. 2015 Jul 20;201(1):229–242. doi: 10.1534/genetics.115.179499

Table 2. The number of incompatibilities based on QTL partitioned to each phylogeny.

	Tree partition
Incompatibility structure	D\|MC	C\|MD	M\|CD
I_AB	—	N_C\|MD + N_D\|MC	N_M\|CD + N_D\|MC
I_AC	N_M_\|_CD + N_D_\|_MC	—	—
I_BC	N_C_\|_MD + N_D_\|_MC	N_M_\|_CD + N_D_\|_MC	N_C_\|_MD + N_D_\|_MC
I_sharedC	N_D_\|_MC	—	—
I_sharedB	—	—	N_D_\|_MC
I_sharedA	—	N_D_\|_MC	—

The number of incompatibilities is calculated based on the number of QTL partitioned to each phylogeny (N with respective partition subscripted). Tree topologies are labeled on the top row with incompatibility structure as depicted in Figure 5 in the left column. Each entry is the total number of incompatibilities for its respective phylogenetic partition. Three measures of incompatibilities can be calculated from our data while three measures are missing for each topology.