Abstract
Excitotoxicity following cerebral ischemia elicits a molecular cascade, which leads to neuronal death. c-Jun-N-terminal kinase (JNK) has a key role in excitotoxic cell death. We have previously shown that JNK inhibition by a specific cell-permeable peptide significantly reduces infarct size and neuronal death in an in vivo model of cerebral ischemia. However, systemic inhibition of JNK may have detrimental side effects, owing to blockade of its physiological function. Here we designed a new inhibitor peptide (growth arrest and DNA damage-inducible 45β (GADD45β-I)) targeting mitogen-activated protein kinase kinase 7 (MKK7), an upstream activator of JNK, which exclusively mediates JNK's pathological activation. GADD45β-I was engineered by optimizing the domain of the GADD45β, able to bind to MKK7, and by linking it to the TAT peptide sequence, to allow penetration of biological membranes. Our data clearly indicate that GADD45β-I significantly reduces neuronal death in excitotoxicity induced by either N-methyl-D-aspartate exposure or by oxygen–glucose deprivation in vitro. Moreover, GADD45β-I exerted neuroprotection in vivo in two models of ischemia, obtained by electrocoagulation and by thromboembolic occlusion of the middle cerebral artery (MCAo). Indeed, GADD45β-I reduced the infarct size when injected 30 min before the lesion in both models. The peptide was also effective when administrated 6 h after lesion, as demonstrated in the electrocoagulation model. The neuroprotective effect of GADD45β-I is long lasting; in fact, 1 week after MCAo the infarct volume was still reduced by 49%. Targeting MKK7 could represent a new therapeutic strategy for the treatment of ischemia and other pathologies involving MKK7/JNK activation. Moreover, this new inhibitor can be useful to further dissect the physiological and pathological role of the JNK pathway in the brain.
In many disorders of the nervous system, overactivation of N-methyl-D-aspartate (NMDA) receptors leads to neuronal death and consequent neurological impairment. NMDA-induced neuronal death, that is, excitotoxicity, has been implicated in many neurodegenerative diseases such as stroke, epilepsy, Alzheimer disease, spinal cord injury, traumatic brain injury, hearing loss, Parkinson's and Huntington diseases.1 However, the molecular mechanisms underlying excitotoxic neuronal death remain only partially understood.
Excitotoxicity triggers complex signal transduction events that induce the neuronal death program. Among them, activation of the c-Jun N-terminal kinase (JNK) pathway has a key role.2, 3, 4, 5 There are only two direct upstream activators of JNK: mitogen-activated protein kinase kinase 4 and 7 (MKK4 and MKK7).6, 7 In some cell types, MKK4 activates JNK primarily in response to stress stimuli, whereas MKK7 signaling is triggered by release of inflammatory cytokines.8, 9, 10 In neurons, however, we showed that MKK7 is mainly responsible for JNK overactivation during excitotoxicity both in vitro3 and in vivo following middle cerebral artery occlusion (MCAo).4 Conversely, MKK4 controls JNK physiological role and its activation is not affected by excitotoxic stimuli.3
Inhibition of the JNK pathway by the specific JNK inhibitor peptide, D-JNKI1, has been proposed for the treatment of ischemia.2 D-JNKI1 induces powerful neuroprotection in in vitro models of excitoxicity2, 11 and leads to a 93% reduction in the infarct size in rodent models of ischemia.2, 4, 12 Despite the potent and long-lasting neuroprotective effect of D-JNKI1, total inhibition of JNK is not deprived of negative side effects, as it regulates a variety of physiological events13 such as cell proliferation, survival and differentiation.13 For these reasons, MKK7 may represent a more attractive target for clinical application, as it activates JNK specifically after toxic stimuli. Thus, by targeting MKK7 the physiological role of JNK, regulated by MKK4, will be preserved.
Here we designed a set of new cell-permeable inhibitor peptides able to block MKK7 activity and protect against excitotoxic death.
We took advantage of the growth arrest and DNA damage-inducible 45β (GADD45β) ability to bind MKK7.9, 14, 15 GADD45β is involved in the control of cell stress responses in cell cycle, DNA repair and oncogenesis.9, 16 GADD45β binds tightly to MKK7 and inhibits its enzymatic activity15 by interacting with its catalytic domain.9 More importantly, GADD45β inhibition is MKK7-specific and has no effect on MKK4, MKK3/6 and MEK1/2 activity.9 The minimal essential domain of interaction between MKK7 and GADD45β has already been defined (GADD45β60–86 and 69–86 sequences).15 We here used in silico approaches to design an effector peptide, based on the domain of GADD45β, and optimize its affinity for MKK7. We then linked the effector peptide to a TAT-cargo in order to penetrate neuronal plasma membrane.17 The selected cell-permeable MKK7 inhibitor peptide (GADD45β-l) confers neuroprotection in vitro against NMDA and oxygen–glucose deprivation (OGD) toxicity, as well as in vivo in two models of MCAo with a clinically relevant post-ischemic temporal window (6 h) at both 24 h and 1 week after lesion. These data shed light on a new approach for the treatment of ischemia.
Results
Design and development of TAT-MKK7 inhibitor peptides: GADD45β-I
The minimal essential region of GADD45β that interacts with MKK7 is at residues 60–86, but another region (residues 104–113) seems to have a more marginal role to stabilize the interaction between GADD45β and MKK7 (Papa et al.15) (Figure 1a). As shown in Figure 1a, reporting the structure of GADD45β obtained by homology modeling, residues 60–86 form a helix-turn motif (Figure 1b). Most of the residues in this region are hydrophilic and residues 62–68 are all negatively charged. Residues 104–113 form a long loop with an alternation of hydrophilic and negative residues (Figure 1b), and its marginal role in the GADD45β–MKK7 protein–protein interaction is probably due to the highly flexible nature of this portion of GADD45β.
GADD45β interacts with MKK7 in proximity of its ATP-binding site9 and this may justify the presence of acidic residues able to establish electrostatic interactions with the basic residues in this site.9
The docking results put in evidence that in the majority of the complexes obtained, region 60–86 is able to interact with MKK7 (Figure 1a), matching the experimental data already available.9, 14, 15 In detail, the α-helix of GADD45β establishes a network of hydrogen bonds with the β-sheets forming the MKK7 ATP-binding site (Figure 1a). The negatively charged residues following GADD45β α-helix interact through a cluster of electrostatic interactions with the positively charged residues of MKK7 (Figure 1a).
These pieces of information were used to design two peptides able to interact with MKK7 and inhibiting its function. The first peptide (GADD45β69–86) was designed by considering only the sequence of the α-helix (residues 69–86) and avoiding the cluster of negative residues (Figure 1c).
Consistently with in silico prediction, GADD45β69–86 showed an affinity in the low micromolar range for recombinant MKK7 in vitro, as assayed by surface plasmon resonance (SPR, Figure 2). Of note, the measured binding affinity (3.71 μM) of the GADD45β69–86 peptide for recombinant MKK7 was in good agreement with the biologically relevant concentrations observed in subsequent experiments. The TAT sequence was then been added to the N-terminal region of the peptide (Figure 1c). A second peptide (TAT-GADD45β60–86) was designed by considering all the regions formed by residues 60–86 (Figure 1d). As previously stated, residues 62–68 are all negatively charged and they could have a key role in stabilizing the interaction. However, this peptide showed poor solubility in water. To avoid the interaction between the negatively charged residues in the effector and the positively charged amino acids of the TAT peptide, a spacer sequence was added between the peptide and the TAT (TAT-spacer-GADD45β60–86) (Figure 1d). To validate the specificity of TAT-GADD45β69–86 and TAT-spacer-GADD45β60–86 peptides we designed a control peptide, TAT-GADD45β60–86 CONTROL, where 17 residues out of 27 composing the GADD45β60–86 peptide were changed. In detail, the control peptide was obtained by substituting all the negative charges with alanine residues (Figure 1d). Moreover, to achieve a complete inhibition of interaction with MKK7, we made the peptide less specific as possible by also mutating in alanine or glycine the amino acids with physical–chemical characteristics that could have a cooperative effect on the binding (Figure 1c; i.e., Gln, His, Phe, Thr and Cys, and Figure 1d). Based on these predictions, the control peptide TAT-GADD45β60–86 CONTROL was designed in order to be an inactive peptide.
Effect of GADD45β−I peptides on cultured neurons
The cell-permeable MKK7 inhibitor peptides were tested in primary cultures from dissociated cortical neurons. Toxicity of the peptides was assessed after 24 h with LDH assay. Application of both TAT-GADD45β69–86 and TAT-spacer-GADD45β60–86 peptides did not induce neuronal death for concentrations as high as 10 μM (one-way ANOVA, P>0.05) (Figure 3a). Conversely, the control (5′-AIAAAAAAAIALGIGAGLIGSAAGNGAGAGAAGRKKRRQRRR-3′) peptide, TAT-GADD45β60–86 CONTROL application for 24 h resulted in an increase of neuronal death at the higher dosages (5 and 10 μM) (not shown, one-way ANOVA, Tukey's post-hoc test, ***P<0.001).
NMDA neurotoxicity and neuroprotection by GADD45β−I peptides
The TAT-GADD45β69–86, the TAT-spacer-GADD45β60–86 and the TAT-GADD45β60–86 CONTROL peptides were tested against NMDA toxicity in vitro. Addition of the cell-penetrating GADD45β−l peptides at the concentration of 1, 2.5 and 5 μM protected neurons against excitotoxicity induced by exposure to 100 μM NMDA for 6 h (Figure 3b). In fact, the TAT-GADD45β69–86 peptide exerts a 65% protection against NMDA insult at 2.5 μM concentration, whereas the TAT-spacer-GADD45β60–86 peptide protects by 53, 64 and 125% at 1, 2.5 and 5 μM, respectively (one-way ANOVA, Tukey's post-hoc test, ***P<0.001 NMDA versus CTR, #P<0.05 NMDA+MKK7I versus NMDA, ##P<0.01 NMDA+MKK7I versus NMDA and ###P<0.001 NMDA+MKK7I versus NMDA) (Figure 3b). Similar results were obtained after 12 h of NMDA exposure (Figure 3b). In this case, both TAT-GADD45β69–86 and TAT-spacer-GADD45β60–86 peptides lead to a significant protection of 59 and 56%, respectively, at the higher dose tested (5 μM) (one-way ANOVA, Tukey's post-hoc test, ***P<0.001 NMDA versus CTR, #P<0.05 NMDA+MKK7I versus NMDA and ###P<0.001 NMDA+MKK7I versus NMDA). As expected TAT-GADD45β60–86 CONTROL peptide showed no protection for all the concentrations tested (1, 2.5 and 5 μM) and both time points (6 and 12 h) (Supplementary Figure S1, one-way ANOVA, P>0.05). Thus, the protective effect of the TAT-GADD45β69–86 peptides is entirely accountable to the peculiar amino acids composition of the region between residues 69–86 of the GADD45β protein.
Out of the two peptides tested, TAT-spacer-GADD45β60–86 resulted as the most efficient in preventing NMDA excitotoxicity. Therefore, we decided to use this peptide for the following experiments. We tested TAT-spacer-GADD45β60–86 in an in vitro model of OGD. TAT-spacer-GADD45β60–86 (5 μM) inhibited by 95% the neuronal death induced by 12 h OGD (one-way ANOVA, Tukey's post-hoc test, **P<0.01 OGD versus CTR and ##P<0.01 OGD+MKK7I versus OGD) (Figure 3c).
Efficacy and specificity of GADD45β−I peptides
We tested the specificity of the TAT-spacer-GADD45β60–86 peptide for MKK7. Application of NMDA for 5, 30 and 60 min triggers MKK7 activation in neurons3 by increasing its phosphorylation by 1.7-, 1.5- and 1.9-fold, respectively, confirming its pivotal role in excitotoxicity (two-way ANOVA, Tukey's post-hoc test, *P<0.05 CTR versus NMDA and ***P<0.001 CTR versus NMDA) (Figure 4a). Treatment with the TAT-spacer-GADD45β60–86 peptide abolishes MKK7 phosphorylation in cortical neurons, inhibiting the kinase activity after either 5, 30 or 60 min of NMDA application by 78, 146 and 64%, respectively (two-way ANOVA, Tukey's post-hoc test, ##P<0.01 MKK7I+NMDA versus NMDA) (Figure 4a). On the contrary, NMDA application does not affect MKK4 activation and treatment with TAT-spacer-GADD45β60–86 peptide has no effect on MKK4 pathway (two-way ANOVA, interaction >0.05) (Figure 4b).
MKK7 inhibition is protective in two in vivo models of cerebral ischemia
The TAT-spacer-GADD45β60–86 inhibitor peptide (referred as GADD45β−I) was tested in the MCAo and the thromboembolic ischemia model in rats.
MCAo model
We used this ischemic model to perform most of the experiments. Two different paradigms of GADD45β−l administration were chosen as follows: (1) 30 min before (pre-ischemic injection) and (2) 6 h after cerebral ischemia (clinical setting). Infarct area measurements were performed on 2,3,5-triphenyltetrazolium chloride (TTC)-stained brain slices 24 h after ischemia. In all animals, MCAo affected the right frontoparietal cortex areas, as well as the underlying striatum, even though moderately (Figure 5a). Pre-ischemic injection of GADD45β−l reduced the infarcted volume by 43% (Figures 5b–d). In fact, the percentage of ischemic volume on the whole rat brain (mean±s.d.) was 7.85±2.03% in the GADD45β−l-treated group (n=6) versus 13.72±4.07% in control rats (n=5) (**P<0.01; Figures 5b–d).
To define the therapeutic window of this inhibitor peptide, we injected GADD45β−l 6 and 12 h after induction of MCAo. Injection of GADD45β−l 6 h post ischemia reduced the infarct volume by 42%, indicating a strong protection and a great potential of GADD45β−l treatment (Figures 5c and d). In this case, the percentage of ischemic volume in GADD45β−l-treated rats injected 6 h post lesion was 8.04±1.04% (n=5) (**P<0.01; Figures 5c and d). On the contrary, the 12-h post-ischemic injection of GADD45β−l did not significantly decrease the infarct volume, indicating the failure of protection at this time point (not shown). Significant reduction in infarct size was maintained 1 week after MCAo, when pre-ischemic administration of GADD45β−I reduced the infarct volume by almost 50% (Figures 5e and f). The percentage of ischemic volume was 6.22±0.98% in the GADD45β−l-treated group (n=5) versus 12.42±2.22% in control rats (n=5) (**P<0.01; Figures 5f–h). Injection of GADD45β−l 6 h post ischemia reduced the infarct volume by 44% (Figures 5e–g). In this case, the percentage of ischemic volume in GADD45β−l treated rats injected 6 h post lesion was 6.95±0.93% (n=5) (**P<0.01; Figures 5g and h).
MKK7-mediated neuroprotection: mechanism of action
To validate the GADD45β−l action mechanism we characterized MKK7 activation, evaluated as P-MKK7/MKK7 ratio, in ischemic tissues from control and GADD45β−l-treated MCAo animals at 3 and 6 h after ischemia. As previously reported, MKK7 phosphorylation increased in the ipsilateral hemisphere after ischemia at 3 and 6 h, suggesting an early activation.4 Treatment with GADD45β−l conferred a 43% protection on infarct size, which correlated with MKK7 inhibition in treated animals compared with MCAo: in fact, rats treated with GADD45β−l showed a 54% reduction of P-MKK7/MKK7 ratio 3 h after ischemia (two-way ANOVA, Tukey's post-hoc test, *P<0.05) (Figure 6a), which persisted 6 h after ischemia (33% reduction of P-MKK7/MKK7 ratio; two-way ANOVA, Tukey's post-hoc test, *P<0.05) (Figure 6b). To clarify the neuroprotective mechanism of GADD45β−l we analyzed the levels of JNK 6 h post ischemia. At 6 h, ischemic injury leads to a pathological activation of JNK, which was reduced by application of GADD45β−l (Figure 6c). To verify the specificity of GADD45β−l for the MKK7-JNK pathway, we also analyzed the phosphorylation level of MKK4: treatment with GADD45β−l induces a modest, but not significant, increase in the basal activity of MKK4 (Figure 6d). These results suggest that GADD45β−l specifically inhibits MKK7 pathway, without blocking MKK4, and this inhibition leads to a significant neuroprotection in vivo, with a temporal intervention window of 6 h after cerebral ischemia.
Thromboembolic ischemia model
To confirm the neuroprotective role of GADD45β−l in vivo, we used a second ischemic model. In this model, the GADD45β−I peptide was injected 30 min before the induction of ischemia. Rats treated with GADD45β−I showed significant improvements of the functional neuroscore 24 h after ischemia compared with the control group. Furthermore, TTC staining showed that rats treated with GADD45β−I peptide (n=3) displayed a significant decrease in the infarct volume compared with control rats at 24 h (n=4) (Figures 7 and b). The total mean infarct volumes were quantified using the Neurolucida software (Microbrightfield, Williston, VT, USA) and Cavalieri's geometry on TTC-stained sections 24 h after thromboembolic occlusion of the MCA (Figures 7a and b). All animals showed an ipsilateral ischemic damage, that is, in the right lateral frontoparietal cortex (Figures 7a and b). Pre-ischemic injection of GADD45β−l reduced the infarcted volume by 50% (Figure 7c). The percentage of ischemic lesion on the whole brain volume was 9.47±1.96% in GADD45β−l-treated rats versus 18.88±4.38% in the control group (**P<0.01) (Figure 7c). These data indicated the powerful neuroprotective effect of GADD45β−l against brain injury induced by thromboembolic ischemia in rats.
Discussion
JNK is a Janus-faced molecule, which may both protect and damage neurons, regulated by the two upstream activators, MKK4 and MKK7, which are not redundant,18, 19 and respond differently to stress stimuli,8, 9, 10 representing a ‘bottleneck' in its activation.
We found that MKK7, and not MKK4, mediates the activation of JNK signaling in excitotoxic neuronal death3 and cerebral ischemia.4 Here we show, for the first time, that MKK7-specific inhibition represents a good strategy to prevent excitotoxic neuronal death and overcome possible side effects occurring in response to JNK inhibition.13
We designed a new MKK7 inhibitor peptide by modeling the minimal region necessary for the binding and coupling it with the TAT peptide, to allow penetration of the blood–brain barrier and neuronal membrane. A spacer was introduced between the TAT and the GADD45β sequences previously discovered.9 This allowed to functionally separate the different domains of GADD45β−I, guaranteeing the entry of the peptide into neurons (TAT sequence), and the ability to interact with MKK7 and inhibit its function (GADD45β sequence). Moreover, the spacer sequence helped in stabilizing the peptide and in increasing its solubility. The introduction of the spacer and the use of the longer sequence, which includes the seven negatively charged residues, increased the efficiency of the inhibitor peptide. In fact, in vitro, GADD45β−I (TAT-spacer-GADD45β60–86) showed a more potent neuroprotective effect against excitotoxicity, if compared with the shorter TAT-GADD45β69–86 peptide. TAT-spacer-GADD45β60–86 peptide completely protected from OGD in vitro, confirming the key role of MKK7 also in this model. All together, the in vitro results obtained with the SPR and the mutated peptide (TAT-GADD45β69–86 CONTROL) demonstrate the selectivity of GADD45β-I peptide for MKK7.
Finally, the peptide showed no toxicity by itself on neurons, suggesting its safety for in vivo treatments. To validate GADD45β-I for clinical applications, we tested it in two in vivo models of cerebral ischemia: the MCAo and the thromboembolic ischemia. Administration of the peptide before the ischemic insult prevented neuronal death, reducing the infarct volume of 43% 24 h after lesion. The neuroprotective effect was maintained also when the peptide was administered 6 h after ischemia, extending its clinical window. Currently, the utilization of tissue plasminogen activator, the only pharmacological treatment approved for ischemic stroke,20 is restricted by the narrow therapeutic window (3–4.5 h) and the limited efficacy, as only a sub-optimal dose (0.9 mg/kg) can be administered, owing to the risk of iatrogenic intracranial hemorrhage21–23, limiting treatment to an estimated 2–5% of ischemic stroke patients in the United States.24 Importantly, also in vivo GADD45β−I inhibited MKK7 activity and its inhibition is in agreement with the protection obtained on infarcted volumes at 24 h as well as at 1 week after lesion. Our protection in vivo lasts at least 1 week, thus suggesting that the effect of treatment is permanent and does not consist in a mere delay in neuronal death. The time course of phosphorylation of MKK7, that is, of its activation, is compatible with the administration time of GADD45β−I, that is, 3–6 h after the lesion. GADD45β−I revealed efficient in reducing the infarct size in both the in vivo models tested. Even though the thromboembolic model resembles the most adherent to human stroke, the MCAo is by and large the most commonly used for testing new drugs against excitotoxicity.
We are aware that notwithstanding the significant results obtained in preclinical studies by blocking specific molecular pathways, their clinical application remains poor25, 26 and no approved therapy exists for stroke other than thrombolysis. This failure in translation from bench to bedside has led to the recommendations on the stroke therapy academic industry roundtable (STAIR),27 even though clinical trials fulfilling the STAIR criteria for EPO or G-CSTS did not confirm preclinical experimentation as well.28 The reasons for this failure are multifarious, ranging from the plurality of mechanisms of cell death,29 the side effects of activity blockade to prevent excitotoxicity and the general conditions of the patient due to comorbidities.
A strategy would be blocking the excitotoxic cascade at the level of the activation of NMDA receptors by glutamate release inhibition, NMDAR antagonists, Na+- or Ca++ channel blockers. All of these had significant effects on neuronal death, but showed remarkable neurological and non-neurological side effects in clinical trials.30 Furthermore, a certain degree of NMDAR activation may be neuroprotective,31 eventually through the activation of the Akt pathway.32 An opposed effect has been shown for phosphatase and tensin homolog deleted on chromosome 10 (PTEN) pathway, which mediates NMDAR-induced death signaling. Its inhibition by a TAT-k13 peptide is neuroprotective against cerebral ischemia.33 No cross-links between the PTEN and the JNK pathways have been described thus far. The major neuroprotective effects both in experimental and in clinical conditions have been obtained with peptides targeting the PSD95-nNOS interaction (NR2B9c) in rodents,34 primates35 and, finally, in clinical trial.35, 36 In fact, the binding of PSD95 to the NMDAR and nNOS brings nNOS into close proximity with the NMDAR channel pore and with the Ca++ that fluxes through the NMDAR, thus activating the enzyme.37, 38
Recently, as an alternative strategy, we found that M5, a mutant of native urokinase plasminogen activator (prouPA), can reduce infarct size with a reduced risk of bleeding.39
In addition, preconditioning stimuli reduce the effects of cerebral ischemia,40 thus suggesting the administration of gaseous carbon monoxide or carbon monoxide donors (CORMs).41 Cell-based therapy has also been proposed to modulate neuroinflammation, replace dying neurons and stimulate brain repair by enhancing neurogenesis and angiogenesis, but it is far from clinical therapy.42
Our inhibitor may represent an important tool to specifically prevent the development of excitotoxicity in neurons, in the absence of side effects and with a very interesting therapeutic window. It might be associated to drugs acting on different pathways of death as well as to increase their efficacy. For example, blocking excitotoxicity could extend the therapeutic window for thrombolysis as well.
The in vivo results support its high therapeutic potential against cerebral ischemia. For the first time, specific inhibition of MKK7 was sufficient to prevent excitotoxicity in vitro as well as cerebral ischemia in two different in vivo models.2, 4, 39 This confirms that excitotoxicity/cerebral ischemia leads to activation of MKK7/JNK pathway, without activating MKK4/JNK. Importantly, GADD45β-I still prevented neuronal death after 1 week from the lesion, proving that the peptide really blocks neuronal death program after lesion and not just postpone it in time.
Compared with D-JNKI1 (specific inhibitor of all JNKs isoforms),2 GADD45β-I reduced the infarct volume by 45%, whereas D-JNKI1 reduced by 93% at the same temporal window (6 h); both peptides block neuronal death. The advantage of inhibiting MKK7 (GADD45β-I), instead of JNK (D-JNKI1), lies in the fact that the JNK physiological role, controlled by MKK4,43 is preserved with GADD45β-I treatment
Conclusions
GADD45β−I is markedly neuroprotective against in-vitro excitotoxicity and OGD in cortical neurons, and more importantly against two experimental stroke models. GADD45β−I specifically decreases MKK7 phosphorylation/activation and reduces the infarct volume by 45–50% at 24 h post lesion, when injected 6 h post ischemia. GADD45β−I (injected 6 h post ischemia) reduces infarct volume by 49% at 1 week after lesion, proving that GADD45β−I is able to inhibit and not just postpone neuronal death after ischemia. We therefore conclude that this agent offers great promise for developing therapies for cerebral ischemia.
Materials and Methods
Modeling and docking design
Up to now the three-dimensional structure of GADD45β is not available and for this reason it has been obtained through homology modeling, using as a template the structure of the GADD45α (Protein Data Bank (PDB) ID: 2KGA)44 sharing 60% of identity with our sequence of interest.14 After the modeling, the structure obtained has been minimized for 1000 step using the Steepest Descent algorithm.45 The atomic coordinates of MKK7 have been solved and are available in the PDB (PDB ID: 2DYL), but the residues composing the three loops, 143–148, 282–296 and 307–314, are lacking. These regions have been modeled using the loops databank of the Swiss PDB viewer Version 4.1 program.46
In order to predict the GADD45β–MKK7 complex, 100 runs of docking using the HADDOCK web server,47 in particular suitable for the protein–protein docking, have been carried out. The results of the docking runs have been clustered based on the RMSD criterion, using a 4.5-Å cutoff. The best GADD45β–MKK7 complex has been chosen by considering the HADDOCK score, which is calculated according to the weighted sum of various energy terms: van der Waals, electrostatic, restraints, diffusion anisotropy, dihedral angle restraints, symmetry restraints, buried surface area, binding and desolvation energies (see the HADDOCK manual for further information47). Docking simulations of the GADD45β–MKK7 have generated 10 families, where the cluster with the best HADDOCK score contains 60% of total complexes generated after the 100 runs. The best structure of this cluster has been selected for the study of the interaction between GADD45β and MKK7 in order to design the peptides.
Peptide synthesis
The synthetic peptides TAT-GADD45β69–86 (aminoacidic sequence: 5′-IALQIHFTLIQSFCCDNDGRKKRRQRRR-NH2-3′) and TAT-spacer-GADD45β60–86 (aminoacidic sequence: 5′-DEEEEDDIALQIHFTLIQSFCCDNDAGAGAAAGRKKRRQRRR-NH2-3′) were prepared by solid-phase peptide synthesis method using a multiple peptide synthesizer (SyroII, MultiSynTech GmbH, Witten, Germany) on 4-(2',4'-dimethoxyphenyl-Fmoc-aminomethyl)-phenoxyacetamido norleucyl-MBHA resin (100–200 mesh) (Novabiochem). The fluoren-9-ylmethoxycarbonyl (Fmoc) strategy48 was used throughout the peptide chain assembly, using O-(7-Azabenzotriazol-1-yl)-N,N,N,N-tetramethyluronium hexafluorophosphate as the coupling reagent.49 The side-chain-protected amino acid building blocks used were as follows: N-α-Fmoc-Nω-(2,2,4,6,7-pentamethyldihydrobenzofuran-5-sulfonyl)-L-arginine, N-α-Fmoc-γ-tert-butyl-L-glutamic acid, N-α-Fmoc-β-tert-butyl-L-aspartic acid, N-α-Fmoc-O-tert-butyl-L-serine, Nα-Fmoc-O-tert-butyl-L-threonine, N-α-Fmoc-Nɛ-(tert-butyloxycarbonyl)-L-lysine, N-α-Fmoc-N(im)-trityl-L-histidine, N-α-Fmoc-N-γ-trityl-L-glutamine, N-α-Fmoc-S-trityl-cystine and N-α-Fmoc-N-β-trityl-L-asparagine. Cleavage of the peptides was performed by reacting the peptidyl resins with a mixture containing TFA/ethanedithiol/phenol 5% for 2.5–3 h. Crude peptides were purified by a preparative reverse-phase HPLC. Molecular masses of the peptides were confirmed by mass spectroscopy on a MALDI TOF–TOF mass spectrometer (model 4800, AB Sciex, Framingham, MA, USA). The purity of the peptides was in the range 90–95% as evaluated by analytical reverse-phase HPLC.
SPR analyses
Binding studies were performed on a ProteOn XPR36 Protein Interaction Array system (Bio-Rad Laboratories, Hercules, CA, USA). Detection of GADD45β69–86 interaction with MKK7 was performed by immobilizing ~5000 resonance units (RUs) of human recombinant full-length MKK7 (residues M1-R419, as in NCBI/Protein entry NP_660186.1; ProQinase GmbH, Freiburg, Germany) on the surface of a sensor chip (GL-C chip, Bio-Rad) by amine-coupling chemistry. GADD45β69–86 molecules were then perfused over the chip for 150 s to allow association, followed by 500 s buffer (PBST) wash to monitor dissociation. Signals were normalized to control channels containing ~5000 RUs of bovine serum albumin or no proteins. The resulting sensorgrams were fitted to a heterogenous ligand binding model using the ProteOn analysis software, to obtain the corresponding association and dissociation rate constants (kon and koff, respectively) and the equilibrium dissociation constant (KD).
Cortical neuronal culture
Cortical pieces were dissected from the brains of 2-day-old rat pups, incubated with 200 U of papain for 30 min at 34 °C and, after trypsin inhibitor (Sigma Aldrich, St Louis, MO, USA) treatment (1%, 45 min at room temperature), were mechanically dissociated. Neurons were then plated at densities of ~5 × 105 cells/plate on 3.5-mm tissue culture dishes (BD, San Jose, CA, USA) and 5 × 104 cells/plate on 95-well culture plates (SPL Life Sciences, Pocheon, South Korea) all pre-coated with 10 μg/ml poly-D-lysine (Sigma Aldrich) and 2 μg/ml laminine (Life Technologies, Gaithersburg, MD, USA). The plating medium consisted of Neurobasal Medium (Life Technologies) supplemented with 2% B27 (Life Technologies), 50 mM glutamine (Life Technologies) and 1000 U/ml penicillin/streptomycin (Life Technologies). Experiments were performed after 11–13 days in culture, at which time the neurons had elaborate axonal and dendritic arbors, and had formed many synapses. GADD45β inhibitors were added to the dishes at the desired concentrations, 30 min before NMDA treatment (100 μM, Abcam, Cambridge, UK).
All experimental procedures on animals were done in accordance with the European Communities Council Directive of 24 November 1986 (86/609/EEC) and all efforts were made to minimize animal suffering.
Oxygen–glucose deprivation
OGD was performed on cortical neurons maintained in an Hypoxia Incubator Chamber (StemCell Technologies, Vancouver, BC, Canada) for 12 h; during the first 4 min, oxygen in the chamber was replaced by a mixture of 95% N2 5% CO2; glucose deprivation was realized by substituting culture medium with glucose-free Neurobasal Medium (Life Technologies).
Peptides administration
All treated rats underwent ICV administration (−1 AP, +2 ML, −3 DV), 30 min before or 6 h post lesion, of GADD45β-I (11 μg/μl) ipsilaterally to the lesion. Animals were anesthetized with isoflurane (4% during induction, then maintained with 1.5%) in a mixture of 30:70 O2/N2O and placed in a Stereotaxic Apparatus (Stoelting, 51600, Wood Dale, IL, USA). Injection (2 μl volume) was made with a graduate glass pipette through an osmotic pump to minimize side effects.
LDH cytotoxicity assay
Neuroprotection was evaluated by an LDH assay. LDH released into the bathing medium 5–24 h after NMDA was measured using the Cytotox 96 non-radioactive cytotoxicity assay kit (Promega, Fitchburg, WI, USA), according to the manufacturer's indications.
Western blot analysis
Proteins were separated by 10% SDS-PAGE and transferred to a PVDF membrane. Incubation with primary antibodies was overnight at 4 °C using the following: 1 : 1000 anti-MKK7 (4172, Cell Signaling Technology, Beverly, MA, USA), 1 : 1000 anti-P-MKK7 (4171, Cell Signaling Technology), 1 : 1000 anti-MKK4 (07-194 Upstate, Charlottesville, VA, USA), 1 : 1000 anti-P-MKK4 (9151, Cell Signaling Technology), 1 : 1000 anti-JNK (9252S, Cell Signaling Technology) and 1 : 1000 anti-P-JNK (9252S, Cell Signaling Technology). All P-antibodies, P-MKK7, P-MKK4 and P-JNK, are specific and recognize only the phosphorylated form of these proteins (they do not recognize cortical neuronal extracts dephosphorylated with alkaline phosphatase overnight). In a single experiment, a very large number of neurons were analyzed, providing very consistent results, and the blots were all normalized with respect to actin (1 : 10 000 anti-actin, 1501 Millipore, Billerica, MA, USA). Blots were developed using horseradish peroxidase-conjugated secondary antibodies (goat anti mouse IgG-HRP and goat anti rabbit IgG-HRP, both from Santa-Cruz Biotechnology, Santa Cruz, CA, USA) and the ECL chemiluminescence system (Promega).
Quantification
The quantification of western blottings was performed using ImageQuant TL software (Amersham Biosciences, Amersham, UK) and was based on at least three independent experiments.
Ischemic models
Ethical statement
Male adult Sprague–Dawley rats (Harlan, Lesmo, Italy) weighing 270–350 g were used in this study. All animal experimental procedures were approved and carried out in accordance to the European Community Council Directive 86/609/EEC (24 November 1986), Italian Ministry of Health and University of Turin institutional guidelines on animal welfare (law 116/92 on Care and Protection of living animals undergoing experimental or other scientific procedures; authorization number 17/2010-B, 30 June 2010) and ad-hoc Ethical Committee of the University of Turin. Free access to food and water was maintained and all efforts were made to minimize suffering and limit the number of animals used.
Part I. Ischemia reperfusion (n=43). The MCA was cauterized by the method described by Renolleau et al.50 Rats were anesthetized with isoflurane (4% during induction, then maintained with 1.5%), in a mixture of 30 : 70 O2/N2O delivered with a face mask throughout the surgery duration. Briefly, under an operating microscope (Nikon, Sesto Fiorentino, Italy), a midline incision of the head was performed, the temporal muscle dissected and the temporal bone exposed; a burr hole was drilled very close to the zygomatic arch and the left MCA was identified. The MCA main branch was then electrocoagulated close to its origin at the junction with the olfactory branch. Thereafter, a median incision was made in the neck to expose the left common carotid artery (CCA), which was transiently occluded by a clip in order to reduce infarct size variability due to anastomoses in the MCA territory. After 90 min, the clip was removed. Successful occlusion was confirmed by progressive whitening of the cortex. Animals were initially killed 24 h post lesion. To further confirm the neuroprotective effect of our MKK7 inhibitor at a chronic condition, the same experimental groups were replicated but the animals were killed 7 days after lesion. In another set of experiments, control (n=3) and treated (n=3) rats were killed 6 h post surgery, to analyze the p-JNK/JNK ratio and MKK7/4 activation by western blotting.
Part II. Thromboembolic ischemia (n=7). Ischemia was induced by injection of autologous blood clots in suspension into the internal carotid artery (ICA), as described by Busch et al.51 In order to prepare blood clots for embolism, femoral arterial blood from a donor rat was collected into a 20-cm long PE-50 catheter and retained for 2 h at room temperature, and subsequently at 4 °C for 22 h to allow clot formation to go to completion. Clots were pushed out of the catheter with a saline-filled syringe, rinsed several times in a Petri dish containing phosphate-buffered solution (PBS, pH 7.4), in order to remove blood cells and obtain a white clot, then inspected under the microscope to select fibrin-rich fragments. These fragments were cut into 2-mm-long pieces and transferred into a solution containing 1 mg/ml albumin in PBS, to allow clot retraction. Approximately 2 h later, 20 fibrin-rich fragments were drawn up in the albumin solution in 1-m-long PE50 catheter, taking care to maintain ~3 cm distance between clots in order to keep them apart, and all embolized into MCA origin.
Surgical procedures
Rats were anesthetized with isoflurane (4% during induction, then maintained with 1.75%), in a mixture of 30 : 70 O2/N2O delivered with a face mask throughout the surgery duration. After a longitudinal incision of 2 cm in length in the midline of the ventral cervical skin, left CCA, ICA and external carotid artery (ECA) were carefully dissected and exposed, avoiding any damage to the adjacent vagus nerve. Inferior thyroid and occipital arteries, branching from the ECA, were visualized and cauterized; the distal portion of ECA was ligated and cut along with the terminal lingual and maxillary artery branches, and the carotid bifurcation identified. ICA was dissected cranially up to the origin of pterygopalatin branch, which was ligated using a 6/0 suture. A 5-0 silk suture was loosely tied around the origin of ECA, and then the CCA and ICA were temporarily clamped using microvascular clips. A PE-50 catheter, containing blood clot suspension, with a modified 0.3-mm outer diameter, was introduced into the ECA stump through a small puncture and advanced 1–2 mm beyond carotid bifurcation; the 5/0 suture was tightened around the catheter to prevent backflow bleeding. The clip around ICA was removed and clots injected within 30 s, whereas CCA was still occluded. At the end of injection, the catheter was withdrawn, the ECA stump was ligated and the CCA clip removed, so that blood pressure could push clots cranially. The wound was then closed; the rat was allowed to completely recover from anesthesia and returned to its cage. The surgery was complete in ~30 min.
Functional neuroscore
Functional outcome was tested at 2 and 24 h by observers blinded to the pharmacological regimen. A 5-point scale described by Longa et al.52 was used (grade 0: no neurological deficit; grade 1: failure to fully extend left forepaw; grade 2: contralateral circling; grade 3: contralateral falling; grade 4: absence of spontaneous movement or unconsciousness). The neuroscore was also used to further confirm that successful thrombotic occlusion had been achieved, as the existence of initial neurological deficit is a reliable predictor for successful occlusion of the MCA;53, 54 only animals grade 1 or higher at 2 h were included in the study. Exclusion of animals took place before assignment into the various treatment groups.
Functional neuroscore was also assessed 7 days after surgery in animals lesioned with MCAo.
Determination of infarct volumes
At 24 h, the animals were euthanized, brains were removed, cooled on ice and then coronally cut into 2-mm-thick sections using a tissue slicer, starting from 2 mm caudal to the frontal tip. Sections were immediately stained with 2% TTC (Sigma) at 37 °C for 10 min, then fixed in 4% phosphate-buffered formalin as previously described.55 Each slice was examined for subarachnoid hemorrhage. Slices were scanned with a Coolpix camera (Nikon); infarct volume and brain edema were measured using NIH ImageJ analysis software (available at http://rsb.info.nih.gov/ij/). Ischemic volumes were calculated as the sum of infarcted area (in mm2) multiplied by slice thickness (~2 mm). Edema volumes were calculated by subtracting the contralateral hemisphere volume from the ischemic hemisphere volume; for edema correction, the equation ischemic volume × contralateral hemisphere/ipsilateral hemisphere volume was used, as previously described.56 Seven 2-mm-thick slices were measured for each brain.
Statistical analysis
Statistical analysis was done using Stat-View software. Data were calculated as mean ±S.E. Differences between groups were compared using Student's t-test or one-way ANOVA and two-way ANOVA, followed by Dunnett's or Tukey's test. P-values <0.05 were considered significant.
Acknowledgments
EB was supported by a Young Investigator Award (GR-2010-2312769) from the Italian Ministry of Health.
Glossary
- JNK
c-Jun-N-terminal kinase
- GADD45β
growth arrest and DNA damage-inducible 45β
- MKK7
mitogen-activated protein kinase kinase 7
- MKK4
mitogen-activated protein kinase kinase 4
- MCAo
middle cerebral artery occlusion
- NMDA
N-methyl-D-aspartate
- OGD
oxygen–glucose deprivation
- SPR
surface plasmon resonance
The authors declare no conflict of interest.
Footnotes
Supplementary Information accompanies this paper on Cell Death and Disease website (http://www.nature.com/cddis)
Edited by A Yaron
Supplementary Material
References
- Lipton SA. Paradigm shift in neuroprotection by NMDA receptor blockade: memantine and beyond. Nat Rev Drug Discov. 2006;5:160–170. doi: 10.1038/nrd1958. [DOI] [PubMed] [Google Scholar]
- Borsello T, Clarke PG, Hirt L, Vercelli A, Repici M, Schorderet DF, et al. A peptide inhibitor of c-Jun N-terminal kinase protects against excitotoxicity and cerebral ischemia. Nat Med. 2003;9:1180–1186. doi: 10.1038/nm911. [DOI] [PubMed] [Google Scholar]
- Centeno C, Repici M, Chatton JY, Riederer BM, Bonny C, Nicod P, et al. Role of the JNK pathway in NMDA-mediated excitotoxicity of cortical neurons. Cell Death Differ. 2007;14:240–253. doi: 10.1038/sj.cdd.4401988. [DOI] [PubMed] [Google Scholar]
- Repici M, Centeno C, Tomasi S, Forloni G, Bonny C, Vercelli A, et al. Time-course of c-Jun N-terminal kinase activation after cerebral ischemia and effect of D-JNKI1 on c-Jun and caspase-3 activation. Neuroscience. 2007;150:40–49. doi: 10.1016/j.neuroscience.2007.08.021. [DOI] [PubMed] [Google Scholar]
- Repici M, Mare L, Colombo A, Ploia C, Sclip A, Bonny C, et al. c-Jun N-terminal kinase binding domain-dependent phosphorylation of mitogen-activated protein kinase kinase 4 and mitogen-activated protein kinase kinase 7 and balancing cross-talk between c-Jun N-terminal kinase and extracellular signal-regulated kinase pathways in cortical neurons. Neuroscience. 2009;159:94–103. doi: 10.1016/j.neuroscience.2008.11.049. [DOI] [PubMed] [Google Scholar]
- Davis RJ. Signal transduction by the JNK group of MAP kinases. Cell. 2000;103:239–252. doi: 10.1016/s0092-8674(00)00116-1. [DOI] [PubMed] [Google Scholar]
- Matsuoka M, Igisu H, Nakagawa K, Katada T, Nishina H. Requirement of MKK4 and MKK7 for CdCl2- or HgCl2-induced activation of c-Jun NH2-terminal kinase in mouse embryonic stem cells. Toxicol Lett. 2004;152:175–181. doi: 10.1016/j.toxlet.2004.04.033. [DOI] [PubMed] [Google Scholar]
- Harper SJ, LoGrasso P. Signalling for survival and death in neurones: the role of stress-activated kinases, JNK and p38. Cell Signal. 2001;13:299–310. doi: 10.1016/s0898-6568(01)00148-6. [DOI] [PubMed] [Google Scholar]
- Papa S, Zazzeroni F, Bubici C, Jayawardena S, Alvarez K, Matsuda S, et al. Gadd45 beta mediates the NF-kappa B suppression of JNK signalling by targeting MKK7/JNKK2. Nat Cell Biol. 2004;6:146–153. doi: 10.1038/ncb1093. [DOI] [PubMed] [Google Scholar]
- Zhou G, Golden T, Aragon, Honkanen RE. Ser/Thr protein phosphatase 5 inactivates hypoxia-induced activation of an apoptosis signal-regulating kinase 1/MKK-4/JNK signaling cascade. J Biol Chem. 2004;279:46595–46605. doi: 10.1074/jbc.M408320200. [DOI] [PubMed] [Google Scholar]
- Borsello T, Croquelois K, Hornung JP, Clarke PG. N-methyl-d-aspartate-triggered neuronal death in organotypic hippocampal cultures is endocytic, autophagic and mediated by the c-Jun N-terminal kinase pathway. Eur J Neurosci. 2003;18:473–485. doi: 10.1046/j.1460-9568.2003.02757.x. [DOI] [PubMed] [Google Scholar]
- Hirt L, Badaut J, Thevenet J, Granziera C, Regli L, Maurer F, et al. D-JNKI1, a cell-penetrating c-Jun-N-terminal kinase inhibitor, protects against cell death in severe cerebral ischemia. Stroke. 2004;35:1738–1743. doi: 10.1161/01.STR.0000131480.03994.b1. [DOI] [PubMed] [Google Scholar]
- Davies C, Tournier C. Exploring the function of the JNK (c-Jun N-terminal kinase) signalling pathway in physiological and pathological processes to design novel therapeutic strategies. Biochem Soc Trans. 2012;40:85–89. doi: 10.1042/BST20110641. [DOI] [PubMed] [Google Scholar]
- Tornatore L, Marasco D, Dathan N, Vitale RM, Benedetti E, Papa S, et al. Gadd45 beta forms a homodimeric complex that binds tightly to MKK7. J Mol Biol. 2008;378:97–111. doi: 10.1016/j.jmb.2008.01.074. [DOI] [PubMed] [Google Scholar]
- Papa S, Monti SM, Vitale RM, Bubici C, Jayawardena S, Alvarez K, et al. Insights into the structural basis of the GADD45beta-mediated inactivation of the JNK kinase, MKK7/JNKK2. J Biol Chem. 2007;282:19029–19041. doi: 10.1074/jbc.M703112200. [DOI] [PubMed] [Google Scholar]
- Tian J, Locker J. Gadd45 in the liver: signal transduction and transcriptional mechanisms. Adv Exp Med Biol. 2013;793:69–80. doi: 10.1007/978-1-4614-8289-5_5. [DOI] [PubMed] [Google Scholar]
- Borsello T, Bonny C. Use of cell-permeable peptides to prevent neuronal degeneration. Trends Mol Med. 2004;10:239–244. doi: 10.1016/j.molmed.2004.03.008. [DOI] [PubMed] [Google Scholar]
- Yamasaki T, Kawasaki H, Arakawa S, Shimizu K, Shimizu S, Reiner O, et al. Stress-activated protein kinase MKK7 regulates axon elongation in the developing cerebral cortex. J Neurosci. 2011;31:16872–16883. doi: 10.1523/JNEUROSCI.1111-11.2011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wang X, Nadarajah B, Robinson AC, McColl BW, Jin JW, Dajas-Bailador F, et al. Targeted deletion of the mitogen-activated protein kinase kinase 4 gene in the nervous system causes severe brain developmental defects and premature death. Mol Cell Biol. 2007;27:7935–7946. doi: 10.1128/MCB.00226-07. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tissue plasminogen activator for acute ischemic stroke. The National Institute of Neurological Disorders and Stroke rt-PA Stroke Study Group. N Engl J Med. 1995;333:1581–1587. doi: 10.1056/NEJM199512143332401. [DOI] [PubMed] [Google Scholar]
- Cronin CA. Intravenous tissue plasminogen activator for stroke: a review of the ECASS III results in relation to prior clinical trials. J Emerg Med. 2010;38:99–105. doi: 10.1016/j.jemermed.2009.08.004. [DOI] [PubMed] [Google Scholar]
- Wang W, Li M, Chen Q, Wang J. Hemorrhagic transformation after tissue plasminogen activator reperfusion therapy for ischemic stroke: mechanisms, models, and biomarkers. Mol Neurobiol. 2014. [DOI] [PMC free article] [PubMed]
- Wardlaw JM, Sandercock PA, Berge E. Thrombolytic therapy with recombinant tissue plasminogen activator for acute ischemic stroke: where do we go from here? A cumulative meta-analysis. Stroke. 2003;34:1437–1442. doi: 10.1161/01.STR.0000072513.72262.7E. [DOI] [PubMed] [Google Scholar]
- Kleindorfer D, Lindsell CJ, Brass L, Koroshetz W, Broderick JP. National US estimates of recombinant tissue plasminogen activator use: ICD-9 codes substantially underestimate. Stroke. 2008;39:924–928. doi: 10.1161/STROKEAHA.107.490375. [DOI] [PubMed] [Google Scholar]
- Stankowski JN, Gupta R. Therapeutic targets for neuroprotection in acute ischemic stroke: lost in translation. Antioxid Redox Signal. 2011;14:1841–1851. doi: 10.1089/ars.2010.3292. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yuan J. Neuroprotective strategies targeting apoptotic and necrotic cell death for stroke. Apoptosis. 2009;14:469–477. doi: 10.1007/s10495-008-0304-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fisher M, Feuerstein G, Howells DW, Hurn PD, Kent TA, Savitz SI, et al. Update of the stroke therapy academic industry roundtable preclinical recommendations. Stroke. 2009;40:2244–2250. doi: 10.1161/STROKEAHA.108.541128. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schmidt A, Minnerup J, Kleinschnitz C. Emerging neuroprotective drugs for the treatment of acute ischaemic stroke. Expert Opin Emerg Drugs. 2013;18:109–120. doi: 10.1517/14728214.2013.790363. [DOI] [PubMed] [Google Scholar]
- Puyal J, Ginet V, Clarke PG. Multiple interacting cell death mechanisms in the mediation of excitotoxicity and ischemic brain damage: a challenge for neuroprotection. Prog Neurobiol. 2013;105:24–48. doi: 10.1016/j.pneurobio.2013.03.002. [DOI] [PubMed] [Google Scholar]
- Lai TW, Zhang S, Wang YT. Excitotoxicity and stroke: identifying novel targets for neuroprotection. Prog Neurobiol. 2014;115:157–188. doi: 10.1016/j.pneurobio.2013.11.006. [DOI] [PubMed] [Google Scholar]
- Chen M, Lu TJ, Chen XJ, Zhou Y, Chen Q, Feng XY, et al. Differential roles of NMDA receptor subtypes in ischemic neuronal cell death and ischemic tolerance. Stroke. 2008;39:3042–3048. doi: 10.1161/STROKEAHA.108.521898. [DOI] [PubMed] [Google Scholar]
- Jo H, Mondal S, Tan D, Nagata E, Takizawa S, Sharma AK, et al. Small molecule-induced cytosolic activation of protein kinase Akt rescues ischemia-elicited neuronal death. Proc Natl Acad Sci USA. 2012;109:10581–10586. doi: 10.1073/pnas.1202810109. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zhang S, Taghibiglou C, Girling K, Dong Z, Lin SZ, Lee W, et al. Critical role of increased PTEN nuclear translocation in excitotoxic and ischemic neuronal injuries. J Neurosci. 2013;33:7997–8008. doi: 10.1523/JNEUROSCI.5661-12.2013. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Aarts M, Liu Y, Liu L, Besshoh S, Arundine M, Gurd JW, et al. Treatment of ischemic brain damage by perturbing NMDA receptor- PSD-95 protein interactions. Science. 2002;298:846–850. doi: 10.1126/science.1072873. [DOI] [PubMed] [Google Scholar]
- Cook DJ, Teves L, Tymianski M. Treatment of stroke with a PSD-95 inhibitor in the gyrencephalic primate brain. Nature. 2012;483:213–217. doi: 10.1038/nature10841. [DOI] [PubMed] [Google Scholar]
- Cook DJ, Teves L, Tymianski M. A translational paradigm for the preclinical evaluation of the stroke neuroprotectant Tat-NR2B9c in gyrencephalic nonhuman primates. Sci Transl Med. 2012;4:154ra133. doi: 10.1126/scitranslmed.3003824. [DOI] [PubMed] [Google Scholar]
- Christopherson KS, Hillier BJ, Lim WA, Bredt DS. PSD-95 assembles a ternary complex with the N-methyl-D-aspartic acid receptor and a bivalent neuronal NO synthase PDZ domain. J Biol Chem. 1999;274:27467–27473. doi: 10.1074/jbc.274.39.27467. [DOI] [PubMed] [Google Scholar]
- Sattler R, Xiong Z, Lu WY, Hafner M, MacDonald JF, Tymianski M. Specific coupling of NMDA receptor activation to nitric oxide neurotoxicity by PSD-95 protein. Science. 1999;284:1845–1848. doi: 10.1126/science.284.5421.1845. [DOI] [PubMed] [Google Scholar]
- Tomasi S, Sarmientos P, Giorda G, Gurewich V, Vercelli A. Mutant prourokinase with adjunctive C1-inhibitor is an effective and safer alternative to tPA in rat stroke. PLoS One. 2011;6:e21999. doi: 10.1371/journal.pone.0021999. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stetler RA, Leak RK, Gan Y, Li P, Zhang F, Hu X, et al. Preconditioning provides neuroprotection in models of CNS disease: paradigms and clinical significance. Prog Neurobiol. 2014;114:58–83. doi: 10.1016/j.pneurobio.2013.11.005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Queiroga CS, Tomasi S, Widerøe M, Alves PM, Vercelli A, Vieira HL. Preconditioning triggered by carbon monoxide (CO) provides neuronal protection following perinatal hypoxia-ischemia. PLoS One. 2012;7:e42632. doi: 10.1371/journal.pone.0042632. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liu X, Ye R, Yan T, Yu SP, Wei L, Xu G, et al. Cell based therapies for ischemic stroke: from basic science to bedside. Prog Neurobiol. 2014;115:92–115. doi: 10.1016/j.pneurobio.2013.11.007. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haeusgen W, Herdegen T, Waetzig V. The bottleneck of JNK signaling: molecular and functional characteristics of MKK4 and MKK7. Eur J Cell Biol. 2011;90:536–544. doi: 10.1016/j.ejcb.2010.11.008. [DOI] [PubMed] [Google Scholar]
- Sanchez R, Pantoja-Uceda D, Prieto J, Diercks T, Marcaida MJ, Montoya G, et al. Solution structure of human growth arrest and DNA damage 45alpha (Gadd45alpha) and its interactions with proliferating cell nuclear antigen (PCNA) and Aurora A kinase. J Biol Chem. 2010;285:22196–22201. doi: 10.1074/jbc.M109.069344. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Evans SE, Williams C, Arthur CJ, Płoskoń E, Wattana-amorn P, Cox RJ, et al. Probing the Interactions of early polyketide intermediates with the Actinorhodin ACP from S. coelicolor A3(2) J Mol Biol. 2009;389:511–528. doi: 10.1016/j.jmb.2009.03.072. [DOI] [PubMed] [Google Scholar]
- Guex N, Peitsch MC. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis. 1997;18:2714–2723. doi: 10.1002/elps.1150181505. [DOI] [PubMed] [Google Scholar]
- de Vries SJ, van Dijk M, Bonvin AM. The HADDOCK web server for data-driven biomolecular docking. Nat Protoc. 2010;5:883–897. doi: 10.1038/nprot.2010.32. [DOI] [PubMed] [Google Scholar]
- Fields GB, Noble RL. Solid phase peptide synthesis utilizing 9-fluorenylmethoxycarbonyl amino acids. Int J Pept Protein Res. 1990;35:161–214. doi: 10.1111/j.1399-3011.1990.tb00939.x. [DOI] [PubMed] [Google Scholar]
- Carpino LA, Henklein P, Foxman BM, Abdelmoty I, Costisella B, Wray V, et al. The solid state and solution structure of HAPyU. J Org Chem. 2001;66:5245–5247. doi: 10.1021/jo001616+. [DOI] [PubMed] [Google Scholar]
- Renolleau S, Aggoun-Zouaoui D, Ben-Ari Y, Charriaut-Marlangue C.A model of transient unilateral focal ischemia with reperfusion in the P7 neonatal rat: morphological changes indicative of apoptosis Stroke 1998291454–1460.discussion 1461. [DOI] [PubMed] [Google Scholar]
- Busch E, Krüger K, Hossmann KA. Improved model of thromboembolic stroke and rt-PA induced reperfusion in the rat. Brain Res. 1997;778:16–24. doi: 10.1016/s0006-8993(97)01008-1. [DOI] [PubMed] [Google Scholar]
- Longa EZ, Weinstein PR, Carlson S, Cummins R. Reversible middle cerebral artery occlusion without craniectomy in rats. Stroke. 1989;20:84–91. doi: 10.1161/01.str.20.1.84. [DOI] [PubMed] [Google Scholar]
- Belayev L, Alonso OF, Busto R, Zhao W, Ginsberg MD.Middle cerebral artery occlusion in the rat by intraluminal suture. Neurological and pathological evaluation of an improved model Stroke 1996271616–1622.discussion 1623. [DOI] [PubMed] [Google Scholar]
- Clark WM, Lessov NS, Dixon MP, Eckenstein F.Monofilament intraluminal middle cerebral artery occlusion in the mouse Neurol Res 199719p641–648. [DOI] [PubMed] [Google Scholar]
- Bederson JB, Pitts LH, Germano SM, Nishimura MC, Davis RL, Bartkowski HM. Evaluation of 2,3,5-triphenyltetrazolium chloride as a stain for detection and quantification of experimental cerebral infarction in rats. Stroke. 1986;17:1304–1308. doi: 10.1161/01.str.17.6.1304. [DOI] [PubMed] [Google Scholar]
- Dohare P, Garg P, Jain V, Nath C, Ray M.Dose dependence and therapeutic window for the neuroprotective effects of curcumin in thromboembolic model of rat Behav Brain Res 2008193p289–297. [DOI] [PubMed] [Google Scholar]
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