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. Author manuscript; available in PMC: 2016 Nov 1.
Published in final edited form as: Pediatr Blood Cancer. 2015 May 22;62(11):2047–2049. doi: 10.1002/pbc.25587

Severe Combined Immunodeficiency (SCID) Presenting with Neonatal Aplastic Anemia

Angela Scott 1, Jason Glover 2, Suzanne Skoda-Smith 3, Troy Torgerson 4, Min Xu 5, Lauri Burroughs 1, Ann Woolfrey 1, Mark Fleming 6, Akiko Shimamura 1
PMCID: PMC4583355  NIHMSID: NIHMS718373  PMID: 26011426

Abstract

Aplastic anemia in the neonate is rare. We report a case of severe combined immunodeficiency (SCID) presenting with neonatal aplastic anemia. This report highlights the importance of considering SCID early in the evaluation of neonatal aplastic anemia prior to the development of infectious complications.

Keywords: Aplastic anemia, Severe Combined Immunodeficiency (SCID), neonatal

INTRODUCTION

We report the case of an infant presenting with neonatal aplastic anemia. The baby presented at birth with bruising and was noted to have anemia, thrombocytopenia, and intermittent lymphopenia. The patient’s cytopenias progressed and a bone marrow evaluation confirmed severe aplastic anemia. A comprehensive evaluation was diagnostic for SCID. The patient underwent definitive treatment with hematopoietic cell transplantation (HCT).

RESULTS

The patient was born at 39–6/7 weeks gestation after an uncomplicated pregnancy to a 31 year old gravida 3, para 1 mother. Maternal serologies were negative for HIV and hepatitis B surface antigen, rubella-immune and RPR non-reactive. Testing was negative for maternal group B strep. Mother was blood type O positive and the infant was blood type A, Rh positive, antibody screen negative. There was no history of maternal medications, infections, or hypertension.

Physical exam at birth revealed weight 2,650 gm (5th percentile), length 48 cm (15th percentile) and head circumference 32 cm (5th percentile). There was extensive bruising on the scalp, trunk and extremities. No dysmorphologies were noted. The platelet count was 9,000/mm3, hematocrit was 34%, red cell mean corpuscular volume was 132 fL, and absolute lymphocyte count was 1,800/mm3. The initial absolute neutrophil count was 3,712/mm3. A comprehensive infectious evaluation was negative including blood cultures, testing for CMV and EBV, and virology testing on CSF, nasal and rectal samples. She was treated empirically with broad spectrum antibiotics.

She developed progressive anemia and persistent thrombocytopenia requiring regular transfusions (Figure 1A). Neutropenia with an ANC of 320/mm3 developed by day of life 13. The absolute lymphocyte count (ALC) fluctuated between 1,200/mm3 and 2,400/mm3 (Figure 1B). A bone marrow aspirate and biopsy on day of life 13 revealed 10% cellularity with decreased trilineage hematopoiesis without dysplasia or ring sideroblasts (Figures 1C and 1D). CD3 and CD79 stains showed numerous scattered T lymphocytes but fewer number of B lymphocytes. Cytogenetic evaluation and FISH studies for MLL, p53/CEP17 and chromosomes 5q, 7q, 8, 20q were normal.

Figure 1.

Figure 1

Platelet, hematocrit, absolute neutrophil count (ANC) and absolute lymphocyte count (ALC) during the first 100 days of life (A and B). Hypocellular bone marrow biopsy in the proband at (C) low (4X) and (D) high (40X) power magnification.

An evaluation for inherited marrow failure included chromosomal breakage analysis for Fanconi anemia, telomere length assessment for dyskeratosis congenita and mitochondrial DNA deletion and duplication studies for Pearson syndrome, all of which were negative. Genetic testing was negative for dyskeratosis congenita, Shwachman-Diamond Syndrome and Diamond-Blackfan Anemia. After informed consent was obtained on an institutional IRB-approved protocol, the patient’s DNA was analyzed on a targeted gene capture panel followed by next generation sequencing for over 90 genes associated with bone marrow failure, acute myelogenous leukemia and myelodysplastic syndrome but no causative mutations were identified. [1] Genetic evaluation is summarized in Table I.

Table I.

Genetic Evaluation

Dyskeratosis
congenita
Diamond-
Blackfan
anemia
Fanconi
anemia
Congenital
neutropenia
Other
inherited
BMF/MDS
Familial
MDS/
Leukemia
AML and MDS Immunodeficiencies
CTC1 GATA1 FANCA ELANE ABCB7 CBL ABL1 NRAS ADA
DKC1 RPL11 FANCB G6PC3 ANKRD26 CEBPA ASXL1 PML AK2
NHP2 RPL35a FANCC GFI1 ATM ETV6 BCL2L11 PRPF40B DCLRE1C
NOP10 RPL5 BRCA2 (FANCD1) HAX1 ATR GATA2 BCOR RARA IKZF1
RTEL1 RPS10 FANCD2 JAGN1 ATRX PAX5 BCR RPS14 LIG4
TERC RPS17 FANCE TCIRG1 C15ORF41 RUNX1 BRAF SF1 NHEJ1
TERT RPS19 FANCF VPS45 CDAN1 DNMT3A SF3A1 PGM3
TINF2 RPS24 FANCG WAS MPL EZH2 SF3B1 RAC2
WRAP53 RPS26 FANCI NBN FLT3 SRSF2 RAG1
RPS7 BRIP1 (FANCJ) RMRP IDH1 STAG2 RAG2
FANCL SBDS IDH2 TET2
FANCM SRP72 JAK2 TP53
PALB2 (FANCN) KIT U2AF1
RAD51C (FANCO) KRAS U2AF2
SLX4 (FANCP) MET WT1
ERCC4 (FANCQ) MLL ZRSR2
NPM1

At three months of age she was admitted for fever with neutropenia and was empirically started on cefepime. A comprehensive immunologic evaluation was sent. She developed respiratory distress prompting bronchoscopy with bronchoalveolar lavage (BAL) that demonstrated Pneumocystis jiroveci (PJP). She was treated with trimethoprim/sulfamethoxazole and filgrastim with poor neutrophil response. Her course was further complicated by pulmonary aspergillosis requiring antifungal agents and granulocyte transfusions.

Lymphocyte subset analysis revealed an absence of B and NK cells with an absolute CD3 count of 1,366 and a CD4/CD8 ratio of 1.4. Naïve T cells (CD4 CD45 RA+) accounted for 80% of CD4 positive cells. T cell proliferation to phytohemagglutinin (PHA) was profoundly decreased measuring 2% of control. Quantitative immunoglobulins, including IgM, were normal for age. Vaccine response was not assessed. She received replacement immunoglobulin therapy. Adenosine deaminase (ADA) and purine nucleoside phosphorylase (PNP) activity in lymphocytes was normal. A genetic evaluation for immunodeficiencies was negative for pathogenic mutations (Table I). T-cell receptor excision circles were assayed from her saved newborn screen blood spot and were normal. She was diagnosed with a genetically undefined T positive, B negative, NK negative SCID with accompanying severe aplastic anemia. Maternal engraftment was negative as assessed by PCR-amplified fragment length polymorphism analysis of short tandem repeat microsatellite loci (Promega PowerPlex 16, chimerism detection sensitivity 1–5%).

A follow-up bone marrow aspirate demonstrated hypocellular marrow particles. MDS FISH panel was negative for monosomy 5, deletion 5q, monosomy 7, deletion 7q, trisomy 8 and deletion 20q. Due to limited sample, karyotype and flow cytometry could not be performed.

A T-cell replete 10/10 HLA-matched unrelated donor was identified with the goal of achieving rapid immune reconstitution of neutrophils and T-cells given her disseminated aspergillosis infection. She underwent nonmyeloablative conditioning with fludarabine (total dose 90 mg/m2) and 2 Gy TBI at 5 months of age. [2] She rejected the bone marrow graft and underwent a second 10/10 HLA matched unrelated donor peripheral blood stem cell (PBSC) HCT at 7 months of age with reduced-intensity conditioning consisting of fludarabine (total dose 120 mg/m2), cyclophosphamide (total dose 1200 mg/m2) and alemtuzumab (total dose 0.8 mg/kg). [3] She is currently alive and well with full donor engraftment one year following HCT.

DISCUSSION

Aplastic anemia is characterized by multilineage cytopenias resulting from reduced or absent production of blood cells in the bone marrow. [4] Neonatal aplastic anemia is uncommon and necessitates evaluation of acquired and inherited etiologies.

Causes of aplastic anemia include infections, drugs/toxins, myelodysplastic syndromes, paroxysmal nocturnal hemoglobinuria (PNH), inherited marrow failure syndromes and immune disorders. [48] Our patient underwent a comprehensive infectious workup which was negative for both vertically and horizontally transmitted diseases in addition to a thorough maternal medication history which ruled out perinatal toxin exposure. Myelodysplastic syndrome (MDS) in children often presents with hypocellular marrows. [6,7] Our patient’s bone marrow, cytogenetic and genetic evaluations were negative for MDS.

Aplastic anemia can develop in patients with inherited bone marrow failure syndromes including Fanconi Anemia, Dyskeratosis congenita, Shwachman-Diamond Syndrome, and Congenital Amegakaryocytic Thrombocytopenia. [8] Although typically associated with red cell aplasia, Diamond-Blackfan Anemia and Pearson syndrome may present with multi-lineage cytopenias. [9,10] These syndromes are variable in presentation from mild cytopenias to severe pancytopenias, and physical anomalies may be lacking. [8] Our patient had a genetic evaluation which did not identify pathogenic mutations in previously identified genes implicated in bone marrow failure or immunodeficiency.

Immune dysregulation and immunodeficiencies have also been associated with aplastic anemia. [5] Although autoimmune disorders are uncommon in neonates, aplastic anemia in a neonate with lupus erythematous has been reported. [11] Immunodeficiency has been associated with aplastic anemia in patients with several inherited marrow failure syndromes, including Shwachman-Diamond Syndrome, Dyskeratosis congenita and GATA2 mutations. [1214] Mutations in IKZF1 have also been reported to affect both hematopoiesis and immune development. [15] No mutations in known genes causing marrow failure or immunodeficiency were identified so further genetic studies are underway.

Our patient met criteria for a genetically undefined leaky SCID in accordance with recently proposed diagnostic criteria for typical and leaky SCID. [16] Alloreactivity from maternal engraftment has also been implicated in bone marrow aplasia in patients with SCID. [17] Our patient’s peripheral blood chimerism analysis was negative for maternal engraftment. It is possible that our patient harbors a novel genetic mutation associated with both hematopoiesis and immune regulation.

SCID is a life-threatening disease wherein outcomes are improved by early diagnosis and treatment. [1820] Infections are the major cause of morbidity and mortality so timely initiation of prophylactic antimicrobial agents and curative therapy are critical to medical management. This case emphasizes the importance of early consideration of SCID in the differential diagnosis of neonatal aplastic anemia.

Footnotes

Financial disclosures or potential conflicts of interest: None

REFERENCES

  • 1.Zhang MY, Keel SB, Walsh T, Lee MK, Gulsuner S, Watts AC, Pritchard CC, Salipante SJ, Jeng MR, Hofmann I, Williams DA, Fleming MD, Abkowitz JL, King MC, Shimamura A. Genomic analysis of bone marrow failure and myelodysplastic syndromes reveals phenotypic and diagnostic complexity. Haematologica. 2014 doi: 10.3324/haematol.2014.113456. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 2.Burroughs LM, Storb R, Leisenring WM, Pulsipher MA, Loken MR, Torgerson TR, Ochs HD, Woolfrey AE. Intensive postgrafting immune suppression combined with nonmyeloablative conditioning for transplantation of HLA-identical hematopoietic cell grafts: results of a pilot study for treatment of primary immunodeficiency disorders. Bone Marrow Transplant. 2007;40(7):633–642. doi: 10.1038/sj.bmt.1705778. [DOI] [PubMed] [Google Scholar]
  • 3.Marsh JC, Gupta V, Lim Z, Ho AY, Ireland RM, Hayden J, Potter V, Koh MB, Islam MS, Russell N, Marks DI, Mufti GJ, Pagliuca A. Alemtuzumab with fludarabine and cyclophosphamide reduces chronic graft-versus-host disease after allogeneic stem cell transplantation for acquired aplastic anemia. Blood. 2011;118(8):2351–2357. doi: 10.1182/blood-2010-12-327536. [DOI] [PubMed] [Google Scholar]
  • 4.Shimamura A, Nathan DG. Acquired aplastic anemia and pure red cell aplasia. In: Orkin SH, Nathan DG, editors. Nathan and Oski's hematology of infancy and childhood. 7th ed. Philadelphia: Saunders/Elsevier; 2009. pp. 275–306. [Google Scholar]
  • 5.Young NS, Scheinberg P, Calado RT. Aplastic anemia. Curr Opin Hematol. 2008;15(3):162–168. doi: 10.1097/MOH.0b013e3282fa7470. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Niemeyer CM, Baumann I. Classification of childhood aplastic anemia and myelodysplastic syndrome. Hematology Am Soc Hematol Educ Program. 2011;2011:84–89. doi: 10.1182/asheducation-2011.1.84. [DOI] [PubMed] [Google Scholar]
  • 7.Glaubach T, Robinson LJ, Corey SJ. Pediatric myelodysplastic syndromes: they do exist! J Pediatr Hematol Oncol. 2014;36(1):1–7. doi: 10.1097/MPH.0000000000000046. [DOI] [PubMed] [Google Scholar]
  • 8.Shimamura A, Alter BP. Pathophysiology and management of inherited bone marrow failure syndromes. Blood Rev. 2010;24(3):101–122. doi: 10.1016/j.blre.2010.03.002. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Vlachos A, Ball S, Dahl N, Alter BP, Sheth S, Ramenghi U, Meerpohl J, Karlsson S, Liu JM, Leblanc T, Paley C, Kang EM, Leder EJ, Atsidaftos E, Shimamura A, Bessler M, Glader B, Lipton JM. Diagnosing and treating Diamond Blackfan anaemia: results of an international clinical consensus conference. Br J Haematol. 2008;142(6):859–876. doi: 10.1111/j.1365-2141.2008.07269.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Manea EM, Leverger G, Bellmann F, Stanescu PA, Mircea A, Lebre AS, Rotig A, Munnich A. Pearson syndrome in the neonatal period: two case reports and review of the literature. J Pediatr Hematol Oncol. 2009;31(12):947–951. doi: 10.1097/MPH.0b013e3181bbc4ef. [DOI] [PubMed] [Google Scholar]
  • 11.Wolach B, Choc L, Pomeranz A, Ben Ari Y, Douer D, Metzker A. Aplastic anemia in neonatal lupus erythematosus. Am J Dis Child. 1993;147(9):941–944. doi: 10.1001/archpedi.1993.02160330031012. [DOI] [PubMed] [Google Scholar]
  • 12.Spinner MA, Sanchez LA, Hsu AP, Shaw PA, Zerbe CS, Calvo KR, Arthur DC, Gu W, Gould CM, Brewer CC, Cowen EW, Freeman AF, Olivier KN, Uzel G, Zelazny AM, Daub JR, Spalding CD, Claypool RJ, Giri NK, Alter BP, Mace EM, Orange JS, Cuellar-Rodriguez J, Hickstein DD, Holland SM. GATA2 deficiency: a protean disorder of hematopoiesis, lymphatics, and immunity. Blood. 2014;123(6):809–821. doi: 10.1182/blood-2013-07-515528. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Allenspach EJ, Bellodi C, Jeong D, Kopmar N, Nakamura T, Ochs HD, Ruggero D, Skoda-Smith S, Shimamura A, Torgerson TR. Common variable immunodeficiency as the initial presentation of dyskeratosis congenita. J Allergy Clin Immunol. 2013;132(1):223–226. doi: 10.1016/j.jaci.2012.11.052. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Khan S, Hinks J, Shorto J, Schwarz MJ, Sewell WA. Some cases of common variable immunodeficiency may be due to a mutation in the SBDS gene of Shwachman-Diamond syndrome. Clin Exp Immunol. 2008;151(3):448–454. doi: 10.1111/j.1365-2249.2007.03556.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Goldman FD, Gurel Z, Al-Zubeidi D, Fried AJ, Icardi M, Song C, Dovat S. Congenital pancytopenia and absence of B lymphocytes in a neonate with a mutation in the Ikaros gene. Pediatr Blood Cancer. 2012;58(4):591–597. doi: 10.1002/pbc.23160. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.Shearer WT, Dunn E, Notarangelo LD, Dvorak CC, Puck JM, Logan BR, Griffith LM, Kohn DB, O'Reilly RJ, Fleisher TA, Pai SY, Martinez CA, Buckley RH, Cowan MJ. Establishing diagnostic criteria for severe combined immunodeficiency disease (SCID), leaky SCID, and Omenn syndrome: the Primary Immune Deficiency Treatment Consortium experience. J Allergy Clin Immunol. 2014;133(4):1092–1098. doi: 10.1016/j.jaci.2013.09.044. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Schumacher RF, Notarangelo LD. Severe combined immunodeficiencies of the common gamma-chain/JAK3 signaling pathway. Isr Med Assoc J. 2002;4(2):131–135. [PubMed] [Google Scholar]
  • 18.Myers LA, Patel DD, Puck JM, Buckley RH. Hematopoietic stem cell transplantation for severe combined immunodeficiency in the neonatal period leads to superior thymic output and improved survival. Blood. 2002;99(3):872–878. doi: 10.1182/blood.v99.3.872. [DOI] [PubMed] [Google Scholar]
  • 19.Pai SY, Logan BR, Griffith LM, Buckley RH, Parrott RE, Dvorak CC, Kapoor N, Hanson IC, Filipovich AH, Jyonouchi S, Sullivan KE, Small TN, Burroughs L, Skoda-Smith S, Haight AE, Grizzle A, Pulsipher MA, Chan KW, Fuleihan RL, Haddad E, Loechelt B, Aquino VM, Gillio A, Davis J, Knutsen A, Smith AR, Moore TB, Schroeder ML, Goldman FD, Connelly JA, Porteus MH, Xiang Q, Shearer WT, Fleisher TA, Kohn DB, Puck JM, Notarangelo LD, Cowan MJ, O'Reilly RJ. Transplantation outcomes for severe combined immunodeficiency, 2000–2009. N Engl J Med. 2014;371(5):434–446. doi: 10.1056/NEJMoa1401177. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20.Brown L, Xu-Bayford J, Allwood Z, Slatter M, Cant A, Davies EG, Veys P, Gennery AR, Gaspar HB. Neonatal diagnosis of severe combined immunodeficiency leads to significantly improved survival outcome: the case for newborn screening. Blood. 2011;117(11):3243–3246. doi: 10.1182/blood-2010-08-300384. [DOI] [PubMed] [Google Scholar]

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