Abstract
In the title compound, C15H16N2S3 {systematic name: [({[(4-methylphenyl)methyl]sulfanyl}methanethioyl)amino][1-(thiophen-2-yl)ethylidene]amine}, the central CN2S2 residue is almost planar (r.m.s. deviation = 0.0061 Å) and forms dihedral angles of 7.39 (10) and 64.91 (5)° with the thienyl and p-tolyl rings, respectively; the dihedral angle between these rings is 57.52 (6)°. The non-thione S atoms are syn, and with respect to the thione S atom, the benzyl group is anti. In the crystal, centrosymmetrically related molecules self-associate via eight-membered {⋯HNCS}2 synthons. The dimeric aggregates stack along the a axis and are are consolidated into a three-dimensional architecture via methyl-C—H⋯π(benzene) and benzene-C—H⋯π(thienyl) interactions.
Keywords: crystal structure, hydrogen bonding, dithiocarbazate, C—H⋯π interactions
Related literature
For the structure of the parent compound, in which the benzyl residue is syn to the thione S atom, see: Chan et al. (2003 ▸). For the synthesis, see: Tarafder et al. (2002 ▸).
Experimental
Crystal data
C15H16N2S3
M r = 320.48
Monoclinic,
a = 5.6956 (4) Å
b = 14.3424 (9) Å
c = 18.9255 (11) Å
β = 90.263 (5)°
V = 1545.98 (17) Å3
Z = 4
Cu Kα radiation
μ = 4.30 mm−1
T = 150 K
0.15 × 0.10 × 0.06 mm
Data collection
Oxford Diffraction Xcaliber Eos Gemini diffractometer
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▸) T min = 0.774, T max = 1.000
8463 measured reflections
2830 independent reflections
2506 reflections with I > 2σ(I)
R int = 0.023
Refinement
R[F 2 > 2σ(F 2)] = 0.039
wR(F 2) = 0.109
S = 1.06
2830 reflections
186 parameters
1 restraint
H atoms treated by a mixture of independent and constrained refinement
Δρmax = 0.49 e Å−3
Δρmin = −0.33 e Å−3
Data collection: CrysAlis PRO (Agilent, 2011 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2015 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2006 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸).
Supplementary Material
Crystal structure: contains datablock(s) 1, I. DOI: 10.1107/S205698901501107X/hb7439sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901501107X/hb7439Isup2.hkl
. DOI: 10.1107/S205698901501107X/hb7439fig1.tif
The molecular structure of the title compound showing displacement ellipsoids at the 70% probability level.
. DOI: 10.1107/S205698901501107X/hb7439fig2.tif
Overlay diagram of the title compound (red image) with the parent compound (blue). The molecules have been overlapped so that the thienyl residues are coincident.
a . DOI: 10.1107/S205698901501107X/hb7439fig3.tif
A view of the unit-cell contents in projection down the a axis. The N—H⋯S (orange) and C—H⋯π (purple) interactions are shown as dashed lines.
CCDC reference: 1405284
Additional supporting information: crystallographic information; 3D view; checkCIF report
Table 1. Hydrogen-bond geometry (, ).
Cg1 and Cg2 are the centroids of the S3,C3C6 and C8C13 rings, respectively.
| DHA | DH | HA | D A | DHA |
|---|---|---|---|---|
| N1H1NS2i | 0.87(2) | 2.57(2) | 3.4433(18) | 176(3) |
| C2H22Cg2ii | 0.98 | 2.85 | 3.616(3) | 138 |
| C12H12Cg1iii | 0.95 | 2.89 | 3.560(2) | 130 |
Symmetry codes: (i)
; (ii)
; (iii)
.
Acknowledgments
The research was funded by Universiti Putra Malaysia (UPM) under Research University Grant Schemes (RUGS No. 9419400), the Fundamental Research Grant Scheme (FRGS No. 5524425) and the Science Fund (Science Fund No. 06-01-04-SF810). SR thanks the UPM for the award of a Graduate Research Fellowship.
supplementary crystallographic information
S1. Experimental
The title compound was prepared as per a reported procedure (Tarafder et al., 2002). The light-yellow precipitate formed was filtered off and recrystallized from its acetonitrile solution as yellow prisms. Yield 56%; M.pt: 175–177 °C. Anal. Calcd for C15H16N2S3: C, 56.21; H, 5.03; N, 8.74. Found: C, 55.97; H, 4.96; N, 8.10. IR (cm-1, FT—IR): 3143 w, 1511 m, 1060 m, 924 s. 1H-NMR: (DMSO-d6, p.p.m.) δ: 12.42 (s, 1H, NH), 7.24–7.55 (multiplet, 4H, Ar–H), 7.03–7.10 (multiplet, 3H, thiophene-H), 4.37 (s, 2H, –SCH2), 2.24, 2.36 (s, 6H, –CH3), 13 C-NMR:(DMSO-d6, p.p.m.) δ: 197.98 (C=S), 159.15 (C=N), 129.32–142.86 (Ar–C), 128.39–129.90 (thiophene-C), 38.23 (SCH2), 15.58, 21.24 (CH3).
S2. Refinement
Carbon-bound H-atoms were placed in calculated positions (C—H = 0.95 to 0.99 Å) and were included in the refinement in the riding model approximation with Uiso(H) = 1.2–1.5Ueq(C). The N—H atom was refined with N—H = 0.88±0.01 Å, and with Uiso(H) = 1.2Ueq(N).
Figures
Fig. 1.

The molecular structure of the title compound showing displacement ellipsoids at the 70% probability level.
Fig. 2.

Overlay diagram of the title compound (red image) with the parent compound (blue). The molecules have been overlapped so that the thienyl residues are coincident.
Fig. 3.

A view of the unit-cell contents in projection down the a axis. The N—H···S (orange) and C—H···π (purple) interactions are shown as dashed lines.
Crystal data
| C15H16N2S3 | F(000) = 672 |
| Mr = 320.48 | Dx = 1.377 Mg m−3 |
| Monoclinic, P21/c | Cu Kα radiation, λ = 1.54182 Å |
| a = 5.6956 (4) Å | Cell parameters from 3915 reflections |
| b = 14.3424 (9) Å | θ = 3.1–71.3° |
| c = 18.9255 (11) Å | µ = 4.30 mm−1 |
| β = 90.263 (5)° | T = 150 K |
| V = 1545.98 (17) Å3 | Prism, yellow |
| Z = 4 | 0.15 × 0.10 × 0.06 mm |
Data collection
| Oxford Diffraction Xcaliber Eos Gemini diffractometer | 2830 independent reflections |
| Radiation source: fine-focus sealed tube | 2506 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.023 |
| Detector resolution: 16.1952 pixels mm-1 | θmax = 71.3°, θmin = 3.9° |
| ω scans | h = −6→6 |
| Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011) | k = −17→17 |
| Tmin = 0.774, Tmax = 1.000 | l = −16→22 |
| 8463 measured reflections |
Refinement
| Refinement on F2 | 1 restraint |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.109 | w = 1/[σ2(Fo2) + (0.0667P)2 + 0.9619P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.06 | (Δ/σ)max = 0.001 |
| 2830 reflections | Δρmax = 0.49 e Å−3 |
| 186 parameters | Δρmin = −0.33 e Å−3 |
Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.51174 (9) | 0.72659 (3) | 0.42082 (3) | 0.01620 (16) | |
| S2 | 0.71326 (10) | 0.92093 (3) | 0.43627 (3) | 0.02009 (17) | |
| S3 | −0.06660 (10) | 0.60844 (4) | 0.53247 (3) | 0.02183 (17) | |
| N1 | 0.3513 (3) | 0.85288 (12) | 0.50603 (10) | 0.0179 (4) | |
| H1N | 0.339 (5) | 0.9097 (9) | 0.5222 (13) | 0.021* | |
| N2 | 0.1971 (3) | 0.78079 (12) | 0.51907 (10) | 0.0170 (4) | |
| C1 | 0.5185 (4) | 0.83886 (14) | 0.45784 (12) | 0.0171 (4) | |
| C2 | 0.0454 (4) | 0.79016 (15) | 0.56846 (12) | 0.0179 (5) | |
| C2' | 0.0181 (5) | 0.87383 (16) | 0.61556 (13) | 0.0258 (5) | |
| H2'1 | 0.1735 | 0.8977 | 0.6287 | 0.039* | |
| H2'2 | −0.0675 | 0.8559 | 0.6583 | 0.039* | |
| H2'3 | −0.0696 | 0.9224 | 0.5904 | 0.039* | |
| C3 | −0.1146 (4) | 0.71133 (15) | 0.57733 (12) | 0.0174 (4) | |
| C4 | −0.3185 (4) | 0.56050 (16) | 0.56418 (13) | 0.0237 (5) | |
| H4 | −0.3703 | 0.4993 | 0.5530 | 0.028* | |
| C5 | −0.4368 (4) | 0.61936 (17) | 0.60721 (13) | 0.0243 (5) | |
| H5 | −0.5818 | 0.6033 | 0.6286 | 0.029* | |
| C6 | −0.3258 (4) | 0.70718 (14) | 0.61767 (12) | 0.0175 (5) | |
| H6 | −0.3834 | 0.7557 | 0.6470 | 0.021* | |
| C7 | 0.7561 (4) | 0.73279 (15) | 0.35948 (12) | 0.0184 (5) | |
| H7A | 0.7341 | 0.7856 | 0.3265 | 0.022* | |
| H7B | 0.9052 | 0.7421 | 0.3856 | 0.022* | |
| C8 | 0.7625 (4) | 0.64185 (14) | 0.31920 (11) | 0.0165 (4) | |
| C9 | 0.5788 (4) | 0.61510 (15) | 0.27450 (12) | 0.0186 (5) | |
| H9 | 0.4473 | 0.6551 | 0.2684 | 0.022* | |
| C10 | 0.5867 (4) | 0.53072 (15) | 0.23898 (12) | 0.0188 (5) | |
| H10 | 0.4602 | 0.5136 | 0.2087 | 0.023* | |
| C11 | 0.7773 (4) | 0.47032 (15) | 0.24688 (11) | 0.0179 (5) | |
| C11' | 0.7835 (4) | 0.37808 (16) | 0.20945 (14) | 0.0259 (5) | |
| H11A | 0.8516 | 0.3863 | 0.1624 | 0.039* | |
| H11B | 0.6235 | 0.3537 | 0.2048 | 0.039* | |
| H11C | 0.8795 | 0.3341 | 0.2367 | 0.039* | |
| C12 | 0.9610 (4) | 0.49777 (15) | 0.29108 (12) | 0.0179 (5) | |
| H12 | 1.0934 | 0.4581 | 0.2968 | 0.022* | |
| C13 | 0.9533 (4) | 0.58213 (15) | 0.32682 (12) | 0.0177 (5) | |
| H13 | 1.0800 | 0.5993 | 0.3569 | 0.021* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0185 (3) | 0.0122 (3) | 0.0180 (3) | −0.00068 (18) | 0.0030 (2) | −0.00096 (18) |
| S2 | 0.0217 (3) | 0.0135 (3) | 0.0251 (3) | −0.0034 (2) | 0.0057 (2) | −0.0019 (2) |
| S3 | 0.0233 (3) | 0.0177 (3) | 0.0244 (3) | −0.0018 (2) | −0.0013 (2) | −0.0007 (2) |
| N1 | 0.0208 (10) | 0.0120 (8) | 0.0209 (10) | −0.0019 (7) | 0.0041 (8) | −0.0017 (7) |
| N2 | 0.0180 (9) | 0.0139 (8) | 0.0192 (9) | −0.0007 (7) | 0.0008 (7) | 0.0009 (7) |
| C1 | 0.0205 (11) | 0.0131 (10) | 0.0176 (11) | 0.0012 (8) | −0.0015 (9) | −0.0002 (8) |
| C2 | 0.0188 (11) | 0.0159 (10) | 0.0190 (11) | 0.0000 (8) | −0.0014 (9) | −0.0011 (8) |
| C2' | 0.0298 (13) | 0.0226 (11) | 0.0251 (13) | −0.0066 (10) | 0.0095 (10) | −0.0053 (10) |
| C3 | 0.0186 (11) | 0.0169 (10) | 0.0168 (11) | −0.0001 (8) | −0.0023 (9) | −0.0008 (8) |
| C4 | 0.0232 (12) | 0.0205 (11) | 0.0272 (13) | −0.0058 (9) | −0.0092 (10) | 0.0064 (9) |
| C5 | 0.0185 (12) | 0.0320 (13) | 0.0225 (12) | −0.0039 (10) | −0.0024 (9) | 0.0099 (10) |
| C6 | 0.0182 (11) | 0.0146 (10) | 0.0198 (11) | 0.0005 (8) | −0.0076 (9) | 0.0023 (8) |
| C7 | 0.0181 (11) | 0.0168 (10) | 0.0204 (11) | −0.0022 (8) | 0.0061 (9) | −0.0006 (8) |
| C8 | 0.0178 (11) | 0.0160 (10) | 0.0157 (10) | −0.0023 (8) | 0.0052 (8) | 0.0008 (8) |
| C9 | 0.0169 (11) | 0.0199 (10) | 0.0190 (11) | 0.0026 (8) | 0.0012 (9) | 0.0026 (8) |
| C10 | 0.0165 (11) | 0.0230 (11) | 0.0167 (11) | −0.0019 (9) | −0.0008 (9) | 0.0002 (9) |
| C11 | 0.0194 (11) | 0.0179 (10) | 0.0164 (11) | −0.0014 (8) | 0.0038 (9) | −0.0009 (8) |
| C11' | 0.0259 (13) | 0.0222 (11) | 0.0296 (13) | 0.0003 (9) | 0.0008 (10) | −0.0073 (10) |
| C12 | 0.0161 (11) | 0.0179 (10) | 0.0198 (11) | 0.0026 (8) | 0.0003 (9) | 0.0011 (8) |
| C13 | 0.0154 (11) | 0.0203 (10) | 0.0175 (11) | −0.0016 (8) | −0.0008 (9) | 0.0003 (8) |
Geometric parameters (Å, º)
| S1—C1 | 1.756 (2) | C6—H6 | 0.9500 |
| S1—C7 | 1.818 (2) | C7—C8 | 1.511 (3) |
| S2—C1 | 1.670 (2) | C7—H7A | 0.9900 |
| S3—C4 | 1.703 (2) | C7—H7B | 0.9900 |
| S3—C3 | 1.725 (2) | C8—C13 | 1.391 (3) |
| N1—C1 | 1.337 (3) | C8—C9 | 1.396 (3) |
| N1—N2 | 1.379 (3) | C9—C10 | 1.385 (3) |
| N1—H1N | 0.874 (10) | C9—H9 | 0.9500 |
| N2—C2 | 1.283 (3) | C10—C11 | 1.396 (3) |
| C2—C3 | 1.462 (3) | C10—H10 | 0.9500 |
| C2—C2' | 1.503 (3) | C11—C12 | 1.393 (3) |
| C2'—H2'1 | 0.9800 | C11—C11' | 1.501 (3) |
| C2'—H2'2 | 0.9800 | C11'—H11A | 0.9800 |
| C2'—H2'3 | 0.9800 | C11'—H11B | 0.9800 |
| C3—C6 | 1.429 (3) | C11'—H11C | 0.9800 |
| C4—C5 | 1.354 (4) | C12—C13 | 1.387 (3) |
| C4—H4 | 0.9500 | C12—H12 | 0.9500 |
| C5—C6 | 1.423 (3) | C13—H13 | 0.9500 |
| C5—H5 | 0.9500 | ||
| C1—S1—C7 | 101.21 (10) | C8—C7—S1 | 107.47 (14) |
| C4—S3—C3 | 92.08 (12) | C8—C7—H7A | 110.2 |
| C1—N1—N2 | 117.73 (17) | S1—C7—H7A | 110.2 |
| C1—N1—H1N | 115.8 (18) | C8—C7—H7B | 110.2 |
| N2—N1—H1N | 125.9 (18) | S1—C7—H7B | 110.2 |
| C2—N2—N1 | 118.90 (18) | H7A—C7—H7B | 108.5 |
| N1—C1—S2 | 122.48 (16) | C13—C8—C9 | 118.5 (2) |
| N1—C1—S1 | 113.31 (16) | C13—C8—C7 | 120.0 (2) |
| S2—C1—S1 | 124.21 (14) | C9—C8—C7 | 121.5 (2) |
| N2—C2—C3 | 115.14 (19) | C10—C9—C8 | 120.5 (2) |
| N2—C2—C2' | 126.0 (2) | C10—C9—H9 | 119.7 |
| C3—C2—C2' | 118.9 (2) | C8—C9—H9 | 119.7 |
| C2—C2'—H2'1 | 109.5 | C9—C10—C11 | 121.1 (2) |
| C2—C2'—H2'2 | 109.5 | C9—C10—H10 | 119.4 |
| H2'1—C2'—H2'2 | 109.5 | C11—C10—H10 | 119.4 |
| C2—C2'—H2'3 | 109.5 | C12—C11—C10 | 118.0 (2) |
| H2'1—C2'—H2'3 | 109.5 | C12—C11—C11' | 120.9 (2) |
| H2'2—C2'—H2'3 | 109.5 | C10—C11—C11' | 121.1 (2) |
| C6—C3—C2 | 128.3 (2) | C11—C11'—H11A | 109.5 |
| C6—C3—S3 | 111.28 (16) | C11—C11'—H11B | 109.5 |
| C2—C3—S3 | 120.31 (17) | H11A—C11'—H11B | 109.5 |
| C5—C4—S3 | 112.48 (18) | C11—C11'—H11C | 109.5 |
| C5—C4—H4 | 123.8 | H11A—C11'—H11C | 109.5 |
| S3—C4—H4 | 123.8 | H11B—C11'—H11C | 109.5 |
| C4—C5—C6 | 114.4 (2) | C13—C12—C11 | 120.9 (2) |
| C4—C5—H5 | 122.8 | C13—C12—H12 | 119.5 |
| C6—C5—H5 | 122.8 | C11—C12—H12 | 119.5 |
| C5—C6—C3 | 109.7 (2) | C12—C13—C8 | 120.9 (2) |
| C5—C6—H6 | 125.1 | C12—C13—H13 | 119.6 |
| C3—C6—H6 | 125.1 | C8—C13—H13 | 119.6 |
| C1—N1—N2—C2 | 175.2 (2) | C2—C3—C6—C5 | 175.4 (2) |
| N2—N1—C1—S2 | 179.03 (15) | S3—C3—C6—C5 | −1.4 (2) |
| N2—N1—C1—S1 | −1.3 (3) | C1—S1—C7—C8 | −176.13 (15) |
| C7—S1—C1—N1 | 179.94 (17) | S1—C7—C8—C13 | −115.3 (2) |
| C7—S1—C1—S2 | −0.39 (17) | S1—C7—C8—C9 | 63.9 (2) |
| N1—N2—C2—C3 | 178.49 (18) | C13—C8—C9—C10 | 0.3 (3) |
| N1—N2—C2—C2' | −0.5 (3) | C7—C8—C9—C10 | −178.9 (2) |
| N2—C2—C3—C6 | −167.3 (2) | C8—C9—C10—C11 | 0.1 (3) |
| C2'—C2—C3—C6 | 11.7 (3) | C9—C10—C11—C12 | −0.6 (3) |
| N2—C2—C3—S3 | 9.2 (3) | C9—C10—C11—C11' | 178.8 (2) |
| C2'—C2—C3—S3 | −171.73 (17) | C10—C11—C12—C13 | 0.7 (3) |
| C4—S3—C3—C6 | 0.80 (17) | C11'—C11—C12—C13 | −178.7 (2) |
| C4—S3—C3—C2 | −176.29 (18) | C11—C12—C13—C8 | −0.3 (3) |
| C3—S3—C4—C5 | 0.04 (19) | C9—C8—C13—C12 | −0.2 (3) |
| S3—C4—C5—C6 | −0.9 (3) | C7—C8—C13—C12 | 179.1 (2) |
| C4—C5—C6—C3 | 1.5 (3) |
Hydrogen-bond geometry (Å, º)
Cg1 and Cg2 are the centroids of the S3,C3–C6 and C8–C13 rings, respectively.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N1—H1N···S2i | 0.87 (2) | 2.57 (2) | 3.4433 (18) | 176 (3) |
| C2′—H2′2···Cg2ii | 0.98 | 2.85 | 3.616 (3) | 138 |
| C12—H12···Cg1iii | 0.95 | 2.89 | 3.560 (2) | 130 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x−1, −y+1/2, z−1/2; (iii) −x+1, −y+1, −z+1.
Footnotes
Supporting information for this paper is available from the IUCr electronic archives (Reference: HB7439).
References
- Agilent (2011). CrysAlis PRO. Agilent Technologies, Yarnton, England.
- Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany.
- Chan, M.-H. E., Crouse, K. A., Tarafder, M. T. H. & Yamin, B. M. (2003). Acta Cryst. E59, o628–o629.
- Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
- Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8.
- Tarafder, M. T. H., Khoo, T.-J., Crouse, K. A., Ali, A. M., Yamin, B. M. & Fun, H.-K. (2002). Polyhedron, 21, 2691–2698.
- Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) 1, I. DOI: 10.1107/S205698901501107X/hb7439sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901501107X/hb7439Isup2.hkl
. DOI: 10.1107/S205698901501107X/hb7439fig1.tif
The molecular structure of the title compound showing displacement ellipsoids at the 70% probability level.
. DOI: 10.1107/S205698901501107X/hb7439fig2.tif
Overlay diagram of the title compound (red image) with the parent compound (blue). The molecules have been overlapped so that the thienyl residues are coincident.
a . DOI: 10.1107/S205698901501107X/hb7439fig3.tif
A view of the unit-cell contents in projection down the a axis. The N—H⋯S (orange) and C—H⋯π (purple) interactions are shown as dashed lines.
CCDC reference: 1405284
Additional supporting information: crystallographic information; 3D view; checkCIF report
