Table 3.
Family-level percent bacterial composition for each of the 14 stool samples examined in this study
| Confirmed samples b | Non-confirmed samplesb | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Phylum | Family | CDC68129 | CDC68058 | CDC69068 | CDC68083 | CDC68116 | CDC68192 | CDC68090 | CDC68126 | CDC68053 | CDC69114 | CDC68112 | CDC68122 | CDC69062 | CDC69078 |
| Actinobacteria | Actinomycetaceae | 0.0 % | 0.0 % | 0.1 % | 0.0 % | 1.0 % | 2.4 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.4 % | 0.0 % | 0.0 % |
| Bifidobacteriaceae | 6.1 % | 0.0 % | 24.6 % | 4.6 % | 0.0 % | 0.0 % | 51.9 % | 53.5 % | 0.0 % | 0.0 % | 19.3 % | 0.0 % | 6.7 % | 48.2 % | |
| Coriobacteriaceae | 1.2 % | 0.0 % | 5.4 % | 0.2 % | 0.1 % | 1.6 % | 0.0 % | 0.0 % | 0.0 % | 12.7 % | 0.0 % | 0.0 % | 0.5 % | 0.8 % | |
| Bacteroidetes | Bacteroidaceae | 0.0 % | 0.0 % | 0.1 % | 21.4 % | 0.3 % | 0.0 % | 0.0 % | 20.5 % | 0.0 % | 0.3 % | 0.0 % | 0.0 % | 0.0 % | 1.4 % |
| Rikenellaceae | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 4.2 % | |
| Sphingobacteriaceae | 0.0 % | 0.0 % | 0.0 % | 15.7 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | |
| Firmicutes | Paenibacillaceae | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 3.7 % | 0.0 % |
| Planococcaceae | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 21.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 40.2 % | 0.0 % | |
| Enterococcaceae | 22.3 % | 20.4 % | 14.8 % | 19.2 % | 0.9 % | 42.8 % | 7.1 % | 0.4 % | 0.0 % | 10.0 % | 72.9 % | 8.9 % | 34.0 % | 0.1 % | |
| Lactobacillaceae | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.3 % | 1.3 % | 0.0 % | 0.0 % | 31.4 % | 0.0 % | 0.6 % | 69.6 % | 0.0 % | 0.0 % | |
| Clostridiaceae | 3.5 % | 0.1 % | 0.3 % | 0.1 % | 0.1 % | 11.9 % | 4.1 % | 0.2 % | 0.0 % | 35.1 % | 0.0 % | 4.4 % | 0.5 % | 0.8 % | |
| ClostridialesFamilyXI | 0.0 % | 0.0 % | 3.2 % | 0.0 % | 0.2 % | 0.4 % | 0.2 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 12.1 % | 0.0 % | |
| Lachnospiraceae | 0.2 % | 0.0 % | 0.0 % | 0.2 % | 0.1 % | 23.0 % | 0.0 % | 0.8 % | 0.0 % | 1.1 % | 0.0 % | 8.3 % | 1.1 % | 36.1 % | |
| Ruminococcaceae | 1.3 % | 0.0 % | 0.0 % | 0.4 % | 0.1 % | 0.2 % | 0.0 % | 0.2 % | 0.0 % | 0.2 % | 0.0 % | 0.0 % | 0.5 % | 3.5 % | |
| Proteobacteria | Sphingomonadaceae | 0.0 % | 0.0 % | 0.0 % | 2.7 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % |
| Comamonadaceae | 0.0 % | 0.0 % | 0.0 % | 18.4 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.2 % | 0.0 % | 0.0 % | |
| Desulfovibrionaceae | 0.0 % | 0.0 % | 0.0 % | 4.1 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | |
| Enterobacteriaceae | 65.2 % | 78.7 % | 51.1 % | 9.1 % | 96.3 % | 15.7 % | 14.4 % | 21.5 % | 0.1 % | 40.0 % | 2.7 % | 6.9 % | 0.0 % | 0.8 % | |
| Pseudomonadaceae | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 68.1 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | 0.0 % | |
| Tenericutes | Erysipelotrichaceae | 0.0 % | 0.1 % | 0.0 % | 1.5 % | 0.1 % | 0.0 % | 0.0 % | 2.6 % | 0.0 % | 0.3 % | 0.0 % | 0.0 % | 0.0 % | 1.5 % |
| Othera | 0.1 % | 0.7 % | 0.5 % | 2.4 % | 0.5 % | 0.8 % | 1.2 % | 0.2 % | 0.4 % | 0.3 % | 4.3 % | 1.2 % | 0.7 % | 2.6 % | |
aIncludes family-level taxa that were either unassigned or represented <1.0 % abundance in each of the 14 samples
bHighest percent abundance in each column recorded in bold