The title fused heterocycles arose from an unexpected intramolecular cyclization reaction. Each molecule features an intramolecular O—H⋯O hydrogen bond. In the crystal, chains mediated by C—H⋯O interactions arise.
Keywords: crystal structure, thiazole, conformation, supramolecular structure, hydrogen bonding, π–π stacking interactions
Abstract
The title compounds, 6-(2-hydroxybenzyl)-5H-thiazolo[3,2-a]pyrimidin-5-one, C13H8N2O3S, (1), and 6-(2-hydroxybenzyl)-3-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one, C14H10N2O3S, (2), were synthesized when a chromone-3-carboxylic acid, activated with (benzotriazol-1-yloxy)tripyrrolidinylphosphonium hexafluoridophosphate (PyBOP), was reacted with a primary heteromamine. Instead of the expected amidation, the unusual title thiazolopyrimidine-5-one derivatives were obtained serendipitously and a mechanism of formation is proposed. Both compounds present an intramolecular O—H⋯O hydrogen bond, which generates an S(6) ring. The dihedral angles between the heterocyclic moiety and the 2-hydroxybenzoyl ring are 55.22 (5) and 46.83 (6)° for (1) and (2), respectively. In the crystals, the molecules are linked by weak C—H⋯O hydrogen bonds and π–π stacking interactions.
Chemical context
Although heterocycles, namely those bearing thiazole or pyrimidine motifs, are reported to show a broad spectrum of pharmacological properties such as antimicrobial, anticancer and anti-inflammatory activities (Jiang et al., 2013 ▸; Mishra et al., 2015 ▸; Perrone et al., 2012 ▸), only a few compounds enclosing the thiazolo[3,2a]pyrimidine framework have been explored and screened towards the above-mentioned pharmacological activities. Even though some derivatives tested up to now have shown interesting anti-inflammatory (Bekhit et al., 2003 ▸), antiviral (Abd El-Galil et al., 2010 ▸) and antibacterial activities (Mulwad et al., 2010 ▸) and as calcium agonists (Balkan et al., 1992 ▸), the data acquired so far are insufficient to indicate the importance of the thiazolo[3,2a]pyrimidine motif as a positive contributor to the biological profile mentioned above. The same reflection is valid in relation to the data acquired for some thiazolo[3,2a]pyrimidine-5-one derivatives as 5-HT2a receptor antagonists, a putative therapeutic target for the treatment of depression, although they have structural similarity to ritanserin, a serotonin antagonist (Awadallah, 2008 ▸). In this last case, the pharmacological activity appears to be enhanced by the nature of the planar aromatic or heterocyclic ring systems, the type of spacer as well as the presence of a basic nitrogen atom.
A search made in the latest version (5.36.0; 2015) of the Cambridge Structural Database (Groom & Allen, 2014 ▸) for thiazolo[3,2a]pyrimidine-5-one-based structures revealed the existence of 11 compounds containing the 5H-thiazolo[3,2a]-pyrimidine-5-one fragment in which the hetero ring was not fused with other cyclic rings. In order to clarify the significance of the thiazolo[3,2a]pyrimidine scaffold in medicinal chemistry, new 5H-thiazolo[3,2-a]pyrimidin-5-one derivatives were synthesized. In this work we report the structures and synthesis, by a one-pot reaction, of two derivatives 6-(2-hydroxybenzyl)-5H-thiazolo[3,2-a]pyrimidin-5-one (1) and 6-(2-hydroxybenzyl)-5H-thiazolo[3,2-a]pyrimidin-3-methyl-5-one (2), which will be screened for antimicrobial activity.
Structural commentary
The molecules of (1) and (2) are shown in Figs. 1 ▸ and 2 ▸. The structural characterization reveals that the molecules have two cyclic units, viz. the hydroxybenzyl and the heterocyclic 5H-thiazolo[3,2-a]pyrimidin-5-one ring separated by a carbonyl spacer, as expected. In both compounds, the carbonyl O atoms are trans oriented with respect to each other, contributing to the establishment of an intramolecular O—H⋯O hydrogen bond between the o-hydroxyl group of the benzene ring and the carbonyl group of the spacer (Tables 1 ▸ and 2 ▸), which generates an S(6) ring. Taken together, the benzene ring and hydrogen-bonded pseudo ring are roughly planar, the carbonyl oxygen atom deviates by 0.391 (3) and 0.055 (4) Å in (1) and (2), respectively from the least-square plane formed by the benzene ring atoms. The heterocyclic rings of both compounds are also almost planar, as expected; the maximum deviation from the best plane formed by the ten atoms of the thiazolopyrimidine moiety is 0.103 (1) Å for the carbonyl oxygen atom, O5, in (1) and 0.129 (1) Å for the same atom in (2). Thus, both molecules are twisted around the C6—C67 bond that links the ring systems, which are inclined to one another by 55.22 (5) and 46.83 (6)° for (1) and (2), respectively.
Figure 1.
A view of the asymmetric unit of (1) with displacement ellipsoids drawn at the 70% probability level.
Figure 2.
A view of the asymmetric unit of (2) with displacement ellipsoids drawn at the 70% probability level.
Table 1. Hydrogen-bond geometry (Å, °) for (1) .
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O62—H62A⋯O67 | 0.84 | 1.87 | 2.5906 (16) | 144 |
| C2—H2⋯O5i | 0.95 | 2.29 | 3.146 (2) | 150 |
Symmetry code: (i)
.
Table 2. Hydrogen-bond geometry (Å, °) for (2) .
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O62—H3⋯O67 | 0.84 | 1.81 | 2.557 (2) | 146 |
| C64—H64⋯O5i | 0.95 | 2.57 | 3.217 (3) | 125 |
Symmetry code: (i)
.
Supramolecular features
As noted above, the hydroxyl group is involved in intramolecular hydrogen bonding, which leaves it unavailable for participation in intermolecular hydrogen bonding. Thus, the molecules are linked via weak C—H⋯O interactions: in both compounds the oxygen acceptor atom is the oxo atom O5, being in (1) the hydrogen-bond donor atom is C2 (of the heterocyclic group) and in (2) the hydrogen-bond donor atom is C64 (located in the exocyclic benzene ring).
In (1) the molecules are linked by the C2—H2⋯O5 (x +
, −y +
, z +
) hydrogen bond, forming a C(6) chain, which runs parallel to [101] and results from the action of a c-glide at (0,
, 0) (Table 1 ▸ and Fig. 3 ▸). The presence of the methyl group on atom C2 of the heterocyclic ring precludes the formation of a similar bond in (2). Thus in the supramolecular structure of this compound, the molecules are linked by a C64—H64⋯O5(−x + 2, y +
, −z + 1) hydrogen bond, forming a C(9) chain, which runs parallel to the b-axis direction and results from the action of a 21 screw axis at (1, y,
) (Table 2 ▸ and Fig. 4 ▸).
Figure 3.
Compound (1): Molecular C6 chain which runs parallel to [101]. Symmetry codes: (i) x +
, −y +
, z +
; (ii) x −
, −y +
, z −
. Hydrogen atoms not involved in the hydrogen bonding are omitted.
Figure 4.
Compound (2): Molecular C9 chain which runs parallel to the a-axis direction. Symmetry codes: (i) −x + 2, y +
, −z + 1; (ii) −x + 2, y −
, −z + 1. Hydrogen atoms not involved in the hydrogen bonding are omitted.
Both molecules present aromatic π–π stacking contacts. In (1) there is a close contact between centrosymmetrically related rings containing atom C5 at (x, y, z) and (−x + 1, −y + 1, −z + 1) [centroid-to-centroid distance = 3.6764 (9) Å, perpendicular distance between rings = 3.2478 (6) Å and slippage = 1.723 Å]. In (2) the molecules stack above each other along the a-axis direction with unit translation of 3.931 (2) Å [perpendicular distances between the rings (and slippages) of 3.3821 (9) (2.004), 3.3355 (9) (2.080), 3.4084 (9) (1.958) Å for the thiazole, pyrimidine and benzene rings, respectively].
Database survey
As said before, a search made in the latest version (5.36.0; 2015) of the Cambridge Structural Database revealed the existence of 11 deposited compounds containing the 5H-thiazolo[3,2a]-pyrimidine-5-one residue. Of those, eight were 2,3-dihydro derivatives thus leaving only the compounds listed below. Fig. 5 ▸ shows representations of the compounds referred to in this work (the scaffold indicates the adopted numbering scheme for the 5H-thiazolo[3,2a]-pyrimidine-5-one residue). Compounds (1) and (2) are herein characterized and the remaining are referred to by their CSD codes. GEFTES: 7-(methylsulfanyl)-5H-[1,3]thiazolo[3,2-a]pyrimidin-5-one (Bernhardt & Wentrup, 2012 ▸); JABRAG: 7-pentafluoroethyl-6-trifluoromethylthiazolo[3,2-a]pyrimidine-5-one (Chi et al., 2002 ▸); NAMWEE: N-phenyl-6-methyl-5-oxo-5H-[1,3]-thiazolo[3,2-a]pyrimidine-2-carboxamide (Volovenko et al., 2004 ▸); QIBNOF: 3-ethyl-2-(4-methylthiazol-2-yl)thiazolo[3,2-a]pyrimidin-4-one (Troisi et al., 2006 ▸); and TUFCAY: 3-benzoyl-7-methyl-5H-thiazolo[3,2-a]pyrimidine-5-one (Elokhina et al., 1996 ▸). In those compounds, the C2—C3 bond length averages 1.329 (9) Å, typical for values for a Csp 2—Csp 2 bond length in thiophenes (Allen et al., 1987 ▸). The average length of the C3—N4 bond at 1.397 (6) Å is slightly shorter than that for N4—C5, which is 1.418 (7) Å. The average values for the N4—C9 and C7—N8 bond lengths, 1.363 (7) and 1.357 (12) Å, respectively, are significantly shorter than the previous ones, suggesting the presence of a higher electronic density in that part of the rings. The N8—C9 average of 1.306 (9) Å is typical of a C=N bond.
Figure 5.
Representations of the compounds referred to in this work (the scaffold indicates the adopted numbering scheme for the 5H-thiazolo[3,2a]-pyrimidine-5-one residue).
Synthesis and crystallization
Compounds (1) and (2) were synthesized in moderate/high yields by a one-pot reaction using 4-oxo-4H-chromene-3-carboxylic acid as the starting material. Chromone-3-carboxylic acid was initially activated with benzotriazol-1-yl-oxytripyrrolidinophosphonium hexafluoridophosphate (PyBOP). Then the in situ formed intermediate reacts with the heteroamine (stoichiometry 1:1) giving rise to 5H-thiazolo[3,2-a]pyrimidin-5-one derivatives (1) (68%) and (2) (81%). From a mechanistic point of view, the 6-(2-hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one derivatives may have been obtained by a nucleophilic attack of primary heteroamine to the 2-position of the activated chromone with a subsequent opening of the pyran ring. Then, the heterocycle entities were obtained by a process involving an intramolecular reaction assisted by the nitrogen atom of the heterocycle moiety (see scheme below). Crystals were obtained by recrystallization from (1) in AcOEt (m.p. 454–456 K) in the form of colourless plates and from (2) in CH2Cl2 (m.p. 451–453 K) in the form of yellow blocks.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. H atoms were positioned geometrically and treated as riding atoms with C—H(aromatic) = 0.95 and O—H = 0.84 Å with U iso = 1.2U eq(C) or 1.5U eq(O).
Table 3. Experimental details.
| (1) | (2) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C13H8N2O3S | C14H10N2O3S |
| M r | 272.27 | 286.30 |
| Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21 |
| Temperature (K) | 100 | 100 |
| a, b, c (Å) | 7.5563 (5), 15.3187 (11), 10.1229 (7) | 3.931 (2), 10.459 (6), 14.657 (8) |
| β (°) | 99.49 (2) | 94.201 (14) |
| V (Å3) | 1155.70 (15) | 601.0 (6) |
| Z | 4 | 2 |
| Radiation type | Mo Kα | Mo Kα |
| μ (mm−1) | 0.29 | 0.28 |
| Crystal size (mm) | 0.33 × 0.21 × 0.04 | 0.26 × 0.13 × 0.09 |
| Data collection | ||
| Diffractometer | Rigaku Saturn724+ | Rigaku Saturn724+ |
| Absorption correction | Multi-scan CrystalClear-SM Expert (Rigaku, 2012 ▸) | Multi-scan CrystalClear-SM Expert (Rigaku, 2012 ▸) |
| T min, T max | 0.912, 0.989 | 0.931, 0.975 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 7713, 2632, 2135 | 4859, 3175, 2808 |
| R int | 0.040 | 0.023 |
| (sin θ/λ)max (Å−1) | 0.649 | 0.729 |
| Refinement | ||
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.036, 0.096, 1.02 | 0.031, 0.067, 1.04 |
| No. of reflections | 2632 | 3175 |
| No. of parameters | 172 | 183 |
| No. of restraints | 0 | 1 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.38, −0.22 | 0.35, −0.34 |
| Absolute structure | – | Flack x determined using 981 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) |
| Absolute structure parameter | – | −0.03 (4) |
Supplementary Material
Crystal structure: contains datablock(s) general, 1, 2. DOI: 10.1107/S2056989015011044/hb7437sup1.cif
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989015011044/hb74371sup2.hkl
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989015011044/hb74372sup3.hkl
Supporting information file. DOI: 10.1107/S2056989015011044/hb74371sup4.cml
Supporting information file. DOI: 10.1107/S2056989015011044/hb74372sup5.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors thank the staff at the National Crystallographic Service, University of Southampton, for the data collection, help and advice, (Coles & Gale, 2012 ▸) and the Foundation for Science and Technology (FCT) of Portugal (QUI/UI0081/2015). FC (SFRH/BPD/74491/2010) is supported by FCT grant.
supplementary crystallographic information
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Crystal data
| C13H8N2O3S | F(000) = 560 |
| Mr = 272.27 | Dx = 1.565 Mg m−3 |
| Monoclinic, P21/n | Mo Kα radiation, λ = 0.71075 Å |
| a = 7.5563 (5) Å | Cell parameters from 7040 reflections |
| b = 15.3187 (11) Å | θ = 2.4–27.5° |
| c = 10.1229 (7) Å | µ = 0.28 mm−1 |
| β = 99.49 (2)° | T = 100 K |
| V = 1155.70 (15) Å3 | Plate, colourless |
| Z = 4 | 0.33 × 0.21 × 0.04 mm |
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Data collection
| Rigaku Saturn724+ (2x2 bin mode) diffractometer | 2632 independent reflections |
| Radiation source: Sealed Tube | 2135 reflections with I > 2σ(I) |
| Graphite Monochromator monochromator | Rint = 0.040 |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
| profile data from ω–scans | h = −8→9 |
| Absorption correction: multi-scan CrystalClear-SM Expert (Rigaku, 2012) | k = −16→19 |
| Tmin = 0.912, Tmax = 0.989 | l = −13→10 |
| 7713 measured reflections |
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Refinement
| Refinement on F2 | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
| wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0485P)2 + 0.3293P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.02 | (Δ/σ)max = 0.001 |
| 2632 reflections | Δρmax = 0.38 e Å−3 |
| 172 parameters | Δρmin = −0.22 e Å−3 |
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.53044 (5) | 0.47242 (3) | 0.82245 (4) | 0.01896 (13) | |
| O5 | 0.13953 (16) | 0.30924 (7) | 0.48703 (11) | 0.0220 (3) | |
| O62 | −0.16684 (15) | 0.43565 (8) | 0.04276 (11) | 0.0244 (3) | |
| H62A | −0.1549 | 0.4787 | 0.0949 | 0.037* | |
| O67 | −0.03352 (15) | 0.51893 (7) | 0.25912 (11) | 0.0202 (3) | |
| N4 | 0.32960 (17) | 0.39593 (9) | 0.62970 (12) | 0.0153 (3) | |
| N8 | 0.35861 (18) | 0.54953 (9) | 0.59756 (13) | 0.0182 (3) | |
| C2 | 0.4957 (2) | 0.36098 (11) | 0.83142 (15) | 0.0200 (3) | |
| H2 | 0.5482 | 0.3254 | 0.9044 | 0.024* | |
| C3 | 0.3863 (2) | 0.33073 (11) | 0.72355 (15) | 0.0184 (3) | |
| H3 | 0.3510 | 0.2713 | 0.7121 | 0.022* | |
| C5 | 0.2084 (2) | 0.38137 (11) | 0.50752 (15) | 0.0167 (3) | |
| C6 | 0.1834 (2) | 0.45847 (10) | 0.42710 (14) | 0.0157 (3) | |
| C7 | 0.2532 (2) | 0.53721 (11) | 0.47770 (15) | 0.0174 (3) | |
| H7 | 0.2244 | 0.5873 | 0.4232 | 0.021* | |
| C9 | 0.3934 (2) | 0.47688 (10) | 0.66844 (15) | 0.0159 (3) | |
| C61 | 0.1006 (2) | 0.39010 (10) | 0.19292 (14) | 0.0162 (3) | |
| C62 | −0.0209 (2) | 0.38331 (11) | 0.07150 (15) | 0.0184 (3) | |
| C63 | 0.0072 (2) | 0.32092 (11) | −0.02354 (16) | 0.0219 (4) | |
| H62 | −0.0774 | 0.3146 | −0.1035 | 0.026* | |
| C64 | 0.1571 (2) | 0.26854 (11) | −0.00138 (16) | 0.0217 (4) | |
| H64 | 0.1752 | 0.2264 | −0.0666 | 0.026* | |
| C65 | 0.2832 (2) | 0.27646 (11) | 0.11565 (16) | 0.0201 (3) | |
| H65 | 0.3881 | 0.2413 | 0.1289 | 0.024* | |
| C66 | 0.2531 (2) | 0.33623 (10) | 0.21201 (15) | 0.0178 (3) | |
| H66 | 0.3372 | 0.3409 | 0.2926 | 0.021* | |
| C67 | 0.0738 (2) | 0.45816 (10) | 0.29057 (15) | 0.0160 (3) |
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0213 (2) | 0.0200 (2) | 0.01334 (19) | −0.00121 (15) | −0.00382 (14) | 0.00147 (15) |
| O5 | 0.0276 (6) | 0.0188 (6) | 0.0182 (6) | −0.0057 (5) | −0.0003 (5) | −0.0008 (4) |
| O62 | 0.0242 (6) | 0.0272 (7) | 0.0184 (6) | 0.0057 (5) | −0.0068 (5) | −0.0042 (5) |
| O67 | 0.0210 (6) | 0.0209 (6) | 0.0167 (5) | 0.0045 (5) | −0.0025 (4) | −0.0006 (4) |
| N4 | 0.0172 (6) | 0.0143 (7) | 0.0140 (6) | 0.0011 (5) | 0.0008 (5) | 0.0005 (5) |
| N8 | 0.0209 (7) | 0.0164 (7) | 0.0151 (6) | 0.0003 (5) | −0.0038 (5) | −0.0002 (5) |
| C2 | 0.0231 (8) | 0.0204 (9) | 0.0160 (7) | 0.0034 (6) | 0.0019 (6) | 0.0034 (6) |
| C3 | 0.0235 (8) | 0.0150 (8) | 0.0166 (7) | 0.0028 (6) | 0.0033 (6) | 0.0039 (6) |
| C5 | 0.0161 (7) | 0.0188 (9) | 0.0148 (7) | −0.0002 (6) | 0.0015 (6) | −0.0025 (6) |
| C6 | 0.0164 (7) | 0.0177 (9) | 0.0122 (7) | 0.0015 (6) | −0.0004 (6) | −0.0016 (6) |
| C7 | 0.0181 (7) | 0.0174 (9) | 0.0154 (7) | 0.0019 (6) | −0.0014 (6) | 0.0008 (6) |
| C9 | 0.0158 (7) | 0.0156 (8) | 0.0153 (7) | 0.0001 (6) | −0.0007 (6) | −0.0009 (6) |
| C61 | 0.0179 (7) | 0.0161 (8) | 0.0136 (7) | −0.0025 (6) | 0.0002 (6) | −0.0002 (6) |
| C62 | 0.0193 (7) | 0.0181 (9) | 0.0164 (7) | −0.0009 (6) | −0.0013 (6) | 0.0013 (6) |
| C63 | 0.0283 (8) | 0.0211 (9) | 0.0145 (7) | −0.0042 (7) | −0.0017 (6) | −0.0004 (6) |
| C64 | 0.0328 (9) | 0.0163 (9) | 0.0165 (7) | −0.0029 (7) | 0.0059 (7) | −0.0021 (6) |
| C65 | 0.0241 (8) | 0.0163 (9) | 0.0200 (8) | 0.0015 (6) | 0.0043 (6) | 0.0006 (6) |
| C66 | 0.0196 (8) | 0.0171 (9) | 0.0160 (7) | −0.0015 (6) | 0.0007 (6) | 0.0005 (6) |
| C67 | 0.0153 (7) | 0.0162 (8) | 0.0158 (7) | −0.0014 (6) | 0.0004 (6) | 0.0016 (6) |
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Geometric parameters (Å, º)
| S1—C9 | 1.7248 (16) | C6—C7 | 1.381 (2) |
| S1—C2 | 1.7318 (17) | C6—C67 | 1.489 (2) |
| O5—C5 | 1.225 (2) | C7—H7 | 0.9500 |
| O62—C62 | 1.3559 (19) | C61—C66 | 1.404 (2) |
| O62—H62A | 0.8405 | C61—C62 | 1.411 (2) |
| O67—C67 | 1.2413 (19) | C61—C67 | 1.473 (2) |
| N4—C9 | 1.364 (2) | C62—C63 | 1.397 (2) |
| N4—C3 | 1.396 (2) | C63—C64 | 1.376 (2) |
| N4—C5 | 1.4298 (19) | C63—H62 | 0.9500 |
| N8—C9 | 1.327 (2) | C64—C65 | 1.397 (2) |
| N8—C7 | 1.3503 (19) | C64—H64 | 0.9500 |
| C2—C3 | 1.339 (2) | C65—C66 | 1.384 (2) |
| C2—H2 | 0.9500 | C65—H65 | 0.9500 |
| C3—H3 | 0.9500 | C66—H66 | 0.9500 |
| C5—C6 | 1.429 (2) | ||
| C9—S1—C2 | 90.74 (7) | N4—C9—S1 | 110.78 (11) |
| C62—O62—H62A | 109.3 | C66—C61—C62 | 118.53 (14) |
| C9—N4—C3 | 113.61 (13) | C66—C61—C67 | 121.59 (14) |
| C9—N4—C5 | 122.40 (13) | C62—C61—C67 | 119.65 (14) |
| C3—N4—C5 | 123.91 (13) | O62—C62—C63 | 117.85 (14) |
| C9—N8—C7 | 113.80 (14) | O62—C62—C61 | 122.18 (14) |
| C3—C2—S1 | 112.14 (12) | C63—C62—C61 | 119.97 (15) |
| C3—C2—H2 | 123.9 | C64—C63—C62 | 120.06 (15) |
| S1—C2—H2 | 123.9 | C64—C63—H62 | 120.0 |
| C2—C3—N4 | 112.72 (15) | C62—C63—H62 | 120.0 |
| C2—C3—H3 | 123.6 | C63—C64—C65 | 121.00 (15) |
| N4—C3—H3 | 123.6 | C63—C64—H64 | 119.5 |
| O5—C5—N4 | 118.75 (14) | C65—C64—H64 | 119.5 |
| O5—C5—C6 | 129.54 (14) | C66—C65—C64 | 119.14 (15) |
| N4—C5—C6 | 111.69 (13) | C66—C65—H65 | 120.4 |
| C7—C6—C5 | 120.26 (14) | C64—C65—H65 | 120.4 |
| C7—C6—C67 | 117.84 (14) | C65—C66—C61 | 121.21 (15) |
| C5—C6—C67 | 121.81 (13) | C65—C66—H66 | 119.4 |
| N8—C7—C6 | 126.02 (15) | C61—C66—H66 | 119.4 |
| N8—C7—H7 | 117.0 | O67—C67—C61 | 120.99 (14) |
| C6—C7—H7 | 117.0 | O67—C67—C6 | 118.38 (14) |
| N8—C9—N4 | 125.30 (14) | C61—C67—C6 | 120.53 (13) |
| N8—C9—S1 | 123.91 (12) | ||
| C9—S1—C2—C3 | −0.18 (13) | C2—S1—C9—N8 | −179.59 (14) |
| S1—C2—C3—N4 | 0.97 (18) | C2—S1—C9—N4 | −0.67 (12) |
| C9—N4—C3—C2 | −1.52 (19) | C66—C61—C62—O62 | −176.96 (15) |
| C5—N4—C3—C2 | −178.23 (13) | C67—C61—C62—O62 | −2.4 (2) |
| C9—N4—C5—O5 | −171.08 (14) | C66—C61—C62—C63 | 3.3 (2) |
| C3—N4—C5—O5 | 5.4 (2) | C67—C61—C62—C63 | 177.80 (14) |
| C9—N4—C5—C6 | 7.34 (19) | O62—C62—C63—C64 | 177.45 (15) |
| C3—N4—C5—C6 | −176.23 (13) | C61—C62—C63—C64 | −2.8 (2) |
| O5—C5—C6—C7 | 170.03 (16) | C62—C63—C64—C65 | 0.1 (3) |
| N4—C5—C6—C7 | −8.2 (2) | C63—C64—C65—C66 | 1.9 (2) |
| O5—C5—C6—C67 | −6.4 (3) | C64—C65—C66—C61 | −1.4 (2) |
| N4—C5—C6—C67 | 175.39 (13) | C62—C61—C66—C65 | −1.2 (2) |
| C9—N8—C7—C6 | 0.0 (2) | C67—C61—C66—C65 | −175.63 (14) |
| C5—C6—C7—N8 | 5.1 (2) | C66—C61—C67—O67 | 161.58 (15) |
| C67—C6—C7—N8 | −178.29 (14) | C62—C61—C67—O67 | −12.8 (2) |
| C7—N8—C9—N4 | −1.1 (2) | C66—C61—C67—C6 | −14.7 (2) |
| C7—N8—C9—S1 | 177.67 (11) | C62—C61—C67—C6 | 170.93 (14) |
| C3—N4—C9—N8 | −179.75 (14) | C7—C6—C67—O67 | −40.9 (2) |
| C5—N4—C9—N8 | −3.0 (2) | C5—C6—C67—O67 | 135.67 (15) |
| C3—N4—C9—S1 | 1.35 (16) | C7—C6—C67—C61 | 135.52 (15) |
| C5—N4—C9—S1 | 178.12 (10) | C5—C6—C67—C61 | −48.0 (2) |
(1) 6-(2-Hydroxybenzoyl)-5H-thiazolo[3,2-a]pyrimidin-5-one . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O62—H62A···O67 | 0.84 | 1.87 | 2.5906 (16) | 144 |
| C2—H2···O5i | 0.95 | 2.29 | 3.146 (2) | 150 |
Symmetry code: (i) x+1/2, −y+1/2, z+1/2.
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Crystal data
| C14H10N2O3S | F(000) = 296 |
| Mr = 286.30 | Dx = 1.582 Mg m−3 |
| Monoclinic, P21 | Mo Kα radiation, λ = 0.71075 Å |
| a = 3.931 (2) Å | Cell parameters from 1337 reflections |
| b = 10.459 (6) Å | θ = 2.4–31.1° |
| c = 14.657 (8) Å | µ = 0.28 mm−1 |
| β = 94.201 (14)° | T = 100 K |
| V = 601.0 (6) Å3 | Block, yellow |
| Z = 2 | 0.26 × 0.13 × 0.09 mm |
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Data collection
| Rigaku Saturn724+ (2x2 bin mode) diffractometer | 3175 independent reflections |
| Radiation source: Rotating Anode | 2808 reflections with I > 2σ(I) |
| Confocal monochromator | Rint = 0.023 |
| Detector resolution: 28.5714 pixels mm-1 | θmax = 31.2°, θmin = 2.4° |
| profile data from ω–scans | h = −5→5 |
| Absorption correction: multi-scan CrystalClear-SM Expert (Rigaku, 2012) | k = −14→14 |
| Tmin = 0.931, Tmax = 0.975 | l = −18→20 |
| 4859 measured reflections |
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.031 | w = 1/[σ2(Fo2) + (0.0296P)2] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.067 | (Δ/σ)max < 0.001 |
| S = 1.04 | Δρmax = 0.35 e Å−3 |
| 3175 reflections | Δρmin = −0.33 e Å−3 |
| 183 parameters | Absolute structure: Flack x determined using 981 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| 1 restraint | Absolute structure parameter: −0.03 (4) |
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Special details
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.15253 (13) | 0.38511 (5) | 0.04641 (4) | 0.01618 (13) | |
| O62 | 0.9984 (4) | 1.04996 (14) | 0.34842 (12) | 0.0214 (4) | |
| H3 | 0.9814 | 1.0301 | 0.2927 | 0.032* | |
| O5 | 0.8745 (4) | 0.55020 (15) | 0.29853 (11) | 0.0183 (3) | |
| O67 | 0.8149 (4) | 0.91654 (14) | 0.20714 (11) | 0.0197 (4) | |
| N4 | 0.4972 (4) | 0.49139 (17) | 0.17956 (13) | 0.0138 (4) | |
| N8 | 0.2366 (5) | 0.63883 (18) | 0.07249 (13) | 0.0159 (4) | |
| C2 | 0.3438 (5) | 0.2885 (2) | 0.13351 (16) | 0.0155 (4) | |
| C3 | 0.5170 (5) | 0.3595 (2) | 0.19717 (15) | 0.0155 (5) | |
| H3A | 0.6412 | 0.3241 | 0.2492 | 0.019* | |
| C5 | 0.6695 (5) | 0.5856 (2) | 0.23699 (16) | 0.0146 (4) | |
| C6 | 0.5742 (5) | 0.7132 (2) | 0.20851 (15) | 0.0129 (4) | |
| C7 | 0.3746 (5) | 0.7315 (2) | 0.12859 (16) | 0.0156 (4) | |
| H7 | 0.3288 | 0.8175 | 0.1108 | 0.019* | |
| C9 | 0.3047 (5) | 0.5225 (2) | 0.10207 (15) | 0.0143 (4) | |
| C21 | 0.3011 (6) | 0.1472 (2) | 0.13112 (17) | 0.0196 (5) | |
| H21A | 0.4177 | 0.1097 | 0.1861 | 0.029* | |
| H21B | 0.3997 | 0.1128 | 0.0767 | 0.029* | |
| H21C | 0.0578 | 0.1260 | 0.1289 | 0.029* | |
| C61 | 0.7116 (5) | 0.8455 (2) | 0.35577 (15) | 0.0142 (4) | |
| C62 | 0.8621 (5) | 0.9562 (2) | 0.39773 (16) | 0.0157 (5) | |
| C63 | 0.8759 (5) | 0.9700 (2) | 0.49229 (17) | 0.0177 (5) | |
| H63 | 0.9829 | 1.0429 | 0.5205 | 0.021* | |
| C64 | 0.7340 (5) | 0.8779 (2) | 0.54512 (15) | 0.0182 (4) | |
| H64 | 0.7464 | 0.8878 | 0.6097 | 0.022* | |
| C65 | 0.5725 (5) | 0.7705 (2) | 0.50554 (16) | 0.0174 (5) | |
| H65 | 0.4721 | 0.7087 | 0.5427 | 0.021* | |
| C66 | 0.5602 (5) | 0.7550 (2) | 0.41204 (15) | 0.0151 (4) | |
| H66 | 0.4483 | 0.6824 | 0.3849 | 0.018* | |
| C67 | 0.7112 (5) | 0.8297 (2) | 0.25681 (15) | 0.0150 (4) |
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0175 (2) | 0.0166 (3) | 0.0143 (2) | −0.0011 (2) | −0.00033 (18) | −0.0012 (2) |
| O62 | 0.0274 (8) | 0.0165 (8) | 0.0203 (9) | −0.0060 (7) | 0.0026 (7) | 0.0000 (7) |
| O5 | 0.0213 (8) | 0.0179 (8) | 0.0148 (8) | 0.0035 (7) | −0.0049 (7) | −0.0009 (7) |
| O67 | 0.0249 (8) | 0.0161 (9) | 0.0182 (8) | −0.0015 (6) | 0.0026 (6) | 0.0025 (6) |
| N4 | 0.0149 (8) | 0.0143 (10) | 0.0121 (9) | 0.0016 (7) | 0.0009 (7) | 0.0007 (7) |
| N8 | 0.0173 (9) | 0.0180 (10) | 0.0124 (9) | 0.0006 (8) | −0.0001 (7) | −0.0003 (8) |
| C2 | 0.0154 (10) | 0.0164 (11) | 0.0150 (11) | −0.0002 (9) | 0.0032 (8) | 0.0009 (9) |
| C3 | 0.0165 (9) | 0.0159 (12) | 0.0144 (11) | 0.0029 (8) | 0.0025 (8) | 0.0032 (8) |
| C5 | 0.0138 (9) | 0.0173 (11) | 0.0131 (11) | −0.0003 (9) | 0.0026 (8) | −0.0023 (9) |
| C6 | 0.0157 (9) | 0.0119 (10) | 0.0114 (11) | 0.0004 (8) | 0.0033 (8) | 0.0001 (8) |
| C7 | 0.0178 (10) | 0.0147 (11) | 0.0144 (11) | 0.0016 (9) | 0.0027 (8) | 0.0010 (8) |
| C9 | 0.0124 (9) | 0.0179 (11) | 0.0123 (11) | 0.0008 (9) | 0.0000 (8) | −0.0023 (9) |
| C21 | 0.0220 (11) | 0.0163 (11) | 0.0204 (13) | −0.0019 (10) | 0.0011 (9) | −0.0017 (10) |
| C61 | 0.0138 (9) | 0.0138 (11) | 0.0150 (11) | 0.0020 (8) | 0.0008 (8) | 0.0002 (8) |
| C62 | 0.0144 (9) | 0.0134 (11) | 0.0193 (12) | 0.0009 (8) | 0.0009 (8) | −0.0001 (8) |
| C63 | 0.0168 (10) | 0.0145 (11) | 0.0215 (12) | 0.0003 (9) | −0.0018 (9) | −0.0048 (9) |
| C64 | 0.0189 (9) | 0.0211 (11) | 0.0144 (10) | 0.0038 (12) | −0.0006 (8) | −0.0022 (11) |
| C65 | 0.0188 (10) | 0.0142 (11) | 0.0191 (11) | 0.0017 (9) | 0.0015 (9) | 0.0016 (9) |
| C66 | 0.0168 (10) | 0.0117 (10) | 0.0166 (11) | 0.0012 (8) | 0.0006 (8) | −0.0012 (8) |
| C67 | 0.0148 (10) | 0.0142 (10) | 0.0160 (11) | 0.0029 (8) | 0.0011 (9) | 0.0030 (9) |
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Geometric parameters (Å, º)
| S1—C9 | 1.737 (2) | C6—C67 | 1.490 (3) |
| S1—C2 | 1.754 (2) | C7—H7 | 0.9500 |
| O62—C62 | 1.352 (3) | C21—H21A | 0.9800 |
| O62—H3 | 0.8400 | C21—H21B | 0.9800 |
| O5—C5 | 1.222 (3) | C21—H21C | 0.9800 |
| O67—C67 | 1.251 (3) | C61—C66 | 1.415 (3) |
| N4—C9 | 1.357 (3) | C61—C62 | 1.419 (3) |
| N4—C3 | 1.404 (3) | C61—C67 | 1.460 (3) |
| N4—C5 | 1.434 (3) | C62—C63 | 1.391 (3) |
| N8—C9 | 1.313 (3) | C63—C64 | 1.379 (3) |
| N8—C7 | 1.358 (3) | C63—H63 | 0.9500 |
| C2—C3 | 1.339 (3) | C64—C65 | 1.396 (3) |
| C2—C21 | 1.487 (3) | C64—H64 | 0.9500 |
| C3—H3A | 0.9500 | C65—C66 | 1.377 (3) |
| C5—C6 | 1.439 (3) | C65—H65 | 0.9500 |
| C6—C7 | 1.375 (3) | C66—H66 | 0.9500 |
| C9—S1—C2 | 91.17 (12) | H21A—C21—H21B | 109.5 |
| C62—O62—H3 | 109.5 | C2—C21—H21C | 109.5 |
| C9—N4—C3 | 114.16 (19) | H21A—C21—H21C | 109.5 |
| C9—N4—C5 | 122.48 (18) | H21B—C21—H21C | 109.5 |
| C3—N4—C5 | 123.4 (2) | C66—C61—C62 | 118.2 (2) |
| C9—N8—C7 | 113.5 (2) | C66—C61—C67 | 122.2 (2) |
| C3—C2—C21 | 128.2 (2) | C62—C61—C67 | 119.57 (19) |
| C3—C2—S1 | 110.87 (17) | O62—C62—C63 | 118.0 (2) |
| C21—C2—S1 | 120.92 (18) | O62—C62—C61 | 121.9 (2) |
| C2—C3—N4 | 113.5 (2) | C63—C62—C61 | 120.10 (19) |
| C2—C3—H3A | 123.3 | C64—C63—C62 | 119.9 (2) |
| N4—C3—H3A | 123.3 | C64—C63—H63 | 120.0 |
| O5—C5—N4 | 118.9 (2) | C62—C63—H63 | 120.0 |
| O5—C5—C6 | 129.7 (2) | C63—C64—C65 | 121.3 (2) |
| N4—C5—C6 | 111.41 (19) | C63—C64—H64 | 119.4 |
| C7—C6—C5 | 119.8 (2) | C65—C64—H64 | 119.4 |
| C7—C6—C67 | 117.0 (2) | C66—C65—C64 | 119.3 (2) |
| C5—C6—C67 | 122.88 (19) | C66—C65—H65 | 120.3 |
| N8—C7—C6 | 126.4 (2) | C64—C65—H65 | 120.3 |
| N8—C7—H7 | 116.8 | C65—C66—C61 | 121.1 (2) |
| C6—C7—H7 | 116.8 | C65—C66—H66 | 119.5 |
| N8—C9—N4 | 125.9 (2) | C61—C66—H66 | 119.5 |
| N8—C9—S1 | 123.84 (17) | O67—C67—C61 | 121.3 (2) |
| N4—C9—S1 | 110.26 (16) | O67—C67—C6 | 116.06 (19) |
| C2—C21—H21A | 109.5 | C61—C67—C6 | 122.63 (18) |
| C2—C21—H21B | 109.5 | ||
| C9—S1—C2—C3 | −1.90 (17) | C5—N4—C9—S1 | 176.89 (15) |
| C9—S1—C2—C21 | 177.56 (18) | C2—S1—C9—N8 | −177.19 (19) |
| C21—C2—C3—N4 | −178.26 (19) | C2—S1—C9—N4 | 2.17 (15) |
| S1—C2—C3—N4 | 1.1 (2) | C66—C61—C62—O62 | −176.97 (19) |
| C9—N4—C3—C2 | 0.5 (3) | C67—C61—C62—O62 | 1.8 (3) |
| C5—N4—C3—C2 | −178.30 (19) | C66—C61—C62—C63 | 3.7 (3) |
| C9—N4—C5—O5 | −170.18 (19) | C67—C61—C62—C63 | −177.5 (2) |
| C3—N4—C5—O5 | 8.6 (3) | O62—C62—C63—C64 | 178.71 (19) |
| C9—N4—C5—C6 | 7.7 (3) | C61—C62—C63—C64 | −1.9 (3) |
| C3—N4—C5—C6 | −173.54 (18) | C62—C63—C64—C65 | −0.6 (3) |
| O5—C5—C6—C7 | 170.2 (2) | C63—C64—C65—C66 | 1.2 (3) |
| N4—C5—C6—C7 | −7.4 (3) | C64—C65—C66—C61 | 0.7 (3) |
| O5—C5—C6—C67 | −3.2 (4) | C62—C61—C66—C65 | −3.1 (3) |
| N4—C5—C6—C67 | 179.16 (18) | C67—C61—C66—C65 | 178.16 (19) |
| C9—N8—C7—C6 | 1.3 (3) | C66—C61—C67—O67 | 172.6 (2) |
| C5—C6—C7—N8 | 3.4 (3) | C62—C61—C67—O67 | −6.1 (3) |
| C67—C6—C7—N8 | 177.25 (19) | C66—C61—C67—C6 | −4.5 (3) |
| C7—N8—C9—N4 | −1.1 (3) | C62—C61—C67—C6 | 176.78 (18) |
| C7—N8—C9—S1 | 178.13 (16) | C7—C6—C67—O67 | −40.7 (3) |
| C3—N4—C9—N8 | 177.37 (19) | C5—C6—C67—O67 | 133.0 (2) |
| C5—N4—C9—N8 | −3.8 (3) | C7—C6—C67—C61 | 136.6 (2) |
| C3—N4—C9—S1 | −2.0 (2) | C5—C6—C67—C61 | −49.8 (3) |
(2) 6-(2-Hydroxybenzoyl)-2-methyl-5H-thiazolo[3,2-a]pyrimidin-5-one . Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| O62—H3···O67 | 0.84 | 1.81 | 2.557 (2) | 146 |
| C64—H64···O5i | 0.95 | 2.57 | 3.217 (3) | 125 |
Symmetry code: (i) −x+2, y+1/2, −z+1.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) general, 1, 2. DOI: 10.1107/S2056989015011044/hb7437sup1.cif
Structure factors: contains datablock(s) 1. DOI: 10.1107/S2056989015011044/hb74371sup2.hkl
Structure factors: contains datablock(s) 2. DOI: 10.1107/S2056989015011044/hb74372sup3.hkl
Supporting information file. DOI: 10.1107/S2056989015011044/hb74371sup4.cml
Supporting information file. DOI: 10.1107/S2056989015011044/hb74372sup5.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report





