SUMMARY
Some organisms, such as adult zebrafish and newborn mice, have the capacity to regenerate heart tissue following injury. Unraveling the mechanisms of heart regeneration is fundamental to understanding why regeneration fails in adult humans. Numerous studies have revealed that nerves are crucial for organ regeneration, thus we aimed to determine whether nerves guide heart regeneration. Here, we show using transgenic zebrafish that inhibition of cardiac innervation leads to reduction of myocyte proliferation following injury. Specifically, pharmacological inhibition of cholinergic nerve function reduces cardiomyocyte proliferation in the injured hearts of both zebrafish and neonatal mice. Direct mechanical denervation impairs heart regeneration in neonatal mice, which was rescued by the administration of Neuregulin 1 (Nrg1) and Nerve growth factor (Ngf) recombinant proteins. Transcriptional analysis of mechanically denervated hearts revealed a blunted inflammatory and immune response following injury. These findings demonstrate that nerve function is required for both zebrafish and mouse heart regeneration.
Graphical abstract
INTRODUCTION
A significant cause of heart failure is the inability of the adult mammalian heart to replace lost cells following injury (Laflamme and Murry, 2011). In contrast to adult mammals, lower organisms are capable of regenerating many of their injured organs. For example, zebrafish can regenerate up to 20% of their hearts after surgical amputation primarily through the dedifferentiation and division of pre-existing cardiomyocytes (Jopling et al., 2010; Kikuchi et al., 2010; Poss et al., 2002). Similarly, newts have a remarkable capacity for regenerating a variety of structures, ranging from the heart and ocular lens to a completely functional limb (Laube et al., 2006; Oberpriller and Oberpriller, 1974; Tsonis et al., 2004).
Recent evidence indicates that mice can regenerate their hearts immediately after birth, though this capacity is lost within the first week of life (Porrello et al., 2011b; Porrello et al., 2013). These data suggest that the mammalian myocardium retains regenerative potential similar to lower organisms, and understanding the regulatory processes that guide this phenomenon could reveal novel approaches to reactivate this dormant regenerative capacity in adults.
For over a century, it has been reported that nerves play a crucial role in guiding regenerative processes in multiple species. Seminal work in salamander limb regeneration has revealed the reliance on nerves in regeneration (Todd, 1823); if the nerve is severed at the base of the limb prior to or shortly after amputation, the limb will fail to regenerate (Singer, 1952). Studies on the regeneration of a variety of structures in the newt and other organisms have revealed that cholinergic neurons often play a crucial role in the reformation of the severed limb (Drachman, 1964; Singer et al., 1960). More importantly, nerves guide the regeneration of multiple organs in diverse species, suggesting some evolutionarily conserved nerve functions in regeneration (Kumar and Brockes, 2012).
Although cholinergic nerves are critical for multiple regenerative processes, their role in heart regeneration has never been studied. Thus, to determine whether nerve activity is essential for heart regeneration, we used the zebrafish and neonatal mouse models of heart regeneration to address this question. Here, we show that reduction of heart innervation in a transgenic zebrafish model diminishes cardiomyocyte cell cycle activity and inhibits heart regeneration following injury. Specifically, disruption of cholinergic signaling by pharmacological approaches leads to a reduction in the cardiomyocyte cell cycle activity of both zebrafish and neonatal mice following injury. We also demonstrate that mechanical ablation of the vagus nerve in the neonatal mouse has a similar effect in inhibiting heart regeneration following apical resection and myocardial infarction. Treatment of mechanically denervated mice with nerve-factors rescued the reduced regenerative capacity following denervation. Finally, transcriptional profiling of the neonatal mouse heart following mechanical denervation revealed patterns for disruption of inflammatory gene expression, which were normally activated during heart regeneration. These factors might contribute to the nerve-dependent regenerative capacity of the heart. These findings reveal that nerve function plays a key role in cardiac regeneration through regulation of cardiomyocyte proliferation.
RESULTS
Innervation Modulates Injury-Induced Cardiomyocyte Proliferation in Zebrafish
The vertebrate heart is innervated during chamber morphogenesis by parasympathetic and sympathetic fibers, which regulate responses of the cardiovascular system to stress. Recent studies indicate that, upon origination from the stellate ganglion, sympathetic nerves are guided along the cardiac surface by neurotrophic signals from developing coronary vascular cells (Nam et al., 2013). We observed extensive innervation of the atrial surface myocardium in adult zebrafish, with less pronounced innervation of the ventricle (Figure 1C, upper panel). After resection of the ventricular apex, new muscle became innervated during regeneration of the new apical wall (Figures 1A and 1B).
To examine the potential involvement of nerves in the regenerative process, we designed transgenic tools to limit the extent of cardiac innervation. We created a transgenic zebrafish line with myocardial overexpression of semaphorin3aa, a known inhibitor of cardiac innervation (Ieda et al., 2007) (Tg(cmlc2:sema3aa)pd106). As expected, hearts from these animals showed clearly reduced innervation on the ventricular surface (Figure 1C, lower panel), but they appeared otherwise grossly normal. Quantification of surface innervation revealed a 90% reduction in cardiac innervation in cmlc2:sema3aa hearts as compared with controls (Figure 1G, n = 5, 6). Following ventricular resection, cmlc2:sema3aa hearts displayed a 40% reduction in cardiomyocyte proliferation at 7 days post amputation (dpa), assessed by Mef2/PCNA staining (n = 13, 16; Figures 1D–1F). When assessed at 30 dpa, a timepoint at which a contiguous wall of heart muscle is typically observed, cmlc2:sema3aa animals had a significantly lower regeneration score than wild-type siblings (Figure 1H–K, n = 9, 11). Thus, hypo-innervated zebrafish hearts display a diminished regenerative response after cardiac injury.
Pharmacological Inhibition of Cholinergic Transmission Reduces Cardiomyocyte Proliferation in Zebrafish and Neonatal Mice
We next designed an experiment to delineate whether cholinergic or adrenergic nerves were responsible for the nerve-dependent heart regeneration phenotypes. We amputated approximately 20% of the ventricle of zebrafish hearts and then exposed zebrafish to the non-selective muscarinic receptor antagonist atropine (50μM) to inhibit cholinergic transmission, or the beta-adrenergic receptor antagonist propranolol (50μM) following apical amputation. We observed many proliferating cardiomyocytes (PCNA/Mef2 double positive) in the regenerate of control zebrafish hearts at 7 dpa (Figure 2A, n = 4). In contrast, resected hearts that were exposed to atropine displayed a marked decrease in the number of proliferating cardiomyocytes (Figure 2B, n = 4). Atropine treatment resulted in a significant reduction in the number of proliferating cardiomyocytes compared to control (Figure 2E, p<0.001). On the other hand, zebrafish treated with the beta-adrenergic antagonist propranolol showed an increase in proliferating cardiomyocytes following amputation similar to controls (Figure 2C, n=4). To further explore the role of cardiac cholinergic transmission in regeneration, we examined the role of the type 2 muscarinic (M2) receptor, which is the most prevalent type of muscarinic receptor in the heart (Dhein et al., 2001). We treated zebrafish with the M2 receptor-specific antagonist methoctramine. Similar to hearts treated with atropine, we found a decrease in the number of proliferating cardiomyocytes at 7 days post-resection (Figure 2D, n=4). Quantification showed a significant reduction in the number of proliferating cardiomyocytes in the methoctramine treated zebrafish (Figure 2E, n=4). Treatment of zebrafish with atropine, propranolol and methoctramine alone without injury was used as an additional control. Pharmacological treatment had no impact on zebrafish well-being or on the heart morphology and baseline myocyte proliferation (Figure S1). These data implicate a specific role for cholinergic nerve activity in the proliferation of cardiomyocytes during regeneration.
We have recently reported extensive analysis of the neonatal mouse regenerative response following apical resection (Bryant et al., 2015). Given the demonstration of nerve function in zebrafish myocyte proliferation, we wanted to determine whether inhibition of cholinergic transmission by atropine halts cardiomyocyte proliferation during neonatal mouse heart regeneration. To test this hypothesis, we resected approximately 15 % of the ventricle of 1-day-old neonatal mice and then injected these mice with atropine (5 mg/kg) or vehicle twice-daily (Figure 2F). We performed immunostaining against the myocyte marker cardiac troponin t (cTnnt) and the mitosis marker phosphorylated histone H3 (pH3) on histological sections at 7 days post resection (dpr), a timepoint when cardiomyocyte proliferation is high following injury. Extensive cardiomyocyte proliferation was detected in vehicle-treated mice, while cardiomyocyte proliferation was markedly reduced in atropine-treated mice (Figure 2G and 2H, n = 6–8, p<0.005). To determine the impact on cytokinesis, we performed immunostaining with an antibody against Aurora B kinase, and we detected a significant reduction in the number of cardiomyocytes undergoing cytokinesis in the atropine treated mice (Figure 2I and J, n=4, p<0.05). There was no significant change in the number of non-myocyte nuclei in both vehicle and atropine treated hearts in both sham-operated and resected mice (Figure 2K). Vehicle-treated and atropine-treated sham-operated mice showed comparable body weights; whereas following resection there was a significant reduction in body weight of atropine treated mice compared to vehicle controls (Figure 2L). Taken together, these results suggest that cholinergic nerve signaling is required for the proliferation of cardiomyocytes during neonatal mammalian cardiac regeneration.
Mechanical Cholinergic Denervation in Neonatal Mice Reduces Cardiomyocyte Proliferation and Impairs Heart Regeneration
Although pharmacological agents represent a powerful tool to interfere with nerve function in the heart, secondary effects may arise due to globally antagonizing cholinergic nerve activity and transmission. In order to exclude non-cardiac effects due to systemic atropine administration, we developed a surgical procedure in 1 day-old neonatal mice in which we mechanically ablate the left vagus nerve, which directly innervates the heart (Figure 3A). In order to confirm that we specifically dissect out the nerve, the resected nerve portion was immunostained with the pan neuronal marker beta tubulin III (Tubb3); the resected nerve showed positive nerve staining (Figure 3B). Unilateral left vagotomy, but not right vagotomy, has been shown to upregulate M2 receptor expression as a compensatory response in the left atrium and left ventricle following denervation (Chen et al., 2008). To examine whether neonatal left vagotomy caused a similar effect on the expression of M2 receptors, we performed qPCR on the left ventricle at 7 days following vagotomy in neonatal mice. We detected the anticipated upregulation of M2 receptor gene expression in the left ventricular apex of vagotomized neonatal mice (Figure 3C, n=4 per group, p<0.01). These data confirm that left vagotomy in neonatal mice exhibits a similar response to left vagotomy in adult animals, and thus represents an approach for mechanical denervation.
To determine whether mechanical cholinergic denervation alone can impact the levels of cardiomyocyte cell cycle regulators, we performed gene expression analysis of multiple positive regulators of cardiomyocyte cell cycle as Cyclin D2 and Cdk4 by qPCR (Pasumarthi and Field, 2002). Similarly, we studied growth factors as Nrg1 and Ngf that have been previously shown to enhance cardiomyocyte proliferation (Bersell et al., 2009; Lam et al., 2012). Interestingly, positive regulators of cardiomyocyte cell cycle such as Cyclin D2 and Cdk4 were significantly downregulated following vagotomy (Figure 3D). In addition, Nrg1 and Ngf were significantly downregulated in the vagotomized neonatal mice (Figure 3D). These data indicate that neonatal mouse vagotomy directly regulates the cardiomyocyte cell cycle state at the molecular level. To examine whether left vagotomy has an impact on heart rate following vagotomy, we measured the heart rates of mice at 7 days post vagotomy. We found no significant differences in the heart rates of control and vagotomized mice at resting conditions (Figure 3E).
We performed a double surgical procedure where neonates undergo vagotomy paired with apical resection to assess whether vagotomy compromises neonatal heart regeneration. Interestingly, the neonatal mice that underwent apical resection paired with vagotomy of the heart showed lower levels of proliferating cardiomyocytes, similar to both sham operated and vagotomized mice (Figure S2A). Quantification of the pH3 positive cardiomyocytes showed a significant decrease in the number of proliferating cardiomyocytes in resected plus vagotomized mice compared to resection alone (Figure S2B, n=5, p<0.05).
Similar to regeneration following apical resection, neonatal mice have the capacity to regenerate their hearts following myocardial infarction (MI), a major cause of heart failure in humans (Mahmoud et al., 2014; Porrello et al., 2013). We performed both MI + vagotomy on 1 day-old mice (Figure 4A). Interestingly, the mice that underwent the double surgery had a higher mortality rate compared to either vagotomy or MI alone. Kaplan-Meier survival analysis showed that combined vagotomy and MI significantly increased mortality (Figure 4B). At day 7 following MI + vagotomy, immunohistochemistry of pH3 and cTnnt showed reduction of proliferating cardiomyocytes in the MI + vagotomy mice compared to MI alone (Figure 4C and D, n=4–6, p<0.05). No significant changes were observed in the number of proliferating non-myocytes (Figure 4E). In addition, there was a significant reduction in the number of cardiomyocytes undergoing cytokinesis as detected by aurora b staining (Figure 4F and G, n=4, p<0.05). There was a trend toward a decrease in the heart weight to body weight (HW/BW) ratio of MI + vagotomy mice compared to MI only, but this trend was not statistically significant (Figure 4H).
To further establish the effects of mechanical denervation on neonatal heart regeneration, we performed Trichrome staining 21 days post injury to assess regeneration and fibrosis in both MI + Vagotomy mice compared to either MI or sham operated mice. The MI + vagotomy mice demonstrated little to no regrowth below the ligated plane of the heart with the presence of a fibrotic scar (Figure 4I). In contrast, animals that had undergone MI alone demonstrated complete heart regeneration with little to no scar formation (Figure 4I). Quantification of regeneration showed a significantly reduced regeneration score following MI + vagotomy (Figure 4J, n=5). To determine whether levels of cardiac innervation are changed beyond the regenerative window, we performed immunostaining of cardiac nerves with the neuronal marker Neurofilament in both P1 and P21 hearts and detected similar patterns of innervation (Figure S3). Collectively, our results show that mechanical ablation of nerves can inhibit the neonatal mouse cardiac regenerative response, which highlights the intimate involvement of nerves during heart regeneration.
Rescue of Mechanically Denervated hearts by Neuregulin1 (Nrg1) and Nerve Growth Factor (Ngf)
To test whether acetylcholine (Ach) as well as the growth factors Nrg1 and Ngf can stimulate cardiomyocyte proliferation, we treated cultured neonatal rat ventricular cardiomyocytes with these factors for 48 hours and measured DNA synthesis by 3H-thymidine incorporation (Figure 5A). Nrg1 was able to increase cardiomyocyte DNA synthesis, but not acetylcholine or Ngf (Figure 5B). These data suggest that acetylcholine cannot directly stimulate cardiomyocyte proliferation at the M2 muscarinic receptor level, while Nrg1 can directly induce myocyte DNA synthesis as has been previously established (Bersell et al., 2009). Although Ngf did not cause a significant induction of myocyte DNA synthesis, it has been shown to enhance recovery post injury suggesting that Ngf may enhance cardiac repair indirectly (Lam et al., 2012; Meloni et al., 2010). This suggests that Ngf may enhance cardiac repair indirectly.
To determine whether inhibition of regeneration by mechanical denervation could be partly rescued through Nrg1 and Ngf, we injected these recombinant proteins in neonatal mice post MI + Vagotomy (Figure 5C). At 7 days post injury, there was a significant increase in the number of pH3 positive cardiomyocytes in the treated mice compared to controls (Figure 5D and E, n=4–5, p<0.05). A significant increase in the number of cardiomyocytes undergoing cytokinesis as determined by Aurora B staining was detected as well (Figure 5F and G, n=4, p<0.05). At 21 days post injury, there was reduced scar formation in the Nrg1 and Ngf treated mice (Figure 5H, n=6). Quantification of regeneration showed a significantly higher regeneration score in the Nrg1 and Ngf treated mice (Figure 5I). These data suggest that nerves stimulate heart regeneration partly through growth factors as indicated by supplying recombinant Nrg1 and Ngf following mechanical denervation.
To examine whether cholinergic stimulation can enhance regeneration in vivo, we performed MI at P7, a time point when myocyte proliferation and regeneration is limited (Porrello et al., 2013). We injected the mice with the cholinergic agonist carbachol for 7 days (Figure 5J). At 7 days post injury, no significant difference in cardiomyocyte proliferation was detected (Figure 5K and L, n=5–6). These data suggest that cholinergic stimulation in vivo does not appear sufficient to induce cardiomyocyte proliferation.
Mechanical Denervation Disrupts Inflammatory Gene Expression Following Apical Resection in the Mouse
To gain insight into the early factors that might be responsible for nerve-dependent heart regeneration we performed expression analysis on the heart ventricular apex from animals that had undergone sham operation, apical resection, or apical resection and left vagotomy. RNA was extracted from the ventricular apex 24 hours after surgery and RNAsequencing was performed. As previously reported, apical resection stimulates a strong immune response 24 hours post surgery (Aurora et al., 2014; O’Meara et al., 2014). The most striking difference in gene expression between resected and resected plus vagotomy was the blunted expression of inflammatory genes activated upon resection (Figure 6A). Genes that were significantly upregulated in resected versus sham hearts and also significantly downregulated in resected+vagotomy versus resected hearts fell into gene ontology biological processes such as immune response, response to wounding, and chemotaxis (Figure 6B). Specifically, genes involved in the innate immune response and chemotaxis (IL1b, Cxcl5, and Pf4) were downregulated to almost baseline levels (Figure 6C). On the other hand, expression of several immune genes involved in lymphocyte mediated immunity and adaptive immune response (Icam-1, Slc11a1, Bcl6 and Nfkb2) was not blunted in response to vagotomy. A large subset of genes showed similar expression patterns in sham and resected hearts but were upregulated (Translation, RNA processing) or downregulated (Proteolysis, catabolic processes) after vagotomy. These genes are not likely related to the nerve dependent regeneration phenotype since they were not modulated upon resection alone. To determine whether similar transcriptional changes that regulate cholinergic-mediated cardiac regeneration are conserved across species, we performed a microarray on atropine treated zebrafish at 24 hours following resection. Interestingly, there was a significant downregulation of immune response genes in the atropine treated zebrafish compared to control (Figure S4). These data suggest that immune function plays an important role in both zebrafish and heart regeneration, and in both models the immune response is blunted by cholinergic inhibition. Collectively, our results reveal a requirement for nerves in guiding cardiac regeneration in both zebrafish as well as neonatal mice by regulating cardiomyocyte proliferation (Figure 7).
DISCUSSION
Multiple species throughout the animal kingdom mediate their regenerative response through nerve activity; we sought to explore whether similar mechanisms are evolutionarily conserved in heart regeneration (Kumar and Brockes, 2012). Our data demonstrate that nerves are required for cardiomyocyte proliferation and heart regeneration of both zebrafish and neonatal mice. Hypo-innervation of the adult zebrafish heart using transgenic zebrafish reduces myocyte proliferation and heart regeneration. Pharmacological inhibition of cholinergic nerve function reduces cardiomyocyte cell cycle activity in both zebrafish and neonatal mice. In addition, we demonstrate that mechanical denervation of the left vagus nerve in neonatal mice reduces cell cycle gene expression, cardiomyocyte proliferation and prevents heart regeneration following both apical resection and myocardial infarction suggesting a critical role for cholinergic nerve activity in heart regeneration. Administration of recombinant proteins of Nrg1 and Ngf increases cardiomyocyte proliferation and enhances regeneration following denervation. RNAseq analysis of mechanically denervated hearts demonstrates a significant impact of denervation on inflammatory pathways gene expression. A similar effect was observed in zebrafish following pharmacological inhibition of cholinergic nerve function.
This study sheds light on a requirement for nerves in regulating cardiomyocyte proliferation and heart regeneration in lower vertebrates and mammals. Nerves appear to be essential for the homeostasis of the adult human heart as well, due to re-innervation of the adult human heart post transplantation (Cornelissen et al., 2012; Gallego-Page et al., 2004). Recent studies have uncovered multiple regulators of mammalian cardiac regeneration (Aurora et al., 2014; Chen et al., 2013; Eulalio et al., 2012; Heallen et al., 2013; Mahmoud et al., 2013; Porrello et al., 2011a; Puente et al., 2014; Xin et al., 2013), yet the differences and/or similarities of evolutionary conserved regenerative mechanisms between lower organisms and mammals is not yet clear. We demonstrate that the impact of nerves seems to affect both the expression of growth factors as well as the inflammatory response post injury. Owing to the established role of semaphorin signaling in vascular patterning (Epstein et al., 2015), it is not clear whether a vascular mechanism is involved in the regenerative response as well. Interestingly, modulating expression of growth factors as Ngf by cholinergic signaling has been reported following cholinergic denervation in the brain (da Penha Berzaghi et al., 1993; Lapchak et al., 1993), suggesting interplay between cholinergic nerves and Nrg1 and Ngf activity. Recent reports identified Nrg1 as an inducer of myocyte proliferation in zebrafish, as well as in mice within the first week of birth, through the Nrg1 co-receptor Erbb2 (D’Uva et al., 2015; Gemberling et al., 2015; Polizzotti et al., 2015). Our rescue experiments with Nrg1 and Ngf indicate that administration these factors may partially rescue the effect of denervation, but whether these factors specifically mediate the nerve effect is unclear. Attempts at identifying nerve-derived factors during regeneration have been pursued, but their exact role in different species is not completely understood (Kumar and Brockes, 2012; Kumar et al., 2007). It remains to be determined whether nerves directly release these mitogens, or regulate their expression. In addition, the impact of cholinergic signaling on inflammation has been previously studied (Martelli et al., 2014). The role of the immune system has been shown to mediate a proper regenerative response following injury as well (Aurora et al., 2014; Godwin et al., 2013; Lavine et al., 2014) perhaps suggesting interplay between cholinergic nerves and immune response in facilitating heart regeneration. Collectively, our study identifies a dual role of nerves in heart regeneration in both lower vertebrates and mammals by regulating mitogen and inflammatory gene expression following injury.
EXPERIMENTAL PROCEDURES
Experimental Animals
All experiments were conducted in accordance with the Guide for the Use and Care of Laboratory Animals and approved by the Harvard Medical School Standing Committee on Animals. Timed-Pregnant ICR/CD1 mice used to deliver pups were obtained from Charles River Laboratories.
Zebrafish Amputations
Adult zebrafish from 3–5 months were used for apical amputations as described previously (Poss et al., 2002).
Neonatal Mouse Apical Resection and Myocardial Infarction
Neonatal mouse apical resections and myocardial infarctions were performed on 1-day-old and 7-day-old pups as described previously (Mahmoud et al., 2014).
Neonatal Mouse Vagotomy
Neonatal mice were anesthetized on ice. The neck area was cleaned three times alternately using alcohol and betadine in preparation for surgery. A lateral incision of about 5 mm was made approximately 2–3 millimeters from the clavicle on the left center side of the throat. The lobes of the salivary glands were gently separated and the fascia and fatty tissue were separated until the carotid jugular bundle was visualized. The carotid artery and jugular vein were gently isolated until the vagus nerve was visible. The vagus nerve was firmly grasped and pulled towards the head of the mouse until the vagus broke. A segment of about 3–6 mm is sufficient to ensure complete separation with little chance of reattachment. Mice that had resection of a smaller part of the vagus were excluded from the analysis.
Administration of Pharmacological Agents
For zebrafish experiments, atropine was mixed with tank water and changed daily. Atropine or propranolol was added at a concentration of 50 μM. Methoctramine was added at a concentration of 50 nM.
For neonatal mice, atropine was dissolved in phosphate buffered saline (PBS) and administered to neonatal mice following apical resection at P1 by intraperitoneal injections twice daily at a concentration of 5mg/kg. Carbachol was injected at a concentration of 50 μM. PBS administration was used as vehicle.
Generation of Transgenic Lines
cmlc2:sema3aa
sema3aa cDNA was amplified with the primers 5′-ACAATGGATTACCTTGTTGG-3′ and 5′-ACATTACACGCTGCGTGGTGG-3′ and subcloned behind the 5.1 kb cmlc2 (myl7 – Zebrafish Information Network) promoter (Rottbauer et al., 2002). The cassette was co-injected into one-cell stage wild-type embryos with I-SceI. Two founders were isolated and propagated. The full name of this transgenic line is Tg(cmlc2:sema3aa)pd106.
Histological Analysis
Primary and secondary antibody staining was performed as described (Kikuchi et al., 2011). Whole mount nerve staining was performed as follows. Heart were fixed in 4% PFA for 1 hour at room temperature with atria removed. Heart were then washed 4 X 5 minutes with PBS that contained 0.3% tween-20 (PBT). Hearts were placed in blocking media (0.3% PBT, 2% horse serum, 1% DMSO, and 10% calf-serum (Heat inactivated)) for 2 hours room at 4°C on rotator. Block media was removed and replaced with antibody staining solution (0.3% PBT, 1% DMSO, 1:100 acetylated- alpha-tubulin, and 10% calf-serum (Heat inactivated) overnight at 4°C. Hearts were then placed in mounting media between coverslips for imaging.
Acid Fuchsin-Orange G staining was performed on 10 μm sections as described (Poss et al., 2002). Mef2/PCNA staining on sections from 7 dpa ventricles was performed and imaged as described (Kikuchi et al., 2011). Mef2+ and Mef2+/PCNA+ cells were counted manually. The three largest injuries from each heart were averaged to compute a proliferative index for each animal. Primary antibodies used in this study: anti-PCNA (mouse; sigma) at 1:250, anti-Mef2 (rabbit; Santa Cruz Biotechnology) at 1:75, and anti-acetylated alpha-tubulin (mouse; Sigma) at 1:100. Secondary antibodies used in this study: Alexa Fluor 594 goat anti-mouse IgG (H+L) for anti-Mef2, anti-PCNA, and anti-acetylated alpha-tubulin; and Alexa Fluor 488 goat anti-rabbit IgG (H+L) for anti-Mef2 and anti-PCNA. Secondary antibodies (Invitrogen) were all used at 1:200.
Mouse hearts were fixed in 4% paraformaldehyde and paraffin embedded. Paraffin sections were deparaffinized in xylene and rehydrated by graded alcohols, followed by antigen retrieval with antigen retrieval citrate solution (DAKO) in boiling water for 20 minutes. Slides were cooled at room temperature for 30 minutes; sections were blocked with 10% goat serum, and incubated with pH3 (Millipore, 1:200), Aurora B (Sigma, 1:100) cardiac Tnnt (Abcam, 1:200) and Tubb3 (Abcam, 1:500) antibodies overnight at 4°C. The following day, sections were washed with PBS and incubated with corresponding secondary antibodies conjugated to Alexa Fluor 488 and Alexa Fluor 568 (Invitrogen).
Trichrome staining was performed on neonatal mouse hearts fixed in 4% paraformaldehyde and paraffin embedded. Sections were deparaffinized, placed in Bouin’s fluid at 60°C for 1 hour, and then rinsed for 5 minutes in deionized water. Sections were then stained with iron hematoxylin for 10 minutes then rinsed in deionized water for 10 minutes. Sections were stained with Biebrich Scarlet-Acid Fuchsin solution for 5–10 minutes then rinsed in deionized water for 30 seconds. Sections were placed in Phosphotungstic-Phosphomolybdic Acid solution for 5 minutes, and then stained in Aniline Blue for 5–10 minutes. Slides were placed in 1% Acetic Acid for 1 minute, rinsed in deionized water for 30 seconds, followed by dehydration in alcohol for two minutes then mounted with a coverslip.
Quantification of Innervation
Whole mount images obtained from cmlc2:sema3aa hearts and controls stained with acetylated-alpha tubulin, were imported into Photoshop and merged using the photomerge function. Subsequent brightness and contrast adjustments were made to allow for proper masking of the nerves. Images were then imported to ImageJ, where thresholding was set to define the area of the nerves. Masks for total area of the heart and nerve area were quantified using ImageJ. Nerves were quantified by calculating the total area of the nerves divided by the total area of the surface of the heart to calculate a percent nerve area. Quantification was performed for the surface of the heart opposite the valve.
Quantification of Regeneration
Regenerates were scored on a scale from 1 to 3 after Acid-Fuschin Orange staining for zebrafish and trichrome staining for mice. “1” indicated complete regeneration (signified by contiguous muscle and little to no scarring), “2” indicated partial regeneration (signified by moderate scarring and partial muscle regeneration), and “3” indicated a block in regeneration (clear gap in ventricular wall, filled by fibrin and scar). Representative images from each animal were scored by 3 individuals blinded to the identities of the animals. The average score for each heart was calculated and rounded to the nearest whole number.
Real-Time PCR
Total RNA was isolated from zebrafish and mouse hearts using Trizol (Invitrogen) and reverse transcription for cDNA synthesis was performed using random hexamer primers with the High-Capacity cDNA Reverse Transcription Kit (Invitrogen). Validated primers from MGH primer bank (http://pga.mgh.harvard.edu/primerbank/) were ordered from Integrated DNA technologies. Real time PCR was performed with SYBR Green (Applied Biosystems) on CFX384 Touch Real-Time PCR detection system (Bio-Rad). GAPDH, Beta-actin, and 18S were used as a loading control to normalize gene expression using the ΔΔCt method.
RNA Sequencing and Analysis
At 24 hours post-procedure, neonatal mouse hearts were isolated and perfused in 1X PBS. Total RNA was extracted from the lower half of the ventricle using Trizol (Invitrogen) according to the manufacturer’s protocol. The Poly(A) mRNA Isolation Module (Wafergen, Cat# 400047) was used to isolate poly-adenylated RNA from 0.2 to 1.0 μg of total RNA. The polyadenylated RNA was fragmented, and the first and second strand synthesis were performed on a Wafergen Apollo 324 System using the IntegenX Directional PrepX mRNA kit (IntegenX). The addition of barcodes and minimal library amplification were done using PCR. Library clustering and paired-end (50 bp read lengths) sequencing were performed on an Illumina HiSeq 2500. Three biological replicates for each group (sham, resection, and resection + vagotomy) were processed and sequenced as described above. Sequencing reads were aligned to the GRCm38 mouse genome using Tophat (Kim et al., 2013). Cufflinks was used to assemble transcripts and to estimate transcript abundances, which are measured in fragments per kilobase per million fragments mapped (FPKM) (Trapnell et al., 2010). A q-value cutoff of 0.05 was used to determine the statistical significance of differentially expressed genes. The heatmaps were generated in Java Treeview (Saldanha, 2004). Gene ontology (GO) categories were determined using the Database for Annotation, Visualization and Integrated Discovery (DAVID) (Huang da et al., 2009a, b). Benjamini-Hochberg-corrected p-values are reported for enriched biological processes. RNAseq data has been uploaded to the gene expression omnibus (GEO accession GSE69855).
Isolation, Culture and Treatment of Neonatal Rat Cardiomyocytes
Rat ventricular cardiomyocytes were isolated from P1 neonatal Sprague Dawley rats as previously described (Liao and Jain, 2007). Cardiomyocytes in serum free media were treated with multiple doses of acetylcholine, Nrg1 (R&D) and Ngf (Sigma) followed by quantification of 3H thymidine incorporation.
3H Thymidine Incorporation
To quantify 3H thymidine incorporation, cardiomyocytes were treated with 3H thymidine 24 hours before collection. Cells were washed with PBS and lysed with 0.1M NaOH + 0.1% SDS. Quantification was performed using the LS 6500 Scintillation Counter (Beckman Coulter).
Statistical Analysis
All data are presented as mean ± SEM. Student’s unpaired t test or one way ANOVA was used for comparisons between two groups unless otherwise noted. A value of P < 0.05 was considered significant.
Supplementary Material
Acknowledgments
We thank the Lee and Poss laboratory members for helpful discussions, J. Burris, N. Blake, S. Davies, and A. Dunlap for zebrafish care, and A. Dickson for quantitative analysis of images. This work was supported by an American Heart Association Postdoctoral fellowship 15POST21870000 (A.I.M.), NIH F32HL117595 Postdoctoral Fellowship (C.C.O.), and an HHMI Gilliam Fellowship (D.M.B.). M.G. was supported by a fellowship from the AHA. L.Z. was supported by a fellowship from the AHA (14POST20380738). W.Y.C. was supported by a fellowship from NIH (F32 HL106987-02). This work was supported by a grant from the NIH (HL127067) to C.E.B. and C.G.B., (HL081674) to K.D.P. and NIH grants (AG040019) and (HL117986) to R.T.L.
Footnotes
AUTHOR CONTRIBUTIONS
A.I.M. and C.C.O. designed and performed the experiments, analyzed the data, made the figures and wrote the paper. M.G., W.C., G.F.E. and K.D.P. generated the cmlc2:sema3aa zebrafish and assessed cardiac innervation and heart regeneration in these animals. L.Z., R.Z., D.M.B., J.B.G. and L.C. performed experiments. C.E.B., C.G.B. and C.A.M. supervised experiments and edited the paper. R.T.L. conceived the study, designed experiments and wrote and edited the paper.
Supplemental information includes supplemental materials and methods and two figures and can be found with this article online.
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