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. 2015 Jul 31;3:34. doi: 10.1186/s40168-015-0098-1

Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity

Yan He 1, J Gregory Caporaso 2,3, Xiao-Tao Jiang 1, Hua-Fang Sheng 1, Susan M Huse 4, Jai Ram Rideout 3, Robert C Edgar 5, Evguenia Kopylova 6, William A Walters 7, Rob Knight 6,8, Hong-Wei Zhou 1,
PMCID: PMC4520016  PMID: 26229598

Correction

After publication of this work [1], we noted that one of the references in the introduction was not described properly. With respect to the original authors, we clarify that this sentence in introduction: “Due to the lack of a gold standard of ‘correct’ OTUs, several measurements have been used to evaluate the performance of clustering methods, for example, rationality of OTU structure [2, 3], computational efficiency (that is, runtime and memory requirements) [4], and the ability to cope with OTU inflation [5]” should be stated as “Due to the lack of a gold standard of ‘correct’ OTUs, several measurements have been used to evaluate the performance of clustering methods, for example, rationality of OTU structure [2], use of the Matthew’s Correlation Coefficient [3], computational efficiency (that is, runtime and memory requirements) [4], and the ability to cope with OTU inflation [5]”.

Footnotes

The online version of the original article can be found under doi:10.1186/s40168-015-0081-x.

Competing interests

The authors declare that they have no competing interests.

Authors’ contributions

YH, XTJ, SMH, RK, and HWZ conceived the method; JGC, JRR, RCE, and WAW implemented the software; YH, XTJ, JGC, HFS, SMH, and HWZ performed the experiments and analyzed the data; YH, SMH, JGC, JK, EK, RK, and HWZ wrote the manuscript. All authors read and approved the final manuscript.

References

  • 1.He Y, Caporaso JG, Jiang XT, Sheng HF, Huse SM, Rideout JR, et al. Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity. Microbiome. 2015;3:20. doi: 10.1186/s40168-015-0081-x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Jiang X-T, Zhang H, Sheng H-F, Wang Y, He Y, Zou F, et al. Two-Stage Clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons. PLoS ONE. 2012;7. [DOI] [PMC free article] [PubMed]
  • 3.Schloss PD, Westcott SL. Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. 2011;77:3219–26. doi: 10.1128/AEM.02810-10. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460–1. doi: 10.1093/bioinformatics/btq461. [DOI] [PubMed] [Google Scholar]
  • 5.Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods. 2013;10:996–8. doi: 10.1038/nmeth.2604. [DOI] [PubMed] [Google Scholar]

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