Table 1. Methods used to test for KRAS, NRAS and BRAF mutations.
KRAS | NRAS | BRAF | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Method* | codon 12/13 N (%) |
codon 59 N(%) |
codon 61 N (%) |
codon 117 N (%) |
codon 146 N(%) |
codon 12/13 N (%) |
codon 59 N (%) |
codon 61 N(%) |
codon 117 N (%) |
codon 146 N (%) |
codon 600 N (%) |
Next generation sequencing | |||||||||||
Illumina MiSeq Oncopanet (Illumina)[25] | 10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
0 (0,0) |
0 (0,0) |
10 (5,8) |
IonTorrent (Life Sciences) | 20 (11,7) |
20 (11,7) |
20 (11,7) |
20 (11,7) |
20 (11,7) |
20 (11,7) |
20 (11,7) |
20 (11,7) |
10 (5,8) |
20 (11,7) |
20 (11,7) |
Sequencing | |||||||||||
Sanger Sequencing | 51 (29,8) |
61 (35,7) |
61 (35,7) |
73 (42,7) |
84 (19,2) |
74 (43,3) |
84 (49,2) |
74 (434) |
83 (48,6) |
73 (487) |
51 (29,8) |
HRM + Sanger Sequencing |
60 (35.1) |
60 (15.1) |
60 (35.1) |
30 (17.5) |
30 (17.5) |
.30 117.5) |
30 (17.5) |
30 (17.5) |
0 (0.0) |
0 (0.0) |
40 (23.4) |
Real-time PCR + Sanger sequencing | 10 (5,8) |
0 (0,0) |
0 (0,0) |
0 (0,0) |
0 (0,0) |
10 (5,8) |
0 (0,0) |
10 (5,8) |
0 (0,0) |
0 (0,0) |
10 (5,8) |
Pyrosequencing | 0 (0,0) |
0 (0,0) |
0 (0,0) |
0 (0,0) |
0 (0,0) |
0 (0,0) |
0 (0,0) |
0 (0,0) |
10 (5,8) |
10 (5,8) |
0 (0,0) |
Other assays | |||||||||||
Therascreen KRAS/NRAS/BRAF Pyrokit (Qiagen) | 10 (5,8) |
0 (0,0) |
10 (5,8) |
0 (0,0) |
0 (0,0) |
10 (5,8) |
0 (0,0) |
10 (5,8) |
0 (0,0) |
0 (0,0) |
10 (5,8) |
Therascreen RAS extension Pyrokit (Qiagen) | 0 (0,0) |
10 (5,8) |
0 (0,0) |
10 (5,8) |
10 (5,8) |
0 (0,0) |
10 (5,8) |
0 (0,0) |
10 (5,8) |
10 (5,8) |
- |
Sequenom MassArray (Sequenom) | 10 (5,8) |
0 (0,0) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
10 (5,8) |
Total samples tested |
171 (100) |
161 (94,2) |
171 (100) |
153 (89,5) |
161 (95,9) |
164 (95,9) |
164 (95,9) |
161 (95,9) |
123 (71,9) |
123 (71,9) |
151 (88,3)* |
Total 171 samples received from 17 labs, 10 samples per lab, 1 lab sent 11 DNA samples;
4 laboratories only test BRAF on request by the physician.
Note: for each codon. the most frequently used method is highlighted in bold