Diagnostic value of cyclin-dependent kinase/cyclin-dependent kinase inhibitor expression ratios as biomarkers of locoregional and hematogenous dissemination risks in oral squamous cell carcinoma

Abstract

The aim of the present study was to investigate the diagnostic value of cell cycle-related genes in oral squamous cell carcinoma (OSCC) by examining the expression of the following genes in 77 OSCC tissues by quantitative polymerase chain reaction: Cyclin genes (CCNA1, CCND1, CCND2 and CCNE1), cyclin-dependent kinase (CDK) genes (CDK1, CDK2 and CDK4), CDK inhibitor genes (CDKN2A, CDKN1A, CDKN1B and CDKN1C), and integrin and associated genes that we previously reported (ITGA3, ITGB4, CD9 and JUP). The expression ratios of 66 combinations of the 11 cell cycle-related genes were analyzed to examine their associations with major clinical events using Mann-Whitney U and log-rank tests. Three expression ratios (CDK1/CDKN1B, CDK2/CDKN1A and CCNE1/CDK2) showed associations on univariate analyses and their diagnostic value was re-analyzed with integrin gene expression biomarkers (ITGA3/CD9 and ITGB4/JUP) using the Cox proportional hazards model and Kaplan-Meier estimates. Lymph node metastasis occurred in >90% of double-positive cases (high-ITGA3/CD9 and high-CDK1/CDKN1B) irrespective of tumor size (P<0.0001). Primary site recurrence was found in >30% of double-positive cases (high-ITGA3/CD9 and high-CDK2/CDKN1A) with tumors >20 mm (P=0.003). Triple-positive (high-ITGB4/JUP, high-ITGA3/CD9 and high-CDK2/CDKN1A) was associated with distant metastasis (P<0.0001), but not with other clinical parameters. Disease-specific death occurred in 55% of double-positive cases (high-ITGA3/CD9 and high-CDK2/CDKN1A) (P<0.0001) and a positive surgical margin was a significant factor for fatality in these cases. Reliable prediction of locoregional and hematogenous dissemination risks in OSCC using the four CDK and integrin gene expression ratios is a promising biomarker system. Clinical use of these parameters may improve the control rate with the use of new therapeutic strategies.

Introduction

Over 90% of lip and oral cavity cancers are squamous cell carcinomas, with 300,000 new cases annually worldwide. Based on the classification of the cancer cell type, it is associated with squamous cell carcinoma of the head and neck, esophagus, lung, cervix, uterus, skin and mucosa at other sites; almost 2 million new cases of these types of cancer are reported each year (1). Locoregional treatment is frequently used for squamous cell carcinoma and the standard treatment currently consists of surgery plus adjuvant chemoradiation. Despite the recent introduction of molecular-targeted therapy, treatment options depend on the disease stage (2). Direct cause of fatality from oral squamous cell carcinoma (OSCC) is uncontrollable locoregional recurrence at the surgically treated site (such as resection of primary cancer and neck dissection) or distant metastasis. Locoregional and hematogenous dissemination in the early stage of cancer also remains difficult to control with standard treatment (3). To improve the control rate, local plus systemic treatment strategies against micro-metastasis are required from the outset of treatment.

Our previous studies conducted comprehensive integrin gene expression analysis to identify prognostic biomarkers that predict the clinical behavior of OSCC and identified that the two gene expression ratios, ITGA3/CD9 and ITGB4/JUP, reflect malignant behavior associated with lymph node metastasis (LNM) and distant metastasis, respectively (3–5). In the present study, the diagnostic value of cyclins, cyclin-dependent kinases (CDKs) and CDK inhibitors (CDKIs) gene expression was investigated since these molecules play central roles in cell cycle control, have been extensively studied, mediate carcinogenesis and can be used as prognostic factors of cancer (6,7). These genes became of particular interest recently as possible molecular targets of cancer therapy (8). Therefore, the association of the expression of 11 cyclin-related genes in OSCC tissues with clinical events were investigated to examine their value as biomarkers.

Materials and methods

Patients and specimens

Tumor samples were collected at biopsy from 77 patients with OSCC (49 men, 28 women; mean age, 66 years; range, 22–86 years) who underwent surgical treatment between 1999 and 2012 at the Dental Department of Niigata University Medical and Dental Hospital (Niigata, Japan); the Special Dental Care and Oral Surgery Department of Shinshu University Hospital (Nagano, Japan); and the Division of Oral Surgery of Nagaoka Red Cross Hospital (Nagaoka, Japan) (Table I). The treatment modalities included local resection, composite resection (resection of primary oral cancer, a portion of the oral floor and mandible, and reconstruction with tissue transplantation and neck dissection) and composite resection with radiation therapy with or without intravenous adjuvant chemotherapy.

Table I.

Demographic and clinicopathological characteristics of 77 patients with oral squamous cell carcinoma.

Clinicopathological factors	Values
Total, n	77
Observation period, days [range (mean)]	144–2,762 (1,510)
Age, years [range (mean)]	22–86 (66)
Gender, n (%)
Male	49 (63.6)
Female	28 (36.4)
Site, n (%)
Tongue	38 (49.4)
Gingiva	27 (35.1)
Oral floor	9 (11.7)
Buccal mucosa	3 (3.9)
Tumor sizea, mm [range (mean)]	8–52 (27.1)
≤20 mm, n (%)	25 (32.5)
21–30 mm, n (%)	26 (33.8)
31–40 mm, n (%)	18 (23.4)
>40 mm, n (%)	8 (10.4)
Tumor statusb, n (%)
T1	24 (31.2)
T2	35 (45.5)
T3	3 (3.9)
T4	15 (19.5)
Lymph node metastasisc, n (%)
N0	37 (48.1)
N1	10 (13.0)
N2	30 (39.0)
N3	0 (0.0)
Histological grade (YK4)d, n (%)
2–3	31 (40.3)
4c-d	46 (59.7)
Margin statuse, n (%)
Negative	72 (93.5)
Positive	5 (6.5)
Primary site recurrence, n (%)
Negative	71 (92.2)
Positive	6 (7.8)
Distant metastasis, n (%)
Negative	72 (93.5)
Positive	5 (6.5)
Disease-specific deathf, n (%)
Alive	63 (81.8)
Succumbed	14 (18.2)

^aMajor width of the tumor.

^bTumor (T)

^clymph node (N) category according to the Union for International Cancer Control Tumor-Node-Metastasis classification of malignant tumors of the lip and oral cavity.

^dHistopathological classification of oral squamous cell carcinoma (YK grade) according to Yamamoto et al (9).

^eHistological tumor positiveness of the surgical margin.

^fFatality outcome from uncontrollable oral squamous cell carcinoma.

The study was performed in accordance with the guidelines of the Declaration of Helsinki and the protocol was approved by the Research Ethics Committee of Niigata University Medical and Dental Hospital, the Research Ethics Committee of Shinshu University Hospital and the Ethics Committee of Nagaoka Red Cross Hospital. Patients provided written informed consent to participate in the study.

Total RNA extraction from carcinoma tissue

Cancer tissue specimens were preserved by immersion in RNAlater solution (Invitrogen Life Technologies, Tokyo, Japan). Extraction of total RNA was performed using the RNeasy Lipid Tissue Mini kit (Qiagen, Tokyo, Japan) following homogenization by TissueLyser LT (Qiagen) in QIAzol Lysis reagent according to the manufacturer's instructions. Synthesis of first-strand cDNA was performed by reverse transcription using total RNA (0.2–1 µg) as a template (SuperScript III®; Invitrogen Life Technologies).

Gene expression analysis by reverse transcription-quantitative polymerase chain reaction (RT-qPCR)

RT-qPCR was performed on a Thermal Cycler Dice® Real Time System II (Takara Bio Inc., Shiga, Japan) using cDNA synthesized from the patients' cancer specimens and TaqMan probes for cyclins, CDKs, CDKIs, integrins and integrin-related genes (TaqMan Gene Expression Assays; Invitrogen Life Technologies) according to the following protocol: 600 sec at 95°C, followed by extension for 15 sec at 95°C and 60 sec at 60°C. Relative standard curves representing several 10-fold cDNA dilutions (1:10:100:1,000:10,000:100,000) from an OSCC tissue sample were used for the linear regression analysis of other samples. The manufacturer's TaqMan probe assay IDs are as follows: CCNA1: Hs00171105_m1; CCND1: Hs00277039_m1; CCND2: Hs00153380_m1; CCNE1: Hs00233356_m1; CDK1: Hs00938777_m1; CDK2: Hs00608082_m1; CDK4: Hs00364847_m1; CDKN2A: Hs00923894_m1; CDKN1A: Hs00355782_m1; CDKN1B: Hs01597588_m1; CDKN1C: Hs00175938_m1; ITGA3: Hs00233722_m1; ITGB4: Hs01103172_g1; CD9: Hs01124027_m1; JUP: Hs00158408_m1; and GAPDH: Hs02758991_g1.

Statistical analysis

Expression ratios of all the possible combinations of the 12 genes (11 cyclin-related genes and GAPDH; 66 combinations in total) and expression ratios of two combinations of the integrin genes (ITGA3/CD9 and ITGB4/JUP) were calculated for each of the 77 OSCC cases. Each gene expression ratio was categorized by the cut-off point estimated from the receiver operating characteristic curve for each clinical event. The response variables used were LNM determined by histopathological examination of the surgical specimen, primary site recurrence (PSR) following surgery, distant metastasis following successful surgery for the primary cancer and disease-specific death (DSD) from uncontrollable OSCC. The clinicopathological parameters were age, gender, tumor size, tumor category (Union for International Cancer Control Tumor-Node-Metastasis Classification), histopathological mode of invasion (9) and positive surgical margins on histological examination. Distant metastasis following locoregional failure was regarded as locoregional recurrence.

The influence of the gene expression ratios and clinicopathological parameters on LNM, PSR, distant metastasis and DSD was examined by univariate analyses (Mann-Whitney U test followed by log-rank test) to optimize the combination of variables for subsequent multivariate analysis. Analyses using a Cox proportional hazards model and Kaplan-Meier (K–M) curves were performed for the events of LNM, PSR, distant metastasis and DSD (or disease-specific survival in K–M curves) using SPSS 21.0 (IBM Japan Ltd., Tokyo, Japan). Time to each event was calculated from the date of first visit to the date of neck dissection, diagnosis of recurrence and date of DSD or final observation for surviving patients. P<0.05 was considered to indicate a statistically significant difference.

Results

Univariate analysis

The gene expression ratios and clinicopathological parameters that showed significance for each clinical event on the Mann-Whitney U test were further tested by the log-rank test. This revealed that the four clinical events were influenced by three CDK-related gene expression ratios, as well as the two integrin gene expression ratios, tumor size, surgical margin status and invasive histology (Table II). For multivariate analysis, these gene expression ratios were used in double or triple combinations to group ‘double-positive’ or ‘triple-positive’ cases.

Table II.

Final log-rank test results for the risks of lymph node metastasis, primary site recurrence, distant metastasis and disease-specific death in oral squamous cell carcinoma.

Log-rank (Mantel-Cox)	Lymph node metastasis	Primary site recurrence	Distant metastasis	Disease-specific deathd
Gene expression ratios
CDK2/CDKN1A	–	0.019	0.017	0.002
CDK1/CDKN1B	0.008	0.047	–	0.041
CCNE1/CDK2	0.002	–	0.012	0.005
Integrin gene expression ratios
ITGB4/JUP	–	–	0.008	–
ITGA3/CD9	0.005	–	–	0.011
Clinicopathological parameters
Size, >20 mma	0.047	0.057	–	–
Positive marginb	0.002	<0.001	–	0.001
Invasive histologyc	0.005	0.032	0.051	0.001

^aMajor width of the tumor was categorized into >20 and ≤20 mm.

^bHistological tumor positiveness of the surgical margin.

^cHistopathological classification of oral squamous cell carcinoma [Yamamoto et al (9)].

^dFatality from uncontrollable oral squamous cell carcinoma. Data are P-values. Continuous variables of gene expression ratios are categorized according to the cut-off points introduced by receiver operating characteristic curves of distant metastasis for CDK2/CDKN1A, CDK4/CDKN2A and ITGB4/JUP, of lymph node metastasis for CDK1/CDKN1B, CCNE1/CDK2 and ITGA3/CD9. CDK, cyclin-dependent kinase; CCN, cyclin.

LNM

In the Cox proportional hazards model of LNM (Table IIIA), the single parameters (high-ITGA3/CD9 and high-CDK1/CDKN1B) were independent significant variables in addition to tumor size (size, >20 mm). The rate of LNM was represented by the K–M curve (one minus cumulative survival) between groups of double-positive cases (high-ITGA3/CD9 and high-CDK1/CDKN1B) and the remaining (negative) cases according to size (≤20 or >20 mm) (Fig. 1A). The double-positive cases (high-ITGA3/CD9 and high-CDK1/CDKN1B) consistently exhibited a high rate of LNM (>85%) irrespective of tumor size, but the negative cases revealed an increasing rate of LNM with larger tumor size (>20 mm).

Table III.

Cox proportional hazard models for the risks of lymph node metastasis, primary site recurrence, distant metastasis and fatality in oral squamous cell carcinoma.

A, Lymph node metastasis
						95% CI for OR
Variable	B	SE	Wald	P-value	OR	Lower limit	Upper limit
High-ITGA3/CD9	1.057	0.341	9.627	0.002	2.878	1.476	5.613
High-CDK1/CDKN1B	0.853	0.332	6.609	0.010	2.346	1.225	4.494
Size >20 mma	0.623	0.367	2.875	0.090	1.864	0.908	3.829
B, Primary site recurrence
						95% CI for OR
Variable	B	SE	Wald	P-value	OR	Lower limit	Upper limit
High-ITGA3/CD9 and High-CDK2/CDKN1A	2.352	0.883	7.089	0.008	10.505	1.860	59.328
Positive marginb	2.291	0.903	6.444	0.011	9.886	1.686	57.980
C, Distant metastasis
						95% CI for OR
Variable	B	SE	Wald	P-value	OR	Lower limit	Upper limit
High-ITGB4/JUP, High-ITGA3/CD9 and High-CDK2/CDKN1A	3.350	1.119	8.960	0.003	28.496	3.179	255.464
D, Disease-specific deathc
						95% CI for OR
Variable	B	SE	Wald	P-value	OR	Lower limit	Upper limit
High-ITGA3/CD9 and High-CDK2/CDKN1A	2.330	0.569	16.750	<0.001	10.274	3.367	31.350
Positive margin	1.919	0.686	7.835	0.005	6.817	1.778	26.139

^aMajor width of the tumor was categorized into >20 and ≤20 mm.

^bHistological tumor positiveness of the surgical margin.

^cFatality from uncontrollable oral squamous cell carcinoma. Cox Proportional Hazard Models for the risks of (A) lymph node metastasis, (B) primary site recurrence, (C) distant metastasis and (D) fatality outcome from oral squamous cell carcinoma. Continuous variables of gene expression ratios are categorized according to the cut-off points introduced by receiver operating characteristic curves of lymph node metastasis for ITGA3/CD9, of distant metastasis for CDK2/CDKN1A and ITGB4/JUP. B, regression coefficient; SE, standard error; OR, odds ratio; CI, confidence interval; CDK, cyclin-dependent kinase.

Figure 1.

Kaplan-Meier curves for 77 patients with oral squamous cell carcinoma. (A) Lymph node metastasis, (B) primary site recurrence, (C) distant metastasis and (D) disease-specific survival. (A–C) One minus cumulative survival and (D) cumulative survival. Each outcome (A, B and D) was stratified by size (≤20 or >20 mm).

PSR

The Cox proportional hazards model identified double-positive (high-ITGA3/CD9 and high-CDK2/CDKN1A) and positive margin to be independent significant variables for PSR (Table IIIB). Although positive margin is a clinical event following surgery, it was included in the analysis due to its considerable influence on the risk for PSR. The rate of PSR was represented by the K–M curves (one minus cumulative survival) between groups of double-positive cases (high-ITGA3/CD9 and high-CDK2/CDKN1A) and the remaining negative cases according to size, ≤20 or >20 mm (Fig. 1B). The double-positive group (high-ITGA3/CD9 and high-CDK2/CDKN1A) >20 mm in size clearly showed a higher rate of PSR independent of the primary therapeutic intervention (positive margin), indicating diagnostic value of the high-ITGA3/CD9 and high-CDK2/CDKN1A as a biomarker at the outset of treatment planning.

Distant metastasis

The Cox proportional hazards model identified that triple-positive (high-ITGB4/JUP, high-ITGA3/CD9 and high-CDK2/CDKN1A) was the only significant variable for distant metastasis (Table IIIC). Tumor size, histopathological parameters and LNM did not exhibit a significant influence in multivariate analysis in the presence of the triple-positive (high-ITGB4/JUP, high-ITGA3/CD9 and high-CDK2/CDKN1A) influence. The rate of distant metastasis was presented by the K–M curves (one minus cumulative survival) between the groups of triple-positive cases (high-ITGB4/JUP, high-ITGA3/CD9 and high-CDK2/CDKN1A) and the remaining negative cases (Fig. 1C). Among all 77 cases, 4 of 5 cases that developed distant metastasis were extracted from 11 cases based on their triple-positive status (high-ITGB4/JUP, high-ITGA3/CD9 and high-CDK2/CDKN1A). A false-negative case had a tumor size of 38 mm, suggesting the higher diagnostic reliability of the triple-positive status (high-ITGB4/JUP, high-ITGA3/CD9 and high-CDK2/CDKN1A) in the early detection of distant metastasis.

DSD

The Cox proportional hazards model found double-positive (high-ITGA3/CD9 and high-CDK2/CDKN1A) and positive margin to be independent significant variables (Table IIID). The cumulative survival was represented by the K–M curves between the groups of double-positive cases (high-ITGA3/CD9 and high-CDK2/CDKN1A) and the remaining negative cases according to size (≤20 or >20 mm) (Fig. 1D). The risk of DSD was significantly higher in double-positive cases (high-ITGA3/CD9 and high-CDK2/CDKN1A) with a small influence from tumor size. Positive margin was associated with fatality in double-positive cases (high-ITGA3/CD9 and high-CDK2/CDKN1A) (data not shown).

Discussion

In our previous study, we demonstrated that there are two OSCC metastatic traits: Simple LNM and uncontrollable locoregional spread and distant metastasis via the circulation, leading to fatality. We proposed that a biomarker system using integrin gene expression ratios of high-ITGA3/CD9 for locoregional spread and high-ITGB4/JUP for hematogenous dissemination is effective for distinguishing these two types of risks (3). With the aim of improving diagnostic reliability, RT-qPCR was performed to determine the expression levels of 11 genes of cyclin-related proteins (cyclins, CDKs and CDKIs) for calculating the gene expression ratios of 66 gene combinations and assessed their diagnostic value in combination with the previously reported integrin gene expression biomarkers. Four gene expression ratios (ITGA3/CD9, ITGB4/JUP, CDK1/CDKN1B and CDK2/CDKN1A) are predictive of major clinical events with a high degree of reliability in OSCC patients.

Two gene expression ratio patterns, high-ITGA3/CD9 and high-CDK1/CDKN1B, reflected the LNM risk with a high degree of reliability. While LNM occurred in ~50% of OSCC cases, it may not respond to therapy in certain cases. Therefore, predicting the risk of LNM with biomarkers would be helpful in selecting optimal treatment. The finding that <90% of patients with high-ITGA3/CD9 and high-CDK1/CDKN1B eventually had LNM irrespective of the primary tumor size (Fig. 1A) suggests that LNM can be detected before it becomes clinically evident.

As PSR is strongly influenced by clinical factors (such as site of the lesion and the extent of involvement within the oral cavity) and factors associated with treatment (such as positive margin), it is hard to conduct an accurate risk assessment prior to starting therapy. In the present study, the analysis using the Cox proportional hazard model showed that concurrent high-ITGA3/CD9 and high-CDK2/CDKN1A and positive surgical margins are significant predictors of PSR (Table IIIB). This suggests that biological propensities are important underlying risk factors for PSR. By contrast, clear surgical margins reflect the relative success of surgery and therefore strongly affect PSR, but it cannot serve as a preoperative parameter for PSR risk assessment. As demonstrated by the K–M curve for PSR, the combination of high-ITGA3/CD9 and high-CDK2/CDKN1A without consideration of another clinical factor estimates the risk of PSR well (Fig. 1B), and the ratios will therefore provide surgeons with useful information for determining the extent of surgical resection.

Distant metastasis was identified in ~6.5% of patients (Table I), which is lower than the rate (~10%) observed in clinical settings. The low distant metastasis rate may be due to our definition of distant metastasis, in which distant metastasis following PSR was classified as PSR. Achieving a highly reliable estimate of the risk of distant metastasis based on tumor progression and histological findings is difficult and numerous patients may be receiving unnecessary postoperative chemotherapy due to this. The analysis using the Cox proportional hazard model showed that none of the clinicopathological parameters were significant risk factors for distant metastasis, while the combination of high-ITGB4/JUP, high-ITGA3/CD9 and high-CDK2/CDKN1A was the only significant risk factor for distant metastasis. This suggests that there is a biological propensity for distant metastasis and it is difficult to predict distant metastasis based on clinical parameters and histological findings. Reliable analysis of distant metastasis risks will enable appropriate selection of chemotherapy, molecular-targeted therapy and/or immunotherapy for patients with highly malignant cancer in the early stage when maximum therapeutic effect is expected. In addition, it may eliminate unnecessary adjuvant chemoradiation in the majority of patients.

The combination of positve margins, high-ITGA3/CD9 and high-CDK2/CDKN1A were shown to contribute to the risk of DSD. The influence of tumor size on prognosis was relatively small. By contrast, as demonstrated by analyses using the Cox proportional hazard model and the K–M curve (Table IIID and Fig. 1D), a malignant propensity indicated by the status of high-ITGA3/CD9 and high-CDK2/CDKN1A plus successful surgical resection directly affected the prognosis.

The present study demonstrated that CDK gene expression ratios, CDK1/CDKN1B and CDK2/CDKN1A, may be used as parameters for assessing the risk of LNM, PSR, distant metastasis and DSD reliably, particularly in combination with integrin-related gene expression ratios, ITGA3/CD9 and ITGB4/JUP, whose value has been confirmed previously (3). The cell cycle is regulated by a mechanism involving the coordinated actions of CDK, cyclin and CDKI (8,10). Dysregulated function of these molecules is the most frequently observed anomaly in malignant tumors (7,8,11). CDK1 is the key factor in the G₂/M phase transition and can be considered as a cell proliferation index. Upregulation of CDK1 is observed in OSCC and its overexpression is associated with malignant behavior. CDK1 is therefore expected to be an indicator of poor prognosis (6,12). CDK2 plays various roles in DNA synthesis, modulation of G₂ progression and in G₁/S transition (13). CDK2 overexpression was shown to be associated with malignant biological behavior and a poor prognosis in patients with head and neck carcinoma (14). CDKN1B (p27) and CDKN1A (p21) are CDKIs belonging to the Cip/Kip family that inhibit kinase activity of the cyclin E/A-CDK2 complex, thereby blocking the G₁/S transition and inducing apoptosis (15,16). Downregulation and increased degradation of these CDKIs were observed in cancerous tissues and their association with malignant behavior of squamous cell carcinoma was also demonstrated (17–19). Specific associations of CDK-CDKI gene expression ratios with major clinical events (LNM, PSR, distant metastasis and DSD) suggest that cell cycle regulation mechanisms involving these molecules have effects on invasion, dissemination and tumor growth.

The present study demonstrated the feasibility of using four combinations of CDK and integrin gene expression status as a simple and relatively inexpensive assessment of the risk of locoregional spread or hematogenous dissemination. Highly reliable risk assessment prior to treatment enables selection of optimal therapy and use of novel therapeutic strategies, thereby improving control rates. Further studies using a large group of subjects and prospective clinical studies, as well as improved understanding of biological mechanisms, are essential for showing the clinical value of the biomarker system and application in the clinical setting.

Glossary

Abbreviations

OSCC

oral squamous cell carcinoma

LNM

lymph node metastasis

PSR

primary site recurrence

DSD

disease-specific death

K–M curve

Kaplan-Meier curve

CDK

cyclin-dependent kinase

CDKI

cyclin-dependent kinase inhibitor

RT-qPCR

reverse transcription-quantitative polymerase chain reaction