr function converts the ephrin-B signal from spine-promoting to spine-eliminating due to a massive over-activation of Rac1 that triggersRac1-dependent endocytosis of EphB and AMPA receptors and leads to spine loss [23]. These data reflect the necessity of precise Rac1 regulation for neuronal development and reveal that tight coupling between Rac1 activation and inhibition is required to achieve this level of regulation.
The functions of the Tiam1/Bcr complex are not restricted to excitatory synaptogenesis in neurons. We recently showed that Bcr interacts with Tiam1 and members of the partition-defective (Par) polarity complex in cortical astrocytes [28]. The Par complex, composed of Par3, Par6, and atypical protein kinase Cζ (PKCζ), controls cell polarization in many different contexts, including directional cell migration, axon specification, and spine morphogenesis [29]. The Par complex functions in part by recruiting Tiam1 to specialized sites where it promotes local Rac1 activation [30]. We found that Bcr also associates with the Par complex and that Bcr loss in astrocytes leads to faster, more random migration and striking polarity defects in cytoskeletal organization and centrosome orientation [28]. These defects are caused by misregulation of both Rac1 and PKCζ and are rescued by wild-type Bcr, but not by a Bcr mutant that cannot associate with the Par-Tiam1 complex [28]. Thus, Bcr is a member of the Par-Tiam1 complex that controls polarized cell migration by locally restricting Rac1 and PKCζ function.
The Tiam1/Bcr complex may not be unique. Recently, Lim et al. reported a potential neuronal Rac1-specific GEF/GAP complex [31]. Searching for proteins that interact with the scaffold protein CNK2 (Connector enhancer of KSR-2), they identified a complex composed of the Rac1-GAP ARHGAP39/Vilse, the Rac1-GEFs α- and β-PIX, and other Rac1 effectors and PIX modulators as well as Rac1 itself [31]. While a complete functional dissection of this complex is not yet available, they did observe that Vilse, like Bcr, serves as a necessary counterweight against spine and synapse formation. Its interaction with CNK2 is required for proper signaling from this complex, and loss of Vilse leads to Rac1 hyperactivity and aberrant spinogenesis [31].
GEF/GAP complexes for Rho-GTPases may be more common than is appreciated, as they represent a satisfying solution to several problems encountered in Rho-GTPase signaling. First, the ability of such complexes to powerfully limit Rho-GTPase activation is an obvious mechanism for the establishment of the tightly defined regions of Rho-GTPase signaling observed in many cells [32, 33]. By coupling GEF and GAP activities, cells increase the effective GTPase ‘off’ rate, sharply reducing signal spread relative to when GTPase deactivation requires a random encounter with a GAP (Fig. 1B) [32].
Second, inherently modular GEF/GAP complexes could enable rapid alteration of Rho-GTPase signaling modes. Rho-GTPase signaling can be complex, as illustrated by RhoA and Cdc42 signaling at dendritic spines undergoing long-term potentiation (LTP) [34]. Glutamate uncaging increases RhoA and Cdc42 activation in spines [34]. The activity of both GTPases decays rapidly for ~5 minutes, then switches to a slowly decaying phase [34]. During this latter phase, activated RhoA diffuses out of the spine [34]. Though the proteins sculpting these activity patterns are unknown, a RhoA-GEF/GAP complex would be a simple solution. A tightly coupled GEF/GAP complex could account for the fast-decaying, spatially restricted phase, while complex disassembly would switch to a mode of slow decay and spatial spread (Fig. 1C). The temporal dynamics of active Cdc42 could be explained similarly, though it does not escape the spine [34], so mechanisms are required to blunt its spatial spread. Thus, assembly and disassembly of GEF/GAP complexes would allow toggling between different modes of signaling and work together with posttranslational modifications, crosstalk between different GTPases, etc. [32] to achieve the observed complex patterns of Rho-GTPase signaling.
Third, GEF/GAP complexes may assist cells in creating precise Rho-GTPase signaling by coordinating the assembly of signaling complexes (Fig. 1D). GEFs/GAPs are typically large, multidomain proteins. We (and others) have argued that proper Rho-GTPase signaling requires pre-assembly of the components of particular signaling pathways and that the protein-interaction domains of GEFs/GAPs serve as scaffolds on which to do that [9, 35, 36]. A GEF/GAP complex would not only have more binding sites than either protein alone, but different complexes could hypothetically lead to diverse signals, adding another layer of complexity and flexibility to Rho-GTPase signaling.
Receptors signaling to a single GTPase through multiple pathways
Another fascinating phenomenon in Rho-GTPase signaling is modular pathways by which cell-surface receptors signal to a Rho-GTPase via different GEFs. We will consider two cases of this.
The first case involves brain-specific angiogenesis inhibitor 1 (BAI1) (Fig. 2A). BAI1 is an adhesion-G protein-coupled receptor (A-GPCR), and as such possesses a large extracellular N-terminal segment connected to its GPCR moiety via a GAIN domain [37]. BAI1 is expressed in professional phagocytes and binds to the apoptotic cell marker phosphatidylserine (PS), triggering Rac1-dependent engulfment of PS-presenting apoptotic cells [38]. BAI1 also binds lipopolysaccharide (LPS) on gram-negative bacteria, again triggering Rac1-dependent phagocytosis [39]. We demonstrated that BAI1 is present in hippocampal and cortical neurons, where it is enriched in dendritic spines and required for spine and synapse development [40]. Knockdown of BAI1 results in both spine and synapse defects and a dramatic redistribution of activated Rac1 out of spines, suggesting that BAI1 regulates spine and synapse development by inducing synaptic Rac1 activation [40].
While phagocytosis and excitatory synaptogenesis both require Rac1 activation downstream of BAI1, the GEFs differ. Phagocytosis relies on the Rac1-GEF DOCK180 [38], while synaptogenesis requires Tiam1 [40]. ABAI1 mutant that cannot interact with DOCK180/ELMO1 rescues the BAI1 knockdown synapse phenotypes as well as the wild-type protein [40]. Why does a receptor require different GEFs to signal to the same Rho-GTPase? We propose that the Rac1 signals needed to regulate phagocytosis and synaptogenesis differ sufficiently such that the regulation of Rac1’s activity and downstream effectors must also differ. This could be accomplished with different GEFs, and DOCK180 and Tiam1 do differ substantially. DOCK180 interacts with CrkII [41], which binds to the focal adhesion-associated proteins p130 Cas and paxillin and to ezrin-radexin-moesin proteins that link the actin cytoskeleton to membranes [42]. These proteins likely play a role in the cytoskeletal dynamics and membrane distortion required for phagocytosis. In contrast, Tiam1 associates with the Par complex and the synaptic scaffolds spinophilin and IRSp53, which regulate actin dynamics [43–45]. Given the central role the Par complex plays in regulating cellular polarity [29], its cooperation with Tiam1 to form highly polarized excitatory synapses is not surprising. Tiam1 also has a Ras-binding domain, which links it to Ras-dependent pathways important for synapse formation and plasticity [46, 47].
Rac1 is also activated in different ways by EphB2 and NMDA-type glutamate receptors (NMDARs) (Fig. 2B). Activation of EphB2 by ephrin-B leads to Tiam1 phosphorylation and recruitment into EphB2/NMDAR complexes [24, 26]. Tiam1 is required for EphB2-dependent spinogenesis in hippocampal neurons [26], but it is not the only Rac1-GEF in spines that associates with EphB2. The Rac1-GEF Kalirin-7 is also in a complex with EphB2 and synaptic scaffolds such as PSD-95 and SAP102, and recruitment and activation of Kalirin-7 is also necessary for spine development downstream of ephrin-B/EphB2 [48–50]. Moreover, both Tiam1 and Kalirin-7 are activated downstream of NMDARs and necessary for its positive effects on spine growth [24, 51]. However, loss of either protein elicits a phenotype, proving their non-redundancy.
What is the difference between Rac1 signals elicited by EphB2 or NMDAR via Tiam1 versus those via Kalirin-7? One probable difference is the pathways organized by these GEFs (Fig. 2B). As noted above, Tiam1 couples to the small GTPase Rasand a number of proteins that regulate cytoskeletal and membrane dynamics, including the Par polarity complex, spinophilin, and IRSp53. In contrast, Kalirin-7 interacts with a different array of proteins involved in glutamate receptor trafficking, adhesion-dependent signaling, and actin-binding, including PSD-95, SAP102, and AF-6 [52]. The seproteins could modulate Kalirin-7 activity, localization, and/or downstream pathways. Another notable difference between Tiam1 and Kalirin-7 is their expression patterns [53]. Tiam1 expression in the brain is strongly developmentally regulated: in mice, Tiam1 is widely expressed during development beginning around embryonic day E14, whereas its expression is more restricted in the adult [54]. Tiam1 expression remains particularly high in adult brain areas engaged in adult neurogenesis, suggesting an important role in neuronal development [54]. Kalirin-7, in contrast, is not detectable until approximately postnatal day P14, and its expression continues to increase throughout adolescence, suggesting a later role for Kalirin-7 in synapse maturation and maintenance [55, 56].
The presence of multiple mechanisms connecting a single receptor with a single GTPase further emphasizes the high level of specificity required for signal transduction by Rho-family GTPases. The combinatorial nature of these pathways allows cells to tailor signaling in cell-type and developmentally specified ways. It will be interesting to determine if multiple pathways linking single receptors to single Rho GTPases can mediate different effects within the same cell.
Signal coordination between different Rho GTPases
Another feature of Rho-GTPase signaling is that opposing Rho-GTPase signals are often sharply separated in space and time [32]. For example, RhoA, Cdc42 and Rac1 activity zones were spatiotemporally resolved in migrating fibroblasts using biosensors and computational multiplexing [57]. RhoA was found to be active at the leading edge of the cell, whereas Rac1 and Cdc42 activities were maintained approximately 2 μm behind with their activation times trailing that of RhoA by 40 seconds [57]. Such separation of active zones is not unique to fibroblasts. Segregated RhoA and Cdc42 zones form over the meiotic spindle during asymmetric cell division, and mutually exclusive zones occur during single-cell wound healing in Xenopus oocytes [58, 59]. These mutually exclusive zones of activity make sense in neurons, given that neuronal Rac1/Cdc42 and RhoA play opposing roles in so many cellular processes [60]. Although it is unclear how the activities of opposing Rho-GTPases are locally coordinated, crosstalk between Rho-GTPase regulators or effectors could underlie the observed signal segregation. We will discuss mechanisms by which the balance between Rac1/Cdc42 and RhoA maybe achieved.
GEF/GAP complexes that coordinate the activities of opposing Rho-GTPases
One approach to building strongly demarcated Rho-GTPase activation zones would be to tie a GEF for one Rho-GTPase to a GAP for another. This can be accomplished within a single molecule, as exemplified by Bcr and closely related Abr (active Bcr-related), which are both RhoA-GEFs andRac1/Cdc42-GAPs (Fig. 3A). Bcr and Abr are required to maintain mutually exclusive concentric zones of Cdc42 and RhoA activity during wound healing in Xenopus oocytes [61]. Active RhoA recruits Bcr/Abr to the wound edge, where they further activate RhoA and simultaneously inhibit Cdc42, segregating the signals [61].
Bcr and Abr likely mediate the reciprocal relationship between Rac1 and RhoA signaling in mammalian development. We recently reported that the brains of Bcr/Abr knockout (KO) mice exhibit excessive Rac1 activity [23] and display an abnormal anterior cerebellar phenotype similar to that of RhoA KO mice [62]. Bcr/Abr KO and RhoA KO mice both possess irregular folia, ectopic granule cells, disorganizedglial scaffolding and disrupted basal lamina, suggesting that an imbalance between Rho-GTPase activities disturbs cerebellar development [62]. It is possible that, in addition to restricting Rac1 activity, Bcr and Abr serve as Rho-GEFs and their absence results in Rac1-RhoA dysregulation in a region-specific manner. Interestingly, Bcr/Abr single KO mice do not exhibit cerebellar malformation [63], suggesting that Bcr and Abr compensate for each other during cerebellar development. While the phenotypes of Bcr/Abr KO and RhoA KO mice do not completely overlap, the similarities argue that control over the Rac1/RhoA balance is necessary to achieve normal cerebellar architecture.
The GEF and GAP domains in a regulatory pair need not be encoded by the same gene. Kutys and Yamada recently identified a β-PIX/srGAP complex that regulates collagen-stimulated migration in several cell lines [64]. β-PIX mediates collagen-specific migration by activating Cdc42. Knockdown of β-PIX abolishes collagen-stimulated migration and polarized Cdc42 activity and leads to enhanced, de-localized RhoA activity [64]. srGAP1 was identified as a RhoA-GAP that associates with β-PIX at the leading edge of migrating cells [64]. The β-PIX/srGAP complex thus functions similarly to Bcr/Abr in activating its GEF target while inhibiting the opposing Rho-GTPase via its GAP functionality (Fig. 3B).
GEF/GEF complexes targeting opposing Rho-GTPases
Counter intuitively, some GEFs (Trio, UNC-73, Kalirin-9/12)contain two Rho-family GEF domains (Fig. 3A) [65]. One activates Rac1 and the closely related RhoG, while the second activates RhoA, making them dual-function GEFs for opposing Rho-GTPases. Knockdown of Kalirin-9 or Kalirin-12 in developing hippocampal cultures results in decreased dendritic length and complexity [66], while overexpression of Kalirin-9 reduces dendritic length and complexity, but only in mature neurons [66, 67]. Kalirin-9 also mediates p75/nogo receptor-dependent RhoA activation and neurite growth inhibition in response to myelin-associated glycoproteins [68]. It is unclear how these dual function Rho-family GEFs coordinate their Rac1/RhoA-GEF activities, but full functionality of both domains is inconsistent with the highly demarcated activity zones discussed thus far. It is possible that these proteins can quickly switch between their GEF activities and thus rapidly convert active Rac1 zones to active RhoA zones and vice versa and/or that some signals require simultaneous activation of canonically opposing pathways.
Downstream effectors that contribute to Rho-GTPase balance
Rac1 and RhoA signaling cascades also modulate each other’s activity(Fig. 3C). Rac1 binds to and activatesp190-RhoGAP, a RhoA-GAP that regulates dendrite and spine morphogenesis [69, 70]. Rac1 also abrogates RhoA activity by inducing reactive oxygen species(ROS) production, inhibiting LMW-PTP (low-molecular weight tyrosine phosphatase), and increasing phosphorylation and activation of p190-RhoGAP [71]. RhoA can both increase and decrease Rac1 activation. The Rac1-GAP FilGAP is phosphorylated and activated by the RhoA effector ROCK (Rho kinase), leading toRac1 inhibition [72]. In 3T3 fibroblasts, the RhoA effector mDia1 mediates Rac1 activation, which is antagonized by ROCK [73]. How mDia1 activates Rac1 is not completely understood, but appears to involve the formation of a Cas-Crk-DOCK180 Rac1-GEF complex induced by RhoA-mDia1 signaling [73].
Crosstalk between Rho-GTPases also occurs during the establishment of cell polarity(Fig. 3D). Activated Cdc42 recruits the Par complex to sites of polarity development [74], leading toRac1 activation by the Par complex-associated Rac1-GEFs Tiam1/2 [30]. RhoA-activated ROCK can disrupt the Par complex by phosphorylating Par3, thereby inhibiting its interaction with Par6 and aPKC [75]. At synapses, Rac1 activation is spatially restricted via Par3 binding to Tiam1 and confining it to spines, which is essential for proper spine morphogenesis [25]. Surprisingly, Par6 negatively regulates RhoA activity at spines through p190-RhoGAP independently of Par3 [76]. Cdc42, Rac1 and RhoA thus modulate each other through interesting local feedback mechanisms.
Conclusion
The development and function of neurons and many other cells require proper Rho-GTPase signaling. Despite the ubiquity and importance of Rac1, Cdc42, and RhoA signaling, we know relatively little about how the spatiotemporal dynamics of their activity patterns are shaped and how alterations to these patterns leads to cellular and organismal malfunction. Solving these puzzles will give insight into many brain disorders, as altered Rho-GTPase signaling is widely observed in these disorders. Recent studies of Rho-family GEFs and GAPs have yielded exciting new insights into how these signals work. Complexes between regulators of the same and different GTPases, modular signaling pathways, and crosstalk between Rho-GTPase signals are highly promising avenues along which to guide future research.
Acknowledgments
This work was supported by the National Institute of Neurological Disorders and Stroke grant R01NS062829 (K.F.T.) and the National Institute of Mental Health grant K01MH089112 (J.G.D).
Footnotes
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