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PtrABF, a positive regulator of dehydration tolerance, is involved in stomatal development and regulates polyamine biosynthesis.
Key words: ABRE, antioxidant enzyme, arginine decarboxylase, polyamine, polyamine oxidase, Poncirus trifoliata, ROS, stomatal development.
Abstract
Abscisic acid-responsive element (ABRE)-binding factors (ABFs) play important roles in abiotic stress responses; however, the underlying mechanisms are poorly understood. In this study, it is reported that overexpression of Poncirus trifoliata PtrABF significantly enhanced dehydration tolerance. The transgenic lines displayed smaller stomatal apertures, reduced stomatal density/index, and lower expression levels of genes associated with stomatal development. PtrABF was found to interact with PtrICE1, a homologue of ICE1 (Inducer of CBF Expression 1) that has been shown to be critical for stomatal development. Microarray analysis revealed that a total of 70 genes were differentially expressed in the transgenic line, 42 induced and 28 repressed. At least two units of ABREs and coupling elements were present in the promoters of most of the induced genes, among which peroxidase and arginine decarboxylase were verified as bona fide targets of PtrABF. Transgenic plants exhibited higher antioxidant enzyme activities and free polyamine levels, but lower levels of reactive oxygen species (ROS) and malondialdehyde. Polyamines were revealed to be associated with ROS scavenging in the transgenic plants due to a modulation of antioxidant enzymes triggered by signalling mediated by H2O2 derived from polyamine oxidase (PAO)-mediated catabolism. Taken together, the results indicate that PtrABF functions positively in dehydration tolerance by limiting water loss through its influence on stomatal movement or formation and maintaining ROS homeostasis via modulation of antioxidant enzymes and polyamines through transcriptional regulation of relevant target genes.
Introduction
Plants are frequently challenged by a variety of environmental stresses, of which drought, salt, and cold are major impediments to the devastating impacts on plant growth and development and productivity. Since they are sessile, plants have evolved diverse and sophisticated defence mechanisms to tolerate or avoid such environmental challenges. One such adaptation involves the transcriptional reprogramming of numerous stress-responsive genes, whose products function, directly or indirectly, in preventing stress-derived damage (Shinozaki and Yamaguchi-Shinozaki, 2007; Shi et al., 2015). Recent studies have revealed that many stress-responsive genes act in an abscisic acid (ABA)-dependent manner, implicating ABA as a major factor in the regulation of the complex molecular networks associated with abiotic stress responses (Fujita et al., 2013; Mehrotra et al., 2014). Exposure to abiotic stresses results in the accumulation of endogenous ABA, which in turn triggers the initiation of defence-related signal transduction pathways (Fujita et al., 2013).
Significant progress has been made in identifying key signalling components involved in ABA-mediated gene regulation in response to unfavourable environmental stimuli, as represented by the exploitation of ABA receptors, pyrabactin resistance (PYR)/PYR1-like (PYL)/regulatory component of ABA receptors (RCAR) (Ma et al., 2009; Park et al., 2009). In the presence of ABA, the ABA receptors interact with and inhibit protein phosphatase 2C (PP2C), which serves as a negative regulator of ABA signalling. This leads to the activation of SnRK2 (sucrose non-fermenting 1-related protein kinase 2), which in turn phosphorylates transcription factors (TFs). The activated TFs can thus regulate an array of target genes by interacting with the relevant cis-acting elements in the corresponding promoters (Danquah et al., 2014). Stress tolerance is largely dependent on both the number and induction intensity of the target genes at the bottom tier of the ABA signalosome. In this regard, the activated TFs play a critical and indispensable role in stress tolerance by relaying the upstream signals originating from ABA perception and modulating the downstream target genes. Plant genomes contain a large number of TFs involved in the regulation of the cascade of signalling events, including ABA-responsive element (ABRE)-binding factor (ABF) or AREB (ABRE-binding protein), which acts as master switches in the regulation of stress-responsive genes in the ABA-dependent signalling pathway (Kim, 2006; Fujita et al., 2013; Liu et al., 2014; Yoshida et al., 2015).
ABFs/AREBs, members of the bZIP class of TFs, contain a highly conserved bZIP domain at their C-terminus that is composed of a basic region and a leucine repeat, as well as three additional conserved regions, designated as C1, C2, and C3, at the N terminus. The first characterized group of ABFs (ABF1, ABF2/AREB1, ABF3, and ABF4/AREB2) was isolated from Arabidopsis thaliana using a yeast one-hybrid (Y1H) assay (Choi et al., 2000; Uno et al., 2000; Kim et al., 2004b ). Since then, many stress-responsive ABF genes from other plant species have been reported, including tomato (Yáñez et al., 2009; Hsieh et al., 2010; Orellana et al., 2010), rice (Hossain et al., 2010), potato (Muñiz García et al., 2012), and trifoliate orange (Huang et al., 2010). The functions of several ABFs, and particularly those from A. thaliana, have been well characterized. Numerous studies have demonstrated that the overexpression of ABFs confers enhanced tolerance to single or multiple stresses (Kang et al., 2002; Kim et al., 2004a , b ; Fujita et al., 2005; Oh et al., 2005; Vanjildorj et al., 2005, 2006). These findings, together with the molecular characterization of abf mutants, have established ABFs as key regulators of abiotic stress responses and ABA signalling (Kim et al., 2004a; Fujita et al., 2005; Yoshida et al., 2010, 2015).
ABFs regulate stress-responsive genes by binding to a specific cis-acting element in the promoter regions of target genes, known as the ABRE. Several studies comparing the large-scale transcriptomes between overexpressing lines or mutants and the wild type (WT) have identified sets of genes as potential ABF targets. For example, Oh et al. (2005) identified seven target genes of ABF3 using microarray analyses, while eight genes, including those encoding late embryogenesis abundant (LEA) class proteins and regulatory proteins, have been shown to be direct targets of ABF2 (Fujita et al., 2005). In addition, Yoshida et al. (2010) identified several ABF target genes, including LEA genes, group-Ab PP2C genes, and TFs, through analysis of an areb1 areb2 areb3 triple mutant. Due to the large number of ABA- and stress-responsive genes, it is clear that ABFs regulate a broad range of target genes, many of which are yet to be identified, and so current understanding of the involvement of ABFs in stress tolerance is substantially incomplete.
Previously a homologue of the A. thaliana ABF4, PtrABF, was isolated from trifoliate orange [Poncirus trifoliata (L.) Raf.], and it was demonstrated that its overexpression in tobacco led to enhanced drought tolerance (Huang et al., 2010). However, molecular and physiological mechanisms underlying the observed stress tolerance provided by PtrABF were not fully investigated. In this study, it was therefore sought to identify the target genes of PtrABF and to investigate whether it has additional functions. The involvement of PtrABF in dehydration tolerance was characterized, and it was found that it influenced stomatal aperture and development. Furthermore, it was found that PtrABF physically interacts with PtrICE1, a homologue of ICE1 (Inducer of CBF Expression 1), which is known to control stomatal development (Kanaoka et al., 2008). Microarray analysis revealed that expression levels of 70 genes associated with diverse aspects of stress responses were modified in the transgenic line. A large proportion of the induced genes contained ABREs and coupling elements (CEs) in their promoters, among which peroxidase (POD) and arginine decarboxylase (ADC) were confirmed as two bona fide targets of PtrABF. Meanwhile, the overexpressing lines exhibited higher antioxidant enzyme activities and increased free polyamine content, but had lower levels of reactive oxygen species (ROS) and malondialdehyde (MDA) compared with the WT. Interestingly, treatment of the transgenic plants with d-arginine resulted in elevated ROS levels, while guazatine treatment decreased H2O2 accumulation in response to dehydration. Taken together, the results indicate that overexpression of PtrABF altered stomatal movement and development, and alleviated ROS accumulation by modulating the activity of antioxidant enzymes and levels of free polyamines, factors that all probably contributed to the observed enhanced dehydration tolerance.
Materials and methods
Plant materials
To obtain PtrABF-overexpressing lines, seeds of trifoliate orange were surface-sterilized and sown in germination medium, and maintained at 25±2 °C in the dark for 30 d before being transferred to a 16h photoperiod for a further 7 d. Stem segments were used as explants for transformation of PtrABF (Huang et al., 2010). Transformation, selection, and regeneration of trifoliate orange were carried out as previously described (Fu et al., 2011). Transgenic plants containing the NPTII gene were used as a negative control. For further details of this and the following sections see the Supplementary methods available at JXB online.
Molecular characterization of the regenerated plants
To confirm the presence of the transgene in the putative transgenic plants, genomic PCR analysis was performed using primers NPTII and PtrABF-1 (Supplemenetary Table S1 at JXB online). The transcript levels of PtrABF and NPTII in the positive lines were analysed by quantitative real-time PCR (qPCR) and reverse transcription–PCR (RT–PCR), respectively.
Dehydration treatment of the transgenic lines
For the water loss assay, fully expanded leaves of plants growing under normal conditions were detached, and dehydrated for 90min. The leaves were collected before and/or after dehydration for physiological assays or molecular analysis. In addition, the transgenic lines and WT were pre-treated with d-arginine or guazatine before they were exposed to dehydration, followed by ROS detection or analysis of activity and expression levels of antioxidant enzymes. The dehydration treatment was repeated three times, giving consistent results. One repetition contained three replicates, which was composed of at least seven leaves.
Analysis of electrolyte leakage, cell death, and MDA and ROS accumulation
Electrolyte leakage (EL) was measured as previously described (Shi et al., 2010). Cell death of the leaves was examined by histochemical staining with trypan blue (Pogány et al., 2009). ROS (O2 –, H2O2) and MDA in the dehydrated leaves were histochemically detected or quantitatively measured. In addition, H2O2 in the guard cells was detected by staining assay with H2DCF-DA.
Analysis of stomatal characteristics
Stomatal apertures were examined before and after dehydration using the abaxial epidermis of leaves detached from 6-week-old plants. The stomatal density (the number of stomata per unit of area), stomatal area, and stomatal index (number of stomata/total number of epidermal cells) were determined using leaves collected before the stress treatment. All of the examinations were done using ImageJ software.
Measurement of free polyamines and antioxidant enzyme activities
Extraction of free polyamines was performed based on the method described by Liu and Moriguchi (2007). Free polyamines were derivatized and quantified by high-performance liquid chromatography (HPLC). Antioxidant enzymes were extracted and homogenized in 5ml of extraction buffer containing 50mM phosphate buffer (pH 7.8) and 1% polyvinylpyrrolidone. The enzyme activities were measured using relevant kits according to the manufacturer’s instructions.
Microarray analysis
Leaves harvested from 60-day-old plants growing under normal conditions were used for microarray analysis. The microarray data were processed (Huang et al., 2013) to identify differentially expressed genes (DEGs) in the transgenic line #10. The microarray results were validated by qPCR analysis.
Yeast one-hybrid assay
The promoters of POD (Cit.17340.1.S1_at) and ADC (Cit.17713. 1.S1_s_at), designated as PtrPOD and PtrADC, respectively, were acquired and analysed to identify ABREs and CEs. An effector vector pGADT7-PtrABF and two reporter vectors, pAbAi-pPOD’ (a fragment of the PtrPOD promoter, 161bp) or pAbAi-pADC’ (a fragment of the PtrADC promoter, 214bp), were generated. The Y1H assay was carried out following the manufacturer’s instructions (Clontech, USA).
Transient expression assay
The partial promoter fragments were cloned into the reporter vector pGreenII 0800-LUC, while the full-length open reading frame (ORF) of PtrABF was fused into the pGreen II 62-SK 0029 binary vector to generate an effector. Transient expression assays were carried out using tobacco protoplast transformation.
Yeast two-hybrid assay
A bait vector pDEST32/PtrICE1 (with the GAL4 DNA-binding domain) and a prey vector pDEST22/PtrABF (with the GAL4 activation domain) were constructed The yeast two-hybrid assay was performed using the ProQuest™ Two-Hybrid System following the manufacturer’s protocol (Invitrogen, USA).
Bimolecular fluorescence complementation (BiFC) and subcellular localization assays
The full-length coding sequence of PtrABF was cloned into pSPYCE-35S (PtrABF–cYFP), and PtrICE1 was introduced into pSPYNE-35S (PtrICE1–nYFP). AtbZIP63 was used as a positive control, while PtrICE1–nYFP and cYFP were used as negative controls. Agrobacterium tumefaciens-mediated leaf infiltration was performed according to Walter et al. (2004) with appropriate modification, followed by microscopic observation. Subcellular localization of PtrABF and PtrICE1 was carried out using transient transformation of tobacco leaves.
Statistical analysis
The data were statistically processed using the SAS statistical software package (SAS Institute); statistical difference was compared using ANOVA (analysis of variance) based on Fisher’s LSD test, taking *P<0.05, **P<0.01, and ***P<0.001 as significantly different.
Results
Overexpression of PtrABF in trifoliate orange confers enhanced dehydration tolerance
To verify the role of PtrABF in dehydration tolerance, trifoliate orange transgenic plants were generated via Agrobacterium-mediated transformation of epicotyls using a construct containing the transgene under the control of the Cauliflower mosaic virus (CaMV) 35S promoter. Seven positive transgenic lines were confirmed by genomic PCR analysis (Supplementary Fig. S1a, b at JXB online), and qPCR analysis showed that the transgene was highly overexpressed in two of these lines (#8 and #10) when compared with the WT (Supplementary Fig. S1c). The transgenic plants and WT were indistinguishable in plant morphology under normal growth conditions.
To assess the dehydration tolerance, fully expanded leaves detached from 60-day-old WT and transgenic plants were dehydrated for up to 90min on filter paper under ambient conditions. As seen in Fig. 1a, the treatment resulted in more severe wilting and rolling of WT leaves than those from the transgenic lines. The fresh weight (FW) of the leaves was measured every 15min to evaluate the rate of water loss. Consistent with the phenotype test, the WT leaves lost more water than those from the two transgenic lines during dehydration. In particular, the most significant difference in amount and rate of water loss between the WT and the transgenic lines was detected within 15min of dehydration. At the end of the dehydration treatment, the WT leaves exhibited a water loss of 55.6%, whereas the transgenic leaves lost only 10.9–16.1% of their water (Fig. 1b). EL, a parameter indicating the degree of membrane damage (Huang et al., 2013), was also evaluated in parallel. After 90min of dehydration, EL in the WT (55.9%) was nearly twice that of the two transgenic lines (28.6% for #10, 32.5% for #8) (Fig. 1c). Trypan blue staining, a sensitive assay for monitoring cell death (Pogány et al., 2009), was performed on both WT and transgenic lines after the dehydration. The WT leaves were found to stain much more strongly than leaves from the transgenic lines (Fig. 1d), indicating more cell death in WT leaves. Thus, overexpression of PtrABF in trifoliate orange led to enhanced dehydration tolerance.
As a further control, the dehydration tolerance of WT and transgenic plants containing the neomycin phosphotransferase II gene (NPTII) was also evaluated. Integration and overexpression of the NPTII gene in the transgenic plants were confirmed by genomic PCR and RT–PCR, respectively (Supplementary Fig. S2a, b at JXB online). The WT and negative control plants displayed similar leaf morphology after exposure to dehydration for 90min (Supplementary Fig. S2c). The water loss rate and cell death staining profiles were also indistinguishable between WT and transgenic lines (Supplementary Fig. S2d, e). These data indicate that the presence of the NPTII gene did not alter the dehydration tolerance of the transgenic plants, thus confirming that the improved tolerance of the PtrABF-overexpressing plants was conferred by PtrABF.
Transgenic plants have different stomatal apertures, density, and index
The fact that the transgenic lines overexpressing PtrABF lost less water than WT plants prompted the investigation of whether there was a difference in leaf stomatal apertures, an important determinant of leaf water loss. Without dehydration treatment, the transgenic lines exhibited smaller leaf stomatal openings compared with the WT. Although dehydration treatment led to a noticeable decrease in the stomatal apertures of all tested lines, apertures of the transgenic plants were still smaller than those of the WT (Fig. 2a, b). However, it has to be pointed out that the difference in stomatal apertures between the transgenic lines and the WT is not substantial. In contrast, the transgenic lines and WT displayed much greater gaps in the stomatal density of the leaf epidermis; the mean stomatal density of WT leaves was 1,186mm–2, while that of leaves from #10 and #8 ranged from 375mm–2 to 431mm–2 (Fig. 2c, d). Thus, overexpression of PtrABF led to a prominent reduction in stomatal density, which is consistent with the lower water loss rates observed in the transgenic lines. Stomatal indices of the transgenic lines were significantly lower than that of the WT (Fig. 2e). However, when stomatal area and leaf areas of the tested lines were examined, no remarkable differences were detected (Fig. 2f, g).
Three closely related basic helix–loop–helix (bHLH) genes, SPEECHLESS (SPCH), MUTE, and FAMA, have been reported to act as key regulators of stomatal development (Kanaoka et al., 2008). It was therefore investigated whether the altered stomatal phenotypes of the transgenic plants correlate with differences in expression of these genes. The transcript levels of the homologous genes from trifoliate orange (Supplementary Table S2 at JXB online) were examined by qPCR. As shown in Fig. 3, steady-state mRNA levels of the three genes were shown to be substantially lower in the two transgenic lines relative to the WT.
PtrABF physically interacted with PtrICE1
Recently, the A. thaliana ICE1 gene has been shown to interact with the above-mentioned bHLH genes, thus acting as the central component of the core regulatory unit of stomatal differentiation (Kanaoka et al., 2008). Since PtrABF overexpression reduced stomatal density in the transgenic lines, it was hypothesized that this might involve the interplay between PtrABF and PtrICE1, the P. trifoliata homologue of ICE1. First the subcellular localization of PtrABF and PtrICE1 was analysed using tobacco leaves, which showed that both of them are localized to the nuclei (Supplementary Fig. S3 at JXB online). Then a yeast two-hybrid assay was performed, using PtrABF as prey and PtrICE1 as bait, to test the interaction of these two proteins. The prey and bait vectors were co-transformed into yeast cells, which were cultured on SD/-Leu/-Trp/-Ura or SD/-Leu/-Trp/-His with or without 3-AT (3-amino-1, 2, 4-triazole). All of the yeast cells grew on SD/-Leu/-Trp/-His, but only the positive control and the PtrABF–PtrICE1 co-transformants survived on SD/-Leu/-Trp/-Ura and SD/-Leu/-Trp/-His with the 3-AT supplement. This result was further supported by an X-gal assay, showing interaction between PtrABF and PtrICE1 (Fig. 4a). To verify the interaction between PtrABF and PtrICE1 in planta, a BiFC assay was performed. PtrABF was fused to the C-terminal region of yellow fluorescence protein (YFP) to obtain the PtrABF–cYFP fusion protein, while PtrICE1 was fused to the N-terminal region of YFP to generate PtrICE1–nYFP. Co-transformation of PtrABF–cYFP and PtrICE1–nYFP resulted in fluorescent signals in the cytoplasm of tobacco (Nicotiana benthamiana) leaf epidermal cells (Fig. 4b), confirming a physical interaction between PtrABF and PtrICE1.
The transcriptome of PtrABF-overexpressing lines
To gain insights into the molecular mechanisms underlying the enhanced dehydration tolerance of the transgenic lines and to identify the potential downstream target genes of PtrABF, a genome-wide microarray analysis was performed using the Affymetrix Genechip Citrus Genome Array. RNA samples used as probes for hybridization with the chips were isolated from uniform leaves collected from the WT and transgenic line #10 grown under normal conditions. A total of 70 genes displayed a ≥2.0-fold difference in expression levels (P≤0.05) in the transgenic line when compared with the WT, with 42 and 28 genes showing a higher or lower expression, respectively, in the former (Fig. 5a, b; Supplementary Table S3 at JXB online). Relative expression levels of 10 of the genes that were induced by the microarray data were also quantified by qPCR analysis. The expression patterns indicated by the two approaches were similar, thus validating the reliability of the microarray results. The dehydration treatment induced the expression of the tested genes in both the WT and #10, but higher transcript levels were observed in the latter (Fig. 5c). Gene Ontology (GO) analysis of the DEGs revealed a distribution among various categories, of which ‘cellular process’, ‘binding’, and ‘cell’ were represented most extensively in ‘biological process’, ‘molecular function’, and ‘cellular component’, respectively (Fig. 5d). Of the 42 induced DEGs, 33 were functionally annotated (Table 1). Nine encode TFs of the NAC, WRKY, and bZIP families; seven played a role in mediating stress-associated signal transduction. Ten genes encode proteins associated with oxidative stress, redox modulation, and responses to stimulus and stress, including peroxidase, LEA4-5, and dehydration-induced protein. In addition, five genes are implicated in the metabolism of lipids, polyamines, and glycerol, while two genes are involved in development and transport.
Table 1.
Biology function | Probe set ID | Product description | Fold change | Promoters | ||
---|---|---|---|---|---|---|
Length (bp) | No. of ABREsa | No. of CEs | ||||
Signal transduction | Cit.6937.1.S1_at | Calmodulin binding protein-like | 10.6584 | 1631 | 0 | 0 |
Cit.28233.1.S1 | Calmodulin-binding protein | 9.24319 | 2000 | 1 | 0 | |
Cit.19911.1.S1_s_at | CML23 | 5.98814 | 2058 | 2 | 2 | |
Cit.16885.1.S1_at | CML23 | 5.45979 | 2058 | 2 | 2 | |
Cit.21952.1.S1_at | CES101 | 2.90803 | 1766 | 0 | 0 | |
Cit.18183.1.S1_at | Calmodulin-binding receptor-like cytoplasmic kinase 2, CRCK2 | 2.6287 | 2664 | 2 | 0 | |
Cit.15386.1.S1_at | Signalling in sugar and nutrient physiology, GLR2.7 | 2.46976 | 2000 | 1 | 0 | |
Transcription factors | Cit.12301.1.S1_at | bZIP60 | 2.38001 | 1504 | 2 | 0 |
Cit.22360.1.S1_at | ANAC068 | 2.5932 | 2000 | 1 | 0 | |
Cit.29605.1.S1_at | NAC090 | 12.457 | 2029 | 3 | 1 | |
Cit.29611.1.S1_at | WRKY46 | 5.85275 | 2000 | 1 | 0 | |
Cit.32848.1.S1_at | ANAC087 | 2.43082 | 2075 | 0 | 0 | |
Cit.36234.1.S1_s_at | bZIP60 | 2.84623 | 2058 | 0 | 0 | |
Cit.3757.1.S1_at | WRKY46 | 4.42468 | 2566 | 1 | 1 | |
Cit.37829.1.S1_s_at | NAC090 | 11.7199 | 2029 | 3 | 1 | |
Cit.39642.1.S1_at | WRKY50 | 3.45106 | 2180 | 1 | 4 | |
Oxidative stress and redox regulation | Cit.17340.1.S1_at | Peroxidases | 2.91959 | 2000 | 1 | 2 |
Cit.22418.1.S1_s_at | Redox thioredoxin | 2.39812 | 2132 | 1 | 1 | |
Cit.25134.1.S1_at | Respiratory burst oxidase | 2.22697 | 1328 | 1 | 1 | |
Cit.31330.1.S1_at | Respiratory burst oxidase | 2.97614 | 2000 | 2 | 1 | |
Response to stimulus and stress | Cit.39178.1.S1_s_at | LEA4-5 | 23.4362 | 1578 | 2 | 1 |
Cit.17622.1.S1_at | Cold stress protein | 2.13017 | 2000 | 2 | 1 | |
Cit.14915.1.S1_at | Dehydration-induced protein RD22-like protein 2 | 2.14237 | 2023 | 0 | 0 | |
Cit.22001.1.S1_at | Disease resistance protein (TIR-NBS-LRR class) | 2.43452 | 2000 | 2 | 1 | |
Cit.24055.1.S1_at | PR-proteins | 2.23615 | 878 | 1 | 1 | |
Cit.28635.1.S1_at | Disease resistance protein (TIR-NBS-LRR class) | 3.95718 | 2000 | 2 | 0 | |
Metabolic process | Cit.4457.1.S1_s_at | Lipid metabolism | 6.76488 | 1988 | 2 | 1 |
Cit.17318.1.S1_at | RING/U-box superfamily protein | 3.31257 | 1183 | 2 | 1 | |
Cit.3096.1.S1_s_at | GK-2 | 2.97569 | 2714 | 1 | 1 | |
Cit.14586.1.S1_at | 2-Oxoglutarate and Fe(II)-dependent oxygenase superfamily protein | 2.45955 | 2000 | 3 | 0 | |
Cit.17713.1.S1_s_at | Arginine decarboxylase | 2.17115 | 2503 | 1 | 3 | |
Development | Cit.22036.1.S1_at | Development unspecified | 2.78254 | 2000 | 1 | 1 |
Transport | Cit.39679.1.S1_s_at | UDP-galactose transporter 2,UTR2 | 2.29242 | 2046 | 0 | 1 |
a The number of ABREs (ABA-responsive elements) and CEs (coupling elements) was examined using the promoter region of the relevant genes based on the citrus genome sequence data.
The promoters of the 33 induced and annotated DEGs were screened for the presence of ABREs and CEs based on the released citrus genome sequence (Table 1). The majority contained ABREs and CEs alone, or in combination, although five (Cit.6937.1.S1_at, Cit.21952.1.S1_at, Cit.32848.1.S1_at, Cit.36234.1.S1_s_at, and Cit.14915.1.S1_at) do not. The distribution of ABREs and CEs in the promoters could be classified into three types: 14 genes have at least two ABREs, with or without CEs in their promoters (Type I); nine carry one copy of ABRE and at least one CE (Type II), while the remaining five genes harbour only one ABRE or CE (Type III).
PtrABF interacts with the promoters of PtrPOD and PtrADC
It was noticed that the transcripts of two genes, namely Cit.17340.1.S1_at (PtrPOD) and Cit.17713.1.S1_s_at (PtrADC), were higher in the transgenic line #10 than in the WT, which raised the question of whether they were also induced in both transgenic lines and under dehydration conditions. The mRNA levels of PtrPOD and PtrADC were therefore examined in the two transgenic lines and the WT before and after dehydration. Transcript levels of the two genes in the transgenic lines were higher than in the WT under normal growth conditions. Dehydration for 90min increased their expression levels in both the WT and the transgenic lines; however, the degree of induction in the transgenic lines was more substantial than in the WT (Fig. 6a, b).
In silico analysis showed that the PtrPOD promoter has one ABRE and two CEs, while the PtrADC promoter has one ABRE and three CEs (Fig. 7a). Given that the transcript levels of both PtrPOD and PtrADC were higher in the transgenic lines, it was reasoned that they may be downstream targets of PtrABF. To verify this, the interaction of PtrABF with the PtrPOD and PtrADC promoters was investigated using a Y1H analysis and a transient expression assay. For the Y1H analysis, the PtrABF coding sequence was fused with GAL4 to generate the effector construct, while the promoter fragments of PtrPOD (pPOD’) and PtrADC (pADC’) containing one ABRE and one CE were fused with pAbAi to create the reporter vector (Fig. 7b). The effector and each of the two reporter vectors were co-transformed into the yeast strain Y1HGold, which was spread on SD/-Leu medium or SD/-Leu supplemented with the antibiotic aureobasidin A (AbA). The co-transformant, positive control, and negative control grew well on the SD/-Leu medium, but only the co-transformant and positive control survived on the medium supplemented with AbA (Fig. 7c), suggesting that PtrABF interacted with the promoters of both PtrPOD and PtrADC.
The transient dual expression assay was also performed to verify the Y1H results. A reporter vector was generated by fusing pPOD’ or pADC’ to the N-terminus of the Luciferase gene (LUC), and PtrABF under the control of the CaMV 35S promoter was used as the effector (Fig. 7d). Each of the reporter and the effector vectors was transferred into tobacco protoplasts, and the expression ratio of LUC/REN (Renilla luciferase) was measured and calculated. Compared with the control, co-transformation with the effector (PtrABF) significantly elevated reporter activity (Fig. 7e), indicating that PtrABF can activate these two promoters. When PtrABF was co-transformed with a promoter sequence (m-pADC’) that did not contain an ABRE, the reporter activity was not changed relative to the control, indicating the specificity of promoter activation by PtrABF.
Transgenic plants have higher antioxidant enzyme activities and polyamine levels, but a lower abundance of ROS
Using the transcriptomic data as a guide, the physiological mechanisms underlying the enhanced stress tolerance of the transgenic lines were investigated. Specifically, the activities of antioxidant enzymes, including POD, catalase (CAT), and superoxide dismutase (SOD) were examined, and the levels of polyamines were also measured. POD activity in the transgenic lines was approximately twice that of the WT before and after dehydration (Fig. 8a). The activities of SOD and CAT in the transgenic lines were slightly higher than in the WT without stress treatment, consistent with the expression of the SOD and CAT genes. The dehydration treatment caused an increase in these enzyme activities in both transgenic and WT plants, but the former had significantly higher activity levels (Fig. 8b, c). The levels of three free polyamines, namely putrescine, spermidine, and spermine, were significantly higher in the transgenic lines than in the WT before dehydration (Fig. 8d). Exposure to dehydration conditions for 90min caused minor changes in the levels of free polyamines; however, the transgenic lines still contained higher levels than WT plants.
Since the three antioxidant enzymes (POD, CAT, and SOD) are known to play key roles in ROS scavenging, the accumulation of H2O2 and O2 – in the dehydrated leaves was assessed by histochemical staining using DAB (3,3′-diaminobenzidine) and NBT (nitroblue tetrazolium), respectively. The WT leaves displayed deeper staining than leaves from the transgenic lines (Fig. 8e), indicating that the latter had lower levels of ROS under dehydration. The histochemical analysis was further supported by quantitative measurements of H2O2 and O2 – (Fig. 8f, g). The levels of MDA, a product of lipid peroxidation, in the dehydrated leaves were also measured. Consistent with the observed lower ROS accumulation, MDA levels in the leaves of the two transgenic lines were substantially lower than in the WT after the dehydration treatment (Fig. 8h). Taken together, the results indicate that the transgenic lines have a greater capacity for ROS scavenging and accumulate lower levels of ROS and MDA. However, when the H2O2 level in the guard cells was monitored using H2DCF-DA, a fluorescent dye, no substantial difference was detected between the transgenic lines and the WT (Supplementary Fig. S4 at JXB online).
d-Arginine and guazatine affect ROS accumulation as well as the expression and activity of antioxidant enzymes
It was next investigated whether the elevated polyamine levels might play a role in modulating ROS accumulation in the PtrABF-overexpressing lines. The transgenic lines were pre-treated with different concentrations of d-arginine, an inhibitor of ADC, prior to the dehydration treatment. Compared with control samples treated with water, levels of both H2O2 and O2 – were increased in the d-arginine-treated samples, in a dosage-dependent manner; an observation that was supported by both quantitative measurements and histochemical staining (Fig. 9a–d).
Polyamine catabolism mediated by polyamine oxidase (PAO; EC 1.5.3.3) results in the production of H2O2 (Moschou et al., 2008a , b ; Miller et al., 2010). It was thus asked whether PAO-mediated generation of H2O2 contributed to the ROS accumulation. WT and transgenic lines were treated with guazatine, a PAO inhibitor, prior to dehydration treatment. Both quantitative measurements (Fig. 9e) and histochemical staining (Fig. 9f) demonstrated that H2O2 levels in the WT and transgenic lines pre-treated with guazatine were lower than in the water-treated controls. It was observed that higher concentrations of guazatine led to a more substantial reduction in H2O2 levels. However, the transgenic lines still accumulated less H2O2 relative to the WT. In addition, it was observed that the transcript levels and activities of the antioxidant enzymes SOD, POD, and CAT were reduced in the guazatine-treated samples (Fig. 9g, h), consistent with the changes in H2O2 levels.
Discussion
Over the last decade, significant progress has been made with respect to our understanding of the ABA-mediated signalling network. For example, ABFs are now regarded as key regulators associated with adaptive stress responses, reflecting their role in the transduction of the upstream stress signals to the downstream target genes. Although earlier studies demonstrated that different ABFs may have overlapping functions, each also appears to have a specific role in ABA-mediated signalling in response to abiotic stresses (Yoshida et al., 2010), so specific ABFs may regulate different webs of target genes. Even though the functions of a few ABFs have been extensively studied, the target genes of ABF4 are still poorly characterized so far. Therefore, deciphering target genes of ABFs is of paramount significance to better understand their mode of action in stress response.
In the present study, it is demonstrated that overexpression of PtrABF confers enhanced dehydration tolerance, as shown by reduced water loss and less serious leaf wilting in transgenic plants overexpressing the gene. Plants have developed a variety of mechanisms to achieve dehydration tolerance, some of which involve alterations of stomatal properties, including aperture size and stomatal density. Since transpiration through stomata accounts for the majority of water loss, the regulation of these properties is critical for limiting water loss in response to drought stress (Nilson and Assmann, 2007; Xie et al., 2012). In this study, it was noticed that the stomatal apertures of PtrABF-overexpressing transgenic lines were slightly smaller than those of the WT with or without an exposure to dehydration stress. This finding is congruent with previous studies (Kang et al., 2002; Cominelli et al., 2010) and suggests that enhanced dehydration tolerance of the ABF-overexpressing lines may be partly attributed to reduced stomatal apertures. However, this contribution might be negligible as the difference in stomatal apertures between the WT and transgenic lines was minute when compared with the prominent difference in stomatal density, which was remarkably reduced in the transgenic lines compared with the WT. These data suggest that reduction of the stomatal density might be the major reason why the transgenic lines displayed improved water retention under dehydration stress. In addition, it is tempting to assume that stomatal development rather than physiology was primarily influenced by PtrABF overexpression. PtrABF thus joins the list of genes that have been reported to alter stomatal density, such as MtCAS31 (Xie et al., 2012), WRKY20 (Luo et al., 2013), and AtTRE1 (Van Houtte et al., 2013). It was also noticed that the transgenic lines displayed substantially lower stomatal indices compared with the WT, indicating that fewer pavement cells of the transgenic leaves entered the stomatal development pathway and continued to develop stomata. Stomatal development is regulated by environmental cues, such as light and carbon dioxide levels (Casson and Hetherington, 2010), and significant advances have also been made in our understanding of the transcriptional regulation of stomatal development. Stomata are generated through a series of differentiation events mediated by three closely related bHLH TFs, SPCH, MUTE, and FAMA. These three proteins act as positive regulators controlling entry into the stomatal cell lineage, the transition from a meristemoid to a guard mother cell, and the final differentiation of guard cells, respectively (MacAlister et al., 2007; Pillitteri et al., 2007; Casson and Hetherington, 2010). A recent study demonstrated that ICE1 physically interacts with the three bHLH proteins and is necessary for stomatal differentiation (Kanaoka et al., 2008). In the core regulatory unit, the formation of heterodimers between ICE1 and each of the three bHLH TFs plays a crucial role in specifying the cell state transitional steps of stomatal development. It was shown in this study that PtrABF can physically interact with PtrICE1. However, the interaction between PtrABF and PtrICE1 in the cytoplasm of leaf epidermal cells was unexpected as both of them are TFs. It is assumed that this interaction may possibly prevent movement of PtrICE1 into the nucleus and thus inhibits the generation of biologically functional dimers between PtrICE1 and the three bHLH proteins, leading to a repression of the stomatal lineage. Although more work is required to clarify this, the assumption is in part supported by the decrease in stomatal indices of the transgenic lines. However, whether and how this interaction caused reduction of transcript levels of the bHLH genes in the transgenic lines remained elusive. According to this model, sequential steps of stomatal differentiation in the transgenic plants were impaired, resulting in the observed decrease in stomatal index. This finding provides new insights into the function of an ABF gene in stomatal development, although the underlying mechanisms remain to be determined.
The genome-wide microarray analysis revealed a minor change in the transcriptome of the transgenic line overexpressing PtrABF, with 42 and 28 genes being induced and repressed, respectively. It is worth mentioning that the microarrays did not have probes for the three bHLH genes, namely PtrSPCH, PtrMUTE, and PtrFAMA. As PtrABF has been shown to act as a transactivator, the focus of this study was primarily on the genes that were induced in the transgenic line. A small number of the induced genes encode regulatory proteins, including several TFs, such as NAC, WRKY, and bZIP, which are known to function as regulators of abiotic stress responses (Liu et al., 2014). Moreover, the majority of the DEGs were categorized by GO analysis as functional genes that play roles in defence against abiotic stresses. The induction of these stress-associated functional or regulatory genes may be largely responsible for the improved dehydration tolerance of the transgenic plants.
The microarray analysis also suggested that a number of genes might be directly regulated by PtrABF. In silico analysis revealed that the promoters of 28 induced DEGs contained various combinations of ABREs and CEs. Of these, 23 gene promoters had the Type I and Type II combinations, making them more probable direct targets of PtrABF. This reasoning is dependent upon the notion that a minimal sequence composed of at least two copies of ABREs and CEs is necessary and sufficient to guarantee the transcriptional regulation of an ABF protein and confer ABA response (Choi et al., 2000). The present results concerning the interaction between PtrABF and the promoter fragments containing the minimal sequence provide experimental evidence supporting the regulation of these genes by PtrABF. This regulation may in turn cause the observed increase in transcript levels of the target genes in the transgenic line. Interestingly, it was also found that five annotated DEGs induced in the transgenic line contained neither an ABRE nor a CE, while another five (Type III) had only one ABRE or CE. Based on the prerequisite of a functional minimal sequence, they may be excluded from the group of direct PtrABF targets. One possibility for the observed induction of these genes in the transgenic line is that they are regulated by TFs among the 23 genes with Type I or Type II promoters. Interestingly, the potential targets include a gene in the LEA family that has previously been identified as a possible target of ABF3 and ABF2 (Fujita et al., 2005; Oh et al., 2005), indicating that LEA genes may be regulated by multiple ABFs. The LEAs are hydrophilic proteins that are widely assumed to play critical roles in cellular dehydration tolerance by protein stabilization, enzyme protection, and membrane association and stabilization (Fujita et al., 2005; Olvera-Carrillo et al., 2011). Activation of the LEA gene in this study suggests that maintenance of favourable cell turgidity may also contribute to the enhanced dehydration/drought tolerance in the ABF-overexpressing plants.
The presence of a common set of target genes also supports the previous notion that ABFs have overlapping functions in response to water stress (Yoshida et al., 2010). However, the target genes identified in the present study are largely different from those in earlier studies, and some of the genes identified here have not been previously suggested as potential targets. Two examples are PtrPOD and PtrADC, which have however previously been shown to be involved in stress tolerance responses (Wang et al., 2011; Huang et al., 2013; Shi and Chan, 2014), and identification of these genes as ABF targets expands the regulon of ABFs. This in turn provides valuable clues to elucidate the mechanisms underlying the enhanced stress tolerance in the PtrABF-overexpressing lines. It is also noted that the identification of PtrABF as a positive regulator of PtrADC offers a line of evidence to explain the accumulation of putrescine in many plant species exposed to drought treatments (Liu et al., 2007; Shi and Chan, 2014, and references therein). It is proposed that under drought stress ABA accumulates and triggers the well-known signalling pathway from ABA perception to SnRK activation (Nakashima and Yamaguchi-Shinozaki, 2013; Yoshida et al., 2015). The activated SnRKs then phosphorylate ABF4, which in turn induces ADC, resulting in the production of active enzymes involved in putrescine synthesis.
Exposure to abiotic stresses leads to the elevated generation of ROS, causing oxidative damage to cellular components, which is considered a primary factor in cellular injury in plants (Kasukabe et al., 2004). ROS accumulation is dependent on the balance between scavenging and production. Plants have developed a conserved defence system to maintain ROS homeostasis under unfavourable environmental conditions. For example, antioxidant enzymes play an essential protective role in ROS scavenging (Miller et al., 2010). In this work, transgenic plants had higher activities of three antioxidant enzymes (CAT, POD, and SOD), suggesting that they possess a more efficient enzymatic antioxidant system compared with the WT. As a result, ROS generated in the transgenic plants would probably be scavenged more easily. This conclusion is supported by the substantially reduced levels of H2O2 and O2 – in the transgenic lines under dehydration stress, accompanied by an alleviation of lipid peroxidation (lower MDA content). Taken together, these results indicate that the transgenic plants have a more potent ROS sequestration machinery, allowing them to better withstand ROS-associated oxidative stress. It is proposed that the activation of ROS-scavenging enzymes constitutes an important physiological mechanism underlying the promotion of dehydration tolerance by PtrABF.
Polyamines are low molecular weight aliphatic amines ubiquitously present in living organisms. Being polycationic, polyamines can bind to anionic molecules, such as nucleic acids, proteins, and molecules with phosphate head-groups. This attribute, together with their potential as compatible solutes, underpins their role in combating abiotic stresses through stabilization of cellular membranes and key macromolecules, or mitigation of osmotic stress (Kusano et al., 2008; Minocha et al., 2014; Tiburcio et al., 2014). In this study, the transgenic lines were observed to contain higher levels of polyamines, which may help ameliorate any damage caused by dehydration stress. The present results agree with earlier studies showing that high levels of polyamines correlate with enhanced stress tolerance (Liu et al., 2007; Alcázar et al., 2010; Tiburcio et al., 2014). In contrast, a growing body of evidence demonstrated that polyamines of higher molecular weight, including spermidine and spermine, are subjected to PAO-mediated catabolism when their levels increase beyond a threshold, leading to production of various metabolites and H2O2 (Moschou et al., 2008a , b ; Tiburcio et al., 2014). The PtrABF-overexpressing plants might be expected to reach the threshold value earlier than the WT because they contained higher levels of endogenous polyamines, leading to earlier initiation of PA catabolism in the transgenic lines. At the early stage of stress, PAO-mediated polyamine catabolism possibly resulted in a limited amount of H2O2, which has been suggested to act as a potent signalling molecule at low levels, to orchestrate stress responses by activating downstream defence components (Huang et al., 2005). Since H2O2 has been reported to function as an intermediate in ABA signalling (Zhang et al., 2001; An et al., 2008), polyamines might play an indirect role in ABA-dependent signal transduction associated with stress responses. Accordingly, extensive changes in the transcript levels of ABA-dependent genes have been observed in plants with an altered pool of endogenous polyamines. For instance, transgenic A. thaliana plants overexpressing a spermidine synthase gene from Cucurvita ficifolia display increased expression of a range of ABA-dependent transcription factors and functional proteins (Kasukabe et al., 2004), and putrescine has been shown to interact with ABA-dependent signalling pathways (Cuevas et al., 2008). Therefore, in the current study, the higher polyamine levels in the transgenic plants might modulate the ABA signalling network, which involves a large spectrum of stress-related genes, including antioxidant enzymes (Xian et al., 2014). Polyamines can thus potentially influence enzymatic antioxidant systems through a H2O2-mediated signalling cascade and in turn facilitate ROS elimination. This H2O2-driven signalling may contribute greatly to the induction of SOD and CAT genes, which, even though they were not identified here as PtrABF targets, were prominently induced in the transgenic plants. This hypothesis is in part supported by a decrease in antioxidant enzyme activities and higher ROS production in the tissues treated with guazatine. On the other hand, PtrABF-mediated signalling may intersect with H2O2 signalling to exert a synergistic effect on the antioxidant enzymes. The involvement of polyamines in ROS elimination was further suggested by an experiment where the transgenic plants were treated with d-arginine, thus corroborating several earlier reports on the activation of antioxidant enzymes and the promotion of ROS detoxification by elevating endogenous polyamine contents (Wen et al., 2010; Jang et al., 2012). Collectively, these results indicate that overexpression of PtrABF led to elevated levels of endogenous polyamines, which act either as direct cellular guard metabolites or as substrates for generating H2O2 signalling. However, it is worth mentioning that the H2O2 levels in the guard cells were nearly equivalent between WT and transgenic lines, which suggests that the polyamine-derived H2O2 may play negligible role in stomatal movement or that the transgene effects may be limited to certain tissues.
Increasing the duration and intensity of the dehydration stress resulted in the production of a large amount of H2O2 and other types of ROS in both the transgenic lines and the WT. These in turn served as inducers of oxidative stresses and, consequently, cellular damage, rather than acting as signalling molecules as they did at lower levels. In this study, treatment with an inhibitor of PAO led to a substantial reduction in H2O2 levels at the end of the dehydration treatment, indicating that PAO-mediated H2O2 contributed greatly to the overall ROS homeostasis under dehydration conditions. Several earlier studies demonstrated that PAO activity remains fairly constant irrespective of alterations in the polyamine pool if endogenous PAO is not artificially modified (Moschou et al., 2008a ; Alcázar et al., 2011). It is speculated that large amounts of ROS may be generated by PAO catabolism in the transgenic lines and the WT after exposure to severe dehydration stress. However, as enzymatic antioxidant systems were more highly induced in the transgenic lines than in the WT, ROS produced in the former were more efficiently removed. In contrast, ROS in the WT were not properly quenched, leading to stronger oxidative stress and cell death. These results reinforce the view that elevation of polyamine anabolism, in the presence of constant polyamine catabolism, increases the polyamine anabolism to catabolism ratio and reduces the detrimental effects of ROS, leading to enhanced stress tolerance (Moschou et al., 2008a ; Tiburcio et al., 2014).
In summary, overexpression of PtrABF led to enhanced dehydration tolerance. Based on the data reported here and in earlier studies (Cuevas et al., 2008; Moschou et al., 2008a , b ; Alcázar et al., 2011; Tiburcio et al., 2014), a possible mode of action of PtrABF is suggested (Fig. 10). First, PtrABF stimulates stomatal closure and decreases stomatal density, leading to an alleviation of water loss. Secondly, PtrABF positively regulates the expression of an array of target genes, some of which encode key enzymes involved in antioxidant systems and polyamine synthesis. The products of these genes may function to eliminate ROS at lethal dosages, either directly (antioxidant enzymes) or indirectly (polyamines, serving as a substrate producing a signalling molecule), and act as protective metabolites (polyamines). The results of the current study further the understanding of the physiological and molecular mechanisms underlying ABF-mediated stress tolerance.
Supplementary data
Supplementary data are available at JXB online.
Figure S1. Generation and molecular identification of trifoliate orange transgenic plants overexpressing PtrABF.
Figure S2. Comparison of dehydration tolerance between wild-type and transgenic plants containing the NPTII gene.
Figure S3. Subcellular localization of PtrABF and PtrICE1.
Figure S4. Analysis of H2O2 in guard cells.
Table S1. Primer sequences used for this study.
Table S2. Comparison of stomatal development genes between Poncirus trifoliata and Arabidopsis thaliana.
Table S3. A list of genes repressed in transgenic line #10 overexpressing PtrABF in comparison with the wild type, as revealed by microarray analysis.
Supplementary methods. Detailed methods used for this study.
Acknowledgements
This work was financially supported by the National Science Foundation of China, the Ministry of Agriculture, and the National High Technology Research and Development Program of China (2011AA100205). The authors thank Dr Y.D. Ding for helping to analyse microarray data, Yao Cheng for assistance in the transformation of trifoliate orange, and Dr Z.R. Liu (USDA) and Dr S.Y. Xiao (University of Maryland) for their critical comments on the manuscript.
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