Abstract
Sphingolipids have essential structural and bioactive functions in membranes and in signaling. However, how plants regulate sphingolipid biosynthesis in the response to stress remains unclear. Here, we reveal that the plant hormone ethylene can modulate sphingolipid synthesis. The fungal toxin Fumonisin B1 (FB1) inhibits the activity of ceramide synthases, perturbing sphingolipid homeostasis, and thus inducing cell death. We used FB1 to test the role of ethylene signaling in sphingolipid synthesis in Arabidopsis thaliana. The etr1-1 and ein2 mutants, which have disrupted ethylene signaling, exhibited hypersensitivity to FB1; by contrast, the eto1-1 and ctr1-1 mutants, which have enhanced ethylene signaling, exhibited increased tolerance to FB1. Gene expression analysis showed that during FB1 treatment, transcripts of genes involved in de novo sphingolipid biosynthesis were down-regulated in ctr1-1 mutants but up-regulated in ein2 mutants. Strikingly, under normal conditions, ctr1-1 mutants contained less ceramides and hydroxyceramides, compared with wild type. After FB1 treatment, ctr1-1 and ein2 mutants showed a significant improvement in sphingolipid contents, except the ctr1-1 mutants showed little change in hydroxyceramide levels. Treatment of wild-type seedlings with the ethylene precursor 1-aminocyclopropane carboxylic acid down-regulated genes involved in the sphingolipid de novo biosynthesis pathway, thus reducing sphingolipid contents and partially rescuing FB1-induced cell death. Taking these results together, we propose that ethylene modulates sphingolipids by regulating the expression of genes related to the de novo biosynthesis of sphingolipids.
Keywords: sphingolipids, ethylene, fumonisin B1, Arabidopsis, 1-aminocyclopropane carboxylic acid
Introduction
Sphingolipids, the complex membrane lipids found ubiquitously in eukaryotes, have important functions in nutrient transport, inflammation, cell differentiation, mitogenesis, migration, apoptosis, senescence, and autophagy (Guenther et al., 2008; Hannun and Obeid, 2008; Hla and Dannenberg, 2012; Sentelle et al., 2012; Maceyka and Spiegel, 2014). A sphingolipid has three parts: a long chain base moiety, a fatty acid moiety, and a head group (Sperling and Heinz, 2003; Pata et al., 2010). According to their molecular structures, plant sphingolipids can be divided into four classes: long-chain bases (LCBs), ceramides, glycosylceramides, and glycosyl inositol phosphoceramides (GIPCs; Pata et al., 2010).
The de novo synthesis of sphingolipids starts from a condensation reaction of serine and palmitoyl-CoA by serine palmitoyltransferase (SPT). The resulting 3-keto-dihydrosphingosine is then reduced to a LCB, which forms the backbone of sphingolipids. LCBs can be acylated with various fatty acids, forming dihydroceramides in a reaction catalyzed by ceramide synthases. Ceramides desaturated from dihydroceramides can be modified to complex sphingolipids such as glycosylceramides (GIPCs) or phosphorylated to ceramide phosphates (Hannun and Obeid, 2008; Pata et al., 2010). In the past two decades, research has characterized many of the genes involved in sphingolipid metabolism in plants. SPT, the rate-limiting enzyme of de novo sphingolipid synthesis (Tamura et al., 2001), has two subunits (LCB1 and LCB2a, LCB2b), and loss-of-function of either subunit in Arabidopsis resulted in lethality (Chen et al., 2006; Dietrich et al., 2008; Teng et al., 2008). LCBs derived from sphinganine (d18:0) can be modified by three enzymes: LCB C-4 hydroxylase, LCB Δ8 desaturase, and LCB Δ4 desaturase (Chen et al., 2008, 2012; Michaelson et al., 2009). LCB kinases phosphorylate LCBs into LCB-1-Ps and four genes (LCBK1, LCBK2, SPHK1, and SPHK2) encode these enzymes. LCB-1-Ps participate in abscisic acid signaling (Imai and Nishiura, 2005; Worrall et al., 2008; Dutilleul et al., 2012; Guo et al., 2012). LCB-1-P phosphatases and LCB-1-P lyase dephosphorylate LCB-1-P and affect the dehydration response in Arabidopsis (Tsegaye et al., 2007; Nishikawa et al., 2008; Nakagawa et al., 2012). Ceramide synthases encoded by three genes can be divided into two groups based on their substrate preferences: one group includes LOH2, which prefers acyl-CoAs with 16 carbon chain lengths; the other group includes LOH1 and LOH3, which have a wide range of acyl-CoAs as substrates (Markham et al., 2011; Ternes et al., 2011). Loss of the ceramide kinase ACD5 causes the accumulation of ceramides and salicylic acid and impairs plant defenses (Greenberg et al., 2000; Liang et al., 2003; Bi et al., 2014). Inositolphosphorylceramide synthase (IPCS) is involved in RPW8-mediated hypersensitive response-like cell death (Wang et al., 2008). Loss of sphingolipid fatty acid a-hydroxylases results in abnormal plant development and increased sensitivity to oxidative stress (Konig et al., 2012; Nagano et al., 2012). A rice neutral ceramidase prefers ceramides as its substrates (Pata et al., 2008), but the Arabidopsis neutral ceramidase AtNCER1 prefers hydroxyceramides and affects oxidative stress (Li et al., 2015). We also reported that the Arabidopsis alkaline ceramidase AtACER functions in disease resistance and salt tolerance (Wu et al., 2015). Plants deficient in AtACER accumulate ceramides and have reduced levels of LCBs, indicating that AtACER is an important regulator of sphingolipid homeostasis (Wu et al., 2015). Although many studies have expanded our understanding of sphingolipids, little is known about how plants regulate sphingolipid metabolism.
Ethylene, a gaseous plant hormone, functions in plant development and stress responses, can be produced by stressed or senescing plants, and affects other plants in the vicinity (Bleecker and Kende, 2000). The ethylene signal transduction pathway has been described in detail (Qiao et al., 2012; Wen et al., 2012; Merchante et al., 2013). Briefly, in the absence of ethylene, the redundant ethylene receptors ETR1, ERS1, ETR2, ERS2, and EIN4 activate the CTR1 protein kinase, which phosphorylates EIN2, inhibiting downstream signaling (Hua and Meyerowitz, 1998; Ju et al., 2012; Qiao et al., 2012; Wen et al., 2012). In the presence of ethylene, the receptors bind ethylene and lose activity, switching off CTR1. Then, the C-terminal of EIN2 is cleaved and transported into the nucleus where it stabilizes the transcription factors EIN3 and EIL1, resulting in the expression of ethylene-responsive genes (Ju et al., 2012; Qiao et al., 2012; Wen et al., 2012).
The fungal toxin Fumonisin B1 (FB1) inhibits the activity of ceramide synthases, resulting in a dramatic increase in the amount of LCBs and ceramides (Abbas et al., 1994; Stone et al., 2000; Markham et al., 2011). Plants treated with FB1 showed hypersensitive response phenotypes, including generation of reactive oxygen species, deposition of phenolic compounds and callose, accumulation of phytoalexins, and expression of pathogenesis-related (PR) genes (Stone et al., 2000). FB1-induced cell death in Arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways (Asai et al., 2000). Ethylene receptors have distinct roles in FB1-induced cell death in Arabidopsis. The etr1-1 mutant was more sensitive to FB1 than wild-type plants, but the ein4-1 mutant was more tolerant to FB1, and mutants of the other receptor isoforms showed similar responses to FB1 as wild-type plants (Plett et al., 2009). Gene expression analysis revealed that transcripts of ETR1 and ETHYLENE RESPONSE FACTOR1 (ERF1) increased dramatically in ein4-1 mutants after FB1 treatment, indicating that ETR1 plays a negative role in FB1-induced cell death (Plett et al., 2009). Recently, another group reported that etr1-1 mutants were more resistant to FB1, compared with wild-type plants (Mase et al., 2013). The role of ethylene signaling in FB1-induced cell death thus remains to be elucidated.
Previous studies revealed that ethylene regulates the biosynthesis of secondary metabolites such as indole-3-acetic acid, ascorbic acid, flavonoid, and others (Buer et al., 2006; Ruzicka et al., 2007; Gergoff et al., 2010). However, the effects of ethylene on lipid biosynthesis have remained unclear. Here, we report that ethylene modulates sphingolipid synthesis. Our results showed that ethylene signaling plays a negative role in FB1-induced cell death and down-regulates the expression of genes involved in de novo sphingolipid biosynthesis, thereby reducing sphingolipid synthesis.
Materials and Methods
Plant Materials and Growth Conditions
The etr1-1 (CS237), ein2 (CS8844), ctr1-1(CS8057), eto1-1 (CS3072), and acer-1 (CS876510, Wu et al., 2015) mutants were obtained from the Arabidopsis Biological Resource Center (ABRC); the double mutant ctr1 ein2 was a gift from Dr. Chi-Kuang Wen. All the mutants used in this study were in the Arabidopsis thaliana ecotype Columbia (Col-0), which was used as the wild-type control. FB1, 1-aminocyclopropane-1-carboxylic acid (ACC), and 3,3-diaminobenzidine-HCl (DAB) were purchased from Sigma.
Seeds were sterilized and plated on 1/2x MS solid medium (1% sucrose, 0.8% agar), stratified in the dark for 2 days at 4°C, and then transferred into an incubator under a 16 h light/8 h dark cycle (4000 lux light intensity) at 22°C.
Chemical Treatments
For germination assays, 1/2x MS solid medium was supplemented with various combinations of 0.5 μM FB1 and 50 μM ACC. For sphingolipid analysis, seeds were germinated on 1/2x MS solid medium for 7 days, and the resulting seedlings were transferred to 1/2x MS solid medium supplemented with various combinations of 0.5 μM FB1 and 50 μM ACC for another 6 or 8 days under the same conditions. For gene expression, 7-day-old seedlings were transferred to 1/2x MS solid medium supplemented with 0.5 μM FB1 or 50 μM ACC, and harvested at 24 or 48 h.
DAB Staining
For analysis of the FB1-induced oxidative burst, 7-day-old seedlings were transferred to 1/2x MS solid medium supplemented with 0.5 μM FB1, harvested at 0, 12, 24, and 48 h. The seedlings were quickly immersed in 1 mg/ml DAB, then incubated for 3 h in the dark. The pigments in the DAB-stained seedlings were removed with acetic acid/glycerol/ethanol (1:1:3). DAB staining was observed under a stereomicroscope (SteREO Lumar.V12 Carl Zeiss) equipped with a CCD camera (AxioCam MRc, Carl Zeiss) and quantified by measuring the intensity per unit area, with Image J. At least six leaves per genotype were measured at each time point and three independent experiments were performed.
Sphingolipid Analysis
Sphingolipids were extracted as previously described (Wu et al., 2015). Briefly, about 100 mg of fresh seedlings was homogenized. Sphingolipids were extracted in the lower phase of isopropanol/hexane/water (v/v/v, 55:20:25) at 60°C for 15 min. After centrifugation, the supernatants were air-dried, de-esterified in 33% methylamine in ethanol/water (7:3, v/v), air-dried and re-dissolved in 1 ml methanol, and then analyzed with a Shimadzu UFLC XR/TripleTOF 5600 LC/MS system using an Agilent Eclipse XDB C8 column (50 mm × 2.1 mm, 1.8 μm). Quantification was performed based on peak area and internal standards. C17 base D-erythro-sphingosine and d18:1 C12:0-ceramide were used as internal standards.
Quantitative RT-PCR Analysis
Total RNA was extracted using the E.Z.N.A. Plant RNA Kit (Cat#R6827-01, OMEGA). The first-strand cDNA was synthesized from 1 μg of total RNA using the PrimeScript RT reagent Kit (TAKARA, DRR047A). Real-time PCR was performed using the SYBR Premix Ex Taq kit (Takara, RR820L) according to the manufacturer’s instructions, and quantitatively analyzed by Step One Plus Real-Time PCR Systems (AB SCIEX). Relative expression of genes was determined by applying the 2-ΔΔCT method and using ACT2 for normalization. The primers for amplification are listed in Supplementary Table S1.
Results
Enhanced Ethylene Signaling Rescues FB1-Induced Cell Death
The fungal toxin FB1, a well-known ceramide synthase inhibitor, provides a useful tool to study how plants regulate sphingolipid synthesis. As ethylene plays a pivotal role in FB1-induced cell death (Plett et al., 2009), we inferred that ethylene signaling may affect sphingolipid synthesis. To address this hypothesis, we selected mutants that affect ethylene signaling. The dominant negative ethylene receptor1 (etr1) mutant etr1-1 causes loss of ethylene perception (Bleecker et al., 1988). The constitutive triple response1 (ctr1) mutant ctr1-1 causes the loss of CTR1 kinase activity, and thus shows continuous activation of ethylene signaling (Kieber et al., 1993). The ethylene insensitive2 (ein2) mutant is impaired in ethylene signaling (Alonso et al., 1999). The ethylene-overproducing1 (eto1) mutant eto1-1, which produces excess ethylene, exhibits a constitutive ethylene response (Wang et al., 2004). Seeds of wild type, etr1-1, ctr1-1, ein2, and eto1-1 were germinated on half-strength Murashige and Skoog medium (1/2x MS) with or without 0.5 μM FB1. Phenotypes were sorted and analyzed after 6 days of treatment. Interestingly, about 30% of wild-type seedlings showed a severe phenotype, but only about 5% of ctr1-1 and eto1-1 seedlings showed severe phenotypes, and more than 85% of ert1-1, and ein2 seedlings showed severe phenotypes (Figure 1). Thus, the constitutive ethylene response mutants (ctr1-1 and eto1-1) exhibited more resistance to FB1 and the mutants deficient in ethylene signaling (etr1-1 and ein2) displayed more sensitivity to FB1.
Recently, a genetic screen for suppressors of ctr1-1 identified a ctr1 ein2 double mutant, which showed no response to ethylene (Zhang et al., 2014). To further confirm the role of ethylene signaling in FB1-induced cell death, we tested the responses of the ctr1 ein2 mutant to FB1 treatment. The ctr1 ein2 double mutant was hypersensitive to FB1, similar to the ein2 single mutants (Figure 2), indicating that ethylene signaling plays a vital role in the response to FB1.
Previous studies have shown that FB1 induces an oxidative burst, which may result in cell death (Stone et al., 2000; Shi et al., 2007). We asked whether the effects of ethylene signaling mutants on FB1 affected the oxidative burst. Seven-day-old seedlings of wild type, ein2, and eto1-1 were transferred to 1/2x MS supplemented with 0.5 μM FB1, and then seedlings were harvested at the indicated times. H2O2 was visualized by staining with diaminobenzidine (DAB). When seedlings were treated with FB1, we observed a significant increase in DAB staining in ein2 leaves, but a significant decrease in DAB staining in eto1-1 leaves compared to wild-type plants (Figure 3). These results indicate that ethylene signaling plays an important role in FB1-induced cell death.
Ethylene Signaling in Ceramidase Mutants Negatively Affects FB1-Induced Cell Death
To further test the idea that enhanced ethylene signaling could affect FB1-induced cell death, we employed a genetic approach using the mutants involved in sphingolipid synthesis. AtACER encodes an alkaline ceramidase that plays a critical role in sphingolipid homeostasis in Arabidopsis (Wu et al., 2015). acer-1, a T-DNA insertion mutant of AtACER, was hypersensitive to FB1 compared to wild type (Wu et al., 2015). By crossing ein2 and eto1 with acer, we generated ein2 acer and eto1 acer double mutants. As shown in Figure 4, we found that ein2 acer double mutant plants were more sensitive to FB1 than acer-1 mutant plants, but eto1 acer double mutants showed significantly increased resistance to FB1 (Figures 4A,C). The data indicated that blocking ethylene signaling enhanced the toxicity of FB1 and strengthening ethylene signaling decreased the toxicity of FB1. Interestingly, ACC significantly enhanced the tolerance of acer-1 mutants to FB1 (Figures 4B,D). Taken together, our results indicate that ethylene signaling in acer-1 mutants plays a negative role in FB1-induced cell death.
Ethylene Signaling Inhibits Sphingolipid Synthesis
Fumonisin B1 inhibits synthesis of very-long-acyl-chain (C > 18 carbons) ceramides and activates SPT, resulting in accumulation of LCBs and long-acyl-chain ceramides (C16; Abbas et al., 1994; Shi et al., 2007; Markham et al., 2011). FB1-induced cell death may occur through priming of downstream signaling by LCBs and ceramides (Shi et al., 2007; Wu et al., 2015). As we found that mutants of ethylene signaling pathways showed different phenotypes in response to FB1 treatment (Figures 5A,B), we analyzed the profiles of sphingolipids in wild type, ctr1-1, and ein2 with or without FB1 treatment. No significant difference was detected in the contents of LCBs among the mutants without FB1 treatment (Figure 5C); however, the ctr1-1 mutants had less ceramides and hydroxyceramides than the wild-type and ein2 plants (Figures 5D,E). After 6 days of FB1 treatment, the amounts of LCBs (especially t18:0 and d18:0) dramatically increased in all of the mutants, although ein2 showed a larger change and ctr1-1 showed a smaller change compared to wild type (Figure 5C). Total ceramides increased more than fivefold in ein2 mutants, but increased only twofold in wild type and 1.7-fold in ctr1-1 mutants, compared with untreated plants (Figure 5D).
We also compared ceramide species with different length fatty acid moieties, LCB moieties, or saturated or unsaturated fatty acid moieties (Supplementary Figure S1). Again, the data showed that the ctr1-1 mutants had less ceramide accumulation after FB1 treatment (Supplementary Figures S1A–C). The ctr1-1 mutants showed no significant change in total hydroxyceramides after FB1 treatment, whereas the ein2 mutants and wild type showed slight increases (Figure 5E). Overall, under normal growth conditions, the ctr1-1 mutants had less ceramides and hydroxyceramides compared to wild type and ein2 mutants. However, when seedlings were treated with FB1, the LCB, ceramide, and hydroxyceramide contents increased in wild type and ein2 especially; by contrast, only LCBs and ceramides accumulated in ctr1-1 mutants, and their contents were lower than in wild type, implying that ethylene signaling may negatively regulate sphingolipid synthesis.
To explore how ethylene signaling regulates sphingolipid synthesis, 7-day-old seedlings of wild type, ein2, and ctr1-1 mutants were transferred to 1/2x MS supplemented with 0.5 μM FB1, harvested at the indicated times, and used for measurement of expression of genes involved in de novo sphingolipid synthesis. Surprisingly, during FB1 treatment, almost all of the analyzed genes showed higher expression in ein2 mutants, but lower expression in ctr1-1 mutants, compared to wild type (Figure 6), suggesting that ethylene signaling modulates sphingolipids, possibly by regulating the expression of genes that participate in de novo synthesis of sphingolipids.
ACC Inhibits Sphingolipid Synthesis
To further assess the role of ethylene in sphingolipid synthesis, we tested the effects of the ethylene biosynthesis precursor ACC on FB1-induced cell death. Wild-type seeds were germinated on 1/2x MS supplemented with combinations of 0.5 μM FB1 and 50 μM ACC. As shown in Figure 6A, wild-type plants treated with ACC showed a relatively small stature, similar to ctr1-1 mutants. We found that ACC clearly reduced FB1-induced cell death (Figures 7A,B). To investigate whether ethylene affects synthesis of sphingolipids, 1-week-old seedlings of wild type were treated with combinations of 0.5 μM FB1 and 50 μM ACC for 6 days, and then sphingolipids were extracted and analyzed. Interestingly, ACC and ctr1-1 showed similar effects on sphingolipid contents. The amounts of ceramides and hydroxyceramides decreased after ACC treatment, compared to control (Figure 7C). Seedlings treated with FB1 plus ACC showed dramatically decreased sphingolipid accumulation including LCBs, hydroxyceramides, and ceramides (Figure 7C), indicating that ACC may antagonize FB1-induced sphingolipid synthesis. We next analyzed gene expression after ACC treatment. The genes involved in de novo sphingolipid synthesis were almost all down-regulated (Figure 7D), implying that ACC-mediated inhibition of synthesis of sphingolipids may be achieved by regulating expression of these genes.
Discussion
Sphingolipids have emerged as a bioactive lipids involved in many aspects of plant growth and responses to biotic or abiotic stresses. However, how plants regulate sphingolipid biosynthesis, and the relationship between sphingolipids and ethylene, remain unclear. In this study, we explored the role of ethylene signaling in sphingolipid synthesis by using the ceramide synthase inhibitor FB1. We demonstrated that ethylene can modulate sphingolipids by regulating the expression of genes related to the de novo biosynthesis of sphingolipids.
Under our experimental conditions, the etr1-1 mutant exhibited enhanced susceptibility to FB1 compared to wild-type plants, similar to the results reported by Plett et al. (2009). However, the plants used in other studies were cultivated under different photoperiod conditions, and these studies produced different results (Mase et al., 2013). The conflicting observations on the roles of ETR1 in FB1-induced cell death may be because plants use combinations of ethylene receptors to respond to various environments (Liu and Wen, 2012; Wilson et al., 2014). CTR1 and its downstream target EIN2 function as core components in the ethylene signaling pathway (Qiao et al., 2012; Wen et al., 2012). The roles of CTR1 and EIN2 in FB1-induced cell death remain critical questions. We found that the ctr1-1 mutant was more tolerant to FB1 compared to wild-type plants, whereas the ein2 mutant was much more susceptible to FB1. In addition, the ctr1 ein2 double mutant showed hypersensitivity to FB1, as did ein2, but not ctr1-1 mutants. Also, exogenous ACC could partially rescue the phenotype of FB1-treated seedlings. These data indicated that ethylene signaling plays a negative role in FB1-induced cell death. Consistent with previous reports, plants treated with FB1 resulted in a dramatic accumulation of LCBs and long chain ceramides (Abbas et al., 1994; Shi et al., 2007; Markham et al., 2011). The ceramidase mutant acer-1 with a higher ceramide levels, was more sensitive to FB1 compared to wild-type plants (Wu et al., 2015). Interestingly, the ein2 acer double mutant showed enhanced sensitivity to FB1, but the eto1 acer mutant showed reduced sensitivity to FB1. Moreover, FB1-treated acer-1 seedlings could be partially rescued by exogenous ACC. As LCBs and ceramides both can induce PCD in plants, we suggest that ethylene signaling may regulate FB1-induced cell death by modulating sphingolipid synthesis.
Although our understanding of sphingolipids has improved, little is known about how plants regulate sphingolipid metabolism. In yeast and human cells, Orm proteins control de novo synthesis of sphingolipids by inhibiting the activity of SPT, which participates in a phosphorylation-based feedback loop (Breslow et al., 2010; Roelants et al., 2011). In plants, however, we still lack evidence showing that certain proteins regulate sphingolipid synthesis. In this work, to test the role of ethylene in sphingolipid synthesis, we employed mutants affecting the ethylene signaling pathway and investigated their effects on FB1-induced perturbation of sphingolipids. The analysis of sphingolipids showed that before FB1 treatment, the amounts of LCBs did not significantly differ in wild-type, ctr1-1, and ein2 seedlings, but the ctr1-1 mutants had less ceramides and hydroxyceramides. When seedlings were treated with FB1, LCBs, ceramides and hydroxyceramides accumulated in wild-type and ein2 seedlings, with more accumulation in the ein2 seedlings; by contrast, we detected only limited accumulation of LCBs and ceramides in ctr1-1 seedlings. These results indicated that ethylene signaling may negatively regulate sphingolipids. To further explore the effects of ethylene on sphingolipid synthesis, we used ACC to mimic the action of ethylene. We found that ACC treatment resulted in lower ceramide and hydroxyceramide contents in seedlings compared to control, and could restrict FB1-induced sphingolipid synthesis. Gene expression analysis showed that almost all of the genes related to de novo sphingolipid synthesis were up-regulated in ein2 mutants but down-regulated in ctr1-1 mutants after FB1 treatment, and these genes were down-regulated after ACC treatment. Taken together, these data suggested that ethylene may modulate de novo synthesis of sphingolipids. As transcription factors are vital to the regulation of lipid synthesis (Kannangara et al., 2007; Raffaele et al., 2008), we also speculate that ethylene-responsive transcription factors may regulate the expression of genes that participate in sphingolipid synthesis.
In the past two decades, flourishing studies on sphingolipids in plants have revealed that sphingolipids have critical functions in plant morphogenesis, development, senescence, and resistance to biotic and abiotic stress. Ethylene pervades every aspect of plant life. Our findings illustrate the important connections between these two bioactive molecules and indicate that ethylene may modulate de novo synthesis of sphingolipids. Future studies will focus on the molecular mechanism by which ethylene modulates the expression of genes involved in sphingolipid synthesis.
Conflict of Interest Statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Acknowledgments
We thank Dr. Chi-Kuang Wen for the kind gift of the double mutant ctr1 ein2, and the ABRC for providing the Arabidopsis T-DNA mutants. This work was supported by National Natural Science Foundation of China (31170247), the National Key Basic Science 973 program (2012CB114006), and the Foundation of Guangzhou Science and Technology Project (201504010021). Key Project of Chinese Ministry of Education (107088).
Supplementary Material
The Supplementary Material for this article can be found online at: http://journal.frontiersin.org/article/10.3389/fpls.2015.01122
References
- Abbas H. K., Tanaka T., Duke S. O., Porter J. K., Wray E. M., Hodges L., et al. (1994). Fumonisin– and AAL-toxin-induced disruption of sphingolipid metabolism with accumulation of free sphingoid bases. Plant Physiol. 106 1085–1093. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Alonso J. M., Hirayama T., Roman G., Nourizadeh S., Ecker J. R. (1999). EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis. Science 284 2148–2152. 10.1126/science.284.5423.2148 [DOI] [PubMed] [Google Scholar]
- Asai T., Stone J. M., Heard J. E., Kovtun Y., Yorgey P., Sheen J., et al. (2000). Fumonisin B1-induced cell death in Arabidopsis protoplasts requires jasmonate-, ethylene-, and salicylate-dependent signaling pathways. Plant Cell 12 1823–1836. 10.2307/3871195 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bi F. C., Liu Z., Wu J. X., Liang H., Xi X. L., Fang C., et al. (2014). Loss of ceramide kinase in Arabidopsis impairs defenses and promotes ceramide accumulation and mitochondrial H2O2 bursts. Plant Cell 26 3449–3467. 10.1105/tpc.114.127050 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bleecker A. B., Estelle M. A., Somerville C., Kende H. (1988). Insensitivity to ethylene conferred by a dominant mutation in Arabidopsis thaliana. Science 241 1086–1089. 10.1126/science.241.4869.1086 [DOI] [PubMed] [Google Scholar]
- Bleecker A. B., Kende H. (2000). Ethylene: a gaseous signal molecule in plants. Annu. Rev. Cell Dev. Biol. 16 1–18. 10.1146/annurev.cellbio.16.1.1 [DOI] [PubMed] [Google Scholar]
- Breslow D. K., Collins S. R., Bodenmiller B., Aebersold R., Simons K., Shevchenko A., et al. (2010). Orm family proteins mediate sphingolipid homeostasis. Nature 463 1048–1053. 10.1038/nature08787 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buer C. S., Sukumar P., Muday G. K. (2006). Ethylene modulates flavonoid accumulation and gravitropic responses in roots of Arabidopsis. Plant Physiol. 140 1384–1396. 10.1104/pp.105.075671 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen M., Han G., Dietrich C. R., Dunn T. M., Cahoon E. B. (2006). The essential nature of sphingolipids in plants as revealed by the functional identification and characterization of the Arabidopsis LCB1 subunit of serine palmitoyltransferase. Plant Cell 18 3576–3593. 10.1105/tpc.105.040774 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen M., Markham J. E., Cahoon E. B. (2012). Sphingolipid Delta8 unsaturation is important for glucosylceramide biosynthesis and low-temperature performance in Arabidopsis. Plant J. 69 769–781. 10.1111/j.1365-313X.2011.04829.x [DOI] [PubMed] [Google Scholar]
- Chen M., Markham J. E., Dietrich C. R., Jaworski J. G., Cahoon E. B. (2008). Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis. Plant Cell 20 1862–1878. 10.1105/tpc.107.057851 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dietrich C. R., Han G., Chen M., Berg R. H., Dunn T. M., Cahoon E. B. (2008). Loss-of-function mutations and inducible RNAi suppression of Arabidopsis LCB2 genes reveal the critical role of sphingolipids in gametophytic and sporophytic cell viability. Plant J. 54 284–298. 10.1111/j.1365-313X.2008.03420.x [DOI] [PubMed] [Google Scholar]
- Dutilleul C., Benhassaine-Kesri G., Demandre C., Reze N., Launay A., Pelletier S., et al. (2012). Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling. New Phytol. 194 181–191. 10.1111/j.1469-8137.2011.04017.x [DOI] [PubMed] [Google Scholar]
- Gergoff G., Chaves A., Bartoli C. G. (2010). Ethylene regulates ascorbic acid content during dark-induced leaf senescence. Plant Sci. 178 207–212. 10.1016/j.plantsci.2009.12.003 [DOI] [Google Scholar]
- Greenberg J. T., Silverman F. P., Liang H. (2000). Uncoupling salicylic acid-dependent cell death and defense-related responses from disease resistance in the Arabidopsis mutant acd5. Genetics 156 341–350. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Guenther G. G., Peralta E. R., Rosales K. R., Wong S. Y., Siskind L. J., Edinger A. L. (2008). Ceramide starves cells to death by downregulating nutrient transporter proteins. Proc. Natl. Acad. Sci. U.S.A. 105 17402–17407. 10.1073/pnas.0802781105 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Guo L., Mishra G., Markham J. E., Li M., Tawfall A., Welti R., et al. (2012). Connections between sphingosine kinase and phospholipase D in the abscisic acid signaling pathway in Arabidopsis. J. Biol. Chem. 287 8286–8296. 10.1074/jbc.M111.274274 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hannun Y. A., Obeid L. M. (2008). Principles of bioactive lipid signalling: lessons from sphingolipids. Nat. Rev. Mol. Cell Biol. 9 139–150. 10.1038/nrm2329 [DOI] [PubMed] [Google Scholar]
- Hla T., Dannenberg A. J. (2012). Sphingolipid signaling in metabolic disorders. Cell Metab. 16 420–434. 10.1016/j.cmet.2012.06.017 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hua J., Meyerowitz E. M. (1998). Ethylene responses are negatively regulated by a receptor gene family in Arabidopsis thaliana. Cell 94 261–271. 10.1016/S0092-8674(00)81425-7 [DOI] [PubMed] [Google Scholar]
- Imai H., Nishiura H. (2005). Phosphorylation of sphingoid long-chain bases in Arabidopsis: functional characterization and expression of the first sphingoid long-chain base kinase gene in plants. Plant Cell Physiol. 46 375–380. 10.1093/pcp/pci023 [DOI] [PubMed] [Google Scholar]
- Ju C., Yoon G. M., Shemansky J. M., Lin D. Y., Ying Z. I., Chang J., et al. (2012). CTR1 phosphorylates the central regulator EIN2 to control ethylene hormone signaling from the ER membrane to the nucleus in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A. 109 19486–19491. 10.1073/pnas.1214848109 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kannangara R., Branigan C., Liu Y., Penfield T., Rao V., Mouille G., et al. (2007). The transcription factor WIN1/SHN1 regulates Cutin biosynthesis in Arabidopsis thaliana. Plant Cell 19 1278–1294. 10.1105/tpc.106.047076 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kieber J. J., Rothenberg M., Roman G., Feldmann K. A., Ecker J. R. (1993). CTR1, a negative regulator of the ethylene response pathway in Arabidopsis, encodes a member of the raf family of protein kinases. Cell 72 427–441. 10.1016/0092-8674(93)90119-B [DOI] [PubMed] [Google Scholar]
- Konig S., Feussner K., Schwarz M., Kaever A., Iven T., Landesfeind M., et al. (2012). Arabidopsis mutants of sphingolipid fatty acid alpha-hydroxylases accumulate ceramides and salicylates. New Phytol. 196 1086–1097. 10.1111/j.1469-8137.2012.04351.x [DOI] [PubMed] [Google Scholar]
- Li J., Bi F.-C., Yin J., Wu J.-X., Rong C., Wu J.-L., et al. (2015). An Arabidopsis neutral ceramidase mutant ncer1 accumulates hydroxyceramides and is sensitive to oxidative stress. Front. Plant Sci. 6:460 10.3389/fpls.2015.00460 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liang H., Yao N., Song J. T., Luo S., Lu H., Greenberg J. T. (2003). Ceramides modulate programmed cell death in plants. Genes Dev. 17 2636–2641. 10.1101/gad.1140503 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liu Q., Wen C. K. (2012). Arabidopsis ETR1 and ERS1 differentially repress the ethylene response in combination with other ethylene receptor genes. Plant Physiol. 158 1193–1207. 10.1104/pp.111.187757 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Maceyka M., Spiegel S. (2014). Sphingolipid metabolites in inflammatory disease. Nature 510 58–67. 10.1038/nature13475 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Markham J. E., Molino D., Gissot L., Bellec Y., Hematy K., Marion J., et al. (2011). Sphingolipids containing very-long-chain fatty acids define a secretory pathway for specific polar plasma membrane protein targeting in Arabidopsis. Plant Cell 23 2362–2378. 10.1105/tpc.110.080473 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mase K., Ishihama N., Mori H., Takahashi H., Kaminaka H., Kodama M., et al. (2013). Ethylene-responsive AP2/ERF transcription factor MACD1 participates in phytotoxin-triggered programmed cell death. Mol. Plant Microbe Interact. 26 868–879. 10.1094/MPMI-10-12-0253-R [DOI] [PubMed] [Google Scholar]
- Merchante C., Alonso J. M., Stepanova A. N. (2013). Ethylene signaling: simple ligand, complex regulation. Curr. Opin. Plant Biol. 16 554–560. 10.1016/j.pbi.2013.08.001 [DOI] [PubMed] [Google Scholar]
- Michaelson L. V., Zauner S., Markham J. E., Haslam R. P., Desikan R., Mugford S., et al. (2009). Functional characterization of a higher plant sphingolipid Delta4-desaturase: defining the role of sphingosine and sphingosine-1-phosphate in Arabidopsis. Plant Physiol. 149 487–498. 10.1104/pp.108.129411 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nagano M., Takahara K., Fujimoto M., Tsutsumi N., Uchimiya H., Kawai-Yamada M. (2012). Arabidopsis sphingolipid fatty acid 2-hydroxylases (AtFAH1 and AtFAH2) are functionally differentiated in fatty acid 2-hydroxylation and stress responses. Plant Physiol. 159 1138–1148. 10.1104/pp.112.199547 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nakagawa N., Kato M., Takahashi Y., Shimazaki K.-I., Tamura K., Tokuji Y., et al. (2012). Degradation of long-chain base 1-phosphate (LCBP) in Arabidopsis: functional characterization of LCBP phosphatase involved in the dehydration stress response. J. Plant Res. 125 439–449. 10.1007/s10265-011-0451-9 [DOI] [PubMed] [Google Scholar]
- Nishikawa M., Hosokawa K., Ishiguro M., Minamioka H., Tamura K., Hara-Nishimura I., et al. (2008). Degradation of sphingoid long-chain base 1-phosphates (LCB-1Ps): functional characterization and expression of AtDPL1 encoding LCB-1P lyase involved in the dehydration stress response in Arabidopsis. Plant Cell Physiol. 49 1758–1763. 10.1093/pcp/pcn149 [DOI] [PubMed] [Google Scholar]
- Pata M. O., Hannun Y. A., Ng C. K. (2010). Plant sphingolipids: decoding the enigma of the Sphinx. New Phytol. 185 611–630. 10.1111/j.1469-8137.2009.03123.x [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pata M. O., Wu B. X., Bielawski J., Xiong T. C., Hannun Y. A., Ng C. K. (2008). Molecular cloning and characterization of OsCDase, a ceramidase enzyme from rice. Plant J. 55 1000–1009. 10.1111/j.1365-313X.2008.03569.x [DOI] [PMC free article] [PubMed] [Google Scholar]
- Plett J. M., Cvetkovska M., Makenson P., Xing T., Regan S. (2009). Arabidopsis ethylene receptors have different roles in Fumonisin B-1-induced cell death. Physiol. Mol. Plant Pathol. 74 18–26. 10.1016/j.pmpp.2009.08.004 [DOI] [Google Scholar]
- Qiao H., Shen Z., Huang S. S., Schmitz R. J., Urich M. A., Briggs S. P., et al. (2012). Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science 338 390–393. 10.1126/science.1225974 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Raffaele S., Vailleau F., Leger A., Joubes J., Miersch O., Huard C., et al. (2008). A MYB transcription factor regulates very-long-chain fatty acid biosynthesis for activation of the hypersensitive cell death response in Arabidopsis. Plant Cell 20 752–767. 10.1105/tpc.107.054858 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Roelants F. M., Breslow D. K., Muir A., Weissman J. S., Thorner J. (2011). Protein kinase Ypk1 phosphorylates regulatory proteins Orm1 and Orm2 to control sphingolipid homeostasis in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. U.S.A. 108 19222–19227. 10.1073/pnas.1116948108 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ruzicka K., Ljung K., Vanneste S., Podhorska R., Beeckman T., Friml J., et al. (2007). Ethylene regulates root growth through effects on auxin biosynthesis and transport-dependent auxin distribution. Plant Cell 19 2197–2212. 10.1105/tpc.107.052126 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sentelle R. D., Senkal C. E., Jiang W., Ponnusamy S., Gencer S., Selvam S. P., et al. (2012). Ceramide targets autophagosomes to mitochondria and induces lethal mitophagy. Nat. Chem. Biol. 8 831–838. 10.1038/nchembio1212-1008c [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shi L., Bielawski J., Mu J., Dong H., Teng C., Zhang J., et al. (2007). Involvement of sphingoid bases in mediating reactive oxygen intermediate production and programmed cell death in Arabidopsis. Cell Res. 17 1030–1040. 10.1038/cr.2007.100 [DOI] [PubMed] [Google Scholar]
- Sperling P., Heinz E. (2003). Plant sphingolipids: structural diversity, biosynthesis, first genes and functions. Biochim. Biophys. Acta 1632 1–15. 10.1016/S1388-1981(03)00033-7 [DOI] [PubMed] [Google Scholar]
- Stone J. M., Heard J. E., Asai T., Ausubel F. M. (2000). Simulation of fungal-mediated cell death by fumonisin B1 and selection of fumonisin B1-resistant (fbr) Arabidopsis mutants. Plant Cell 12 1811–1822. 10.1105/tpc.12.10.1811 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Tamura K., Mitsuhashi N., Hara-Nishimura I., Imai H. (2001). Characterization of an Arabidopsis cDNA encoding a subunit of serine palmitoyltransferase, the initial enzyme in sphingolipid biosynthesis. Plant Cell Physiol. 42 1274–1281. 10.1093/pcp/pce165 [DOI] [PubMed] [Google Scholar]
- Teng C., Dong H., Shi L., Deng Y., Mu J., Zhang J., et al. (2008). Serine palmitoyltransferase, a key enzyme for de novo synthesis of sphingolipids, is essential for male gametophyte development in Arabidopsis. Plant Physiol. 146 1322–1332. 10.1104/pp.107.113506 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ternes P., Feussner K., Werner S., Lerche J., Iven T., Heilmann I., et al. (2011). Disruption of the ceramide synthase LOH1 causes spontaneous cell death in Arabidopsis thaliana. New Phytol. 192 841–854. 10.1111/j.1469-8137.2011.03852.x [DOI] [PubMed] [Google Scholar]
- Tsegaye Y., Richardson C. G., Bravo J. E., Mulcahy B. J., Lynch D. V., Markham J. E., et al. (2007). Arabidopsis mutants lacking long chain base phosphate lyase are fumonisin-sensitive and accumulate trihydroxy-18:1 long chain base phosphate. J. Biol. Chem. 282 28195–28206. 10.1074/jbc.M705074200 [DOI] [PubMed] [Google Scholar]
- Wang K. L., Yoshida H., Lurin C., Ecker J. R. (2004). Regulation of ethylene gas biosynthesis by the Arabidopsis ETO1 protein. Nature 428 945–950. 10.1038/nature02516 [DOI] [PubMed] [Google Scholar]
- Wang W., Yang X., Tangchaiburana S., Ndeh R., Markham J. E., Tsegaye Y., et al. (2008). An inositolphosphorylceramide synthase is involved in regulation of plant programmed cell death associated with defense in Arabidopsis. Plant Cell 20 3163–3179. 10.1105/tpc.108.060053 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wen X., Zhang C., Ji Y., Zhao Q., He W., An F., et al. (2012). Activation of ethylene signaling is mediated by nuclear translocation of the cleaved EIN2 carboxyl terminus. Cell Res. 22 1613–1616. 10.1038/cr.2012.145 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilson R. L., Kim H., Bakshi A., Binder B. M. (2014). The ethylene receptors ETHYLENE RESPONSE1 and ETHYLENE RESPONSE2 have contrasting roles in seed germination of Arabidopsis during salt stress. Plant Physiol. 165 1353–1366. 10.1104/pp.114.241695 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Worrall D., Liang Y. K., Alvarez S., Holroyd G. H., Spiegel S., Panagopulos M., et al. (2008). Involvement of sphingosine kinase in plant cell signalling. Plant J. 56 64–72. 10.1111/j.1365-313X.2008.03579.x [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wu J. X., Li J., Liu Z., Yin J., Chang Z. Y., Rong C., et al. (2015). The Arabidopsis ceramidase AtACER functions in disease resistance and salt tolerance. Plant J. 81 767–780. 10.1111/tpj.12769 [DOI] [PubMed] [Google Scholar]
- Zhang J., Yu J., Wen C. K. (2014). An alternate route of ethylene receptor signaling. Front. Plant Sci. 5:648 10.3389/fpls.2014.00648 [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.