Table 2b. List of the 21 shared genes overexpressed in Cs and Ps, both LT and ST, vs healthy white matter.
| Overexpressed | Log2FC vs ctr | ||||
|---|---|---|---|---|---|
| STC | STP | LTC | LTP | ||
| ARC | activity-regulated cytoskeleton-associated protein | 4.157 | 3.192 | 4.827 | 4.016 |
| COL4A1 | collagen, type IV, alpha 1 | 5.249 | 4.473 | 4.932 | 4.812 |
| COL4A2 | collagen, type IV, alpha 2 | 4.948 | 3.949 | 5.033 | 4.814 |
| CXCL14 | chemokine (C-X-C motif) ligand 14 | 4.467 | 2.880 | 4.110 | 4.104 |
| EPHA4 | EPH receptor A4 | 4.964 | 3.601 | 5.385 | 4.114 |
| IDUA | iduronidase, alpha-L- | 7.250 | 6.714 | 7.389 | 6.538 |
| LMTK3 | lemur tyrosine kinase 3 | 4.578 | 3.627 | 4.339 | 3.566 |
| LOC100126784 | hypothetical LOC100126784 | 3.687 | 2.720 | 3.282 | 2.817 |
| LOC389831 | hypothetical gene supported by AL713796 | 4.506 | 3.902 | 4.616 | 4.878 |
| LPHN2 | latrophilin 2 | 4.122 | 3.946 | 4.869 | 3.228 |
| LRRC55 | leucine rich repeat containing 55 | 2.891 | 2.839 | 2.780 | 3.005 |
| LSM6 | LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) | 5.128 | 4.788 | 5.323 | 5.102 |
| METTL7B | methyltransferase like 7B | 4.134 | 4.393 | 5.044 | 5.994 |
| NID1 | nidogen 1 | 3.646 | 2.987 | 3.540 | 2.685 |
| PGM2L1 | phosphoglucomutase 2-like 1 | 4.576 | 2.714 | 5.110 | 3.386 |
| RGS12 | regulator of G-protein signaling 12 | 4.506 | 3.871 | 4.941 | 4.695 |
| SLCO2A1 | solute carrier organic anion transporter family, member 2A1 | 5.916 | 5.189 | 5.598 | 5.205 |
| SOCS2 | suppressor of cytokine signaling 2 | 3.055 | 2.849 | 3.066 | 2.571 |
| STAC2 | SH3 and cysteine rich domain 2 | 6.034 | 3.353 | 5.606 | 3.102 |
| TGFBI | transforming growth factor, beta-induced, 68 kDa | 5.086 | 3.488 | 3.709 | 3.705 |
| TOP2A | topoisomerase (DNA) II alpha 170 kDa | 6.766 | 5.940 | 5.572 | 5.473 |
The last four columns show the Log2FC of STC, STP, LTC and LTP, respectively, vs healthy white matter