Table I.
Light chain genes in the nurse shark
| L chain genea | Number | Organization | Subtypesa | |
|---|---|---|---|---|
| Kappa (NS4) | ~39 | GL-joined | 6 clusters: VkR4, VkR7, VkR18, VkRE18; psVkR6b, psVkR19b, [VkR20] | |
| Split | 33 clusters: ≤ 63% functionalc | |||
| Lambda (NS3) | 6 | GL-joined | 5 clusters: NS3-12, −23, −46, −17b, −56Ab | |
| GL-joined | 1 cluster: NS3-8 | |||
| Sigma-2 (NS5) | 4 | GL-joined | 1 cluster: NS5-16 | |
| Split | 3 clusters: NS5-2, −48, −37b | |||
| Sigma | 2 | Split | 2 clusters | |
| All L chains | ~51 | GL-joined | 13 clusters: 9 functional (4 kappa) | |
| Split | ~38 clusters: ~25 functional (21 kappa) |
Six GL-joined kappa genes were described in ref. 26 (called R4, R7, R18, RE18, R6, R19), allelic relationship unknown. VkR20 was recently isolated (A. Lui and E. Hsu, unpub. results). Other germline L chain genes were reported in refs. 22, 38, 51. Their earlier names are in parentheses. The subtypes differ from each other either by organization (GL-joined or split) or sequence (NS3-8 and NS3-12 are different by 33% in V and 23% in C).
Pseudogene
Of 24 unique split VL genes isolated from shark-Y bacteriophage and BAC libraries, nine genes had defective VL gene segments.