Abstract
Meiosis is a tightly regulated process requiring coordination of diverse events. A conserved ERK/MAPK-signaling cascade plays an essential role in the regulation of meiotic progression. The Thousand And One kinase (TAO) kinase is a MAPK kinase kinase, the meiotic role of which is unknown. We have analyzed the meiotic functions of KIN-18, the homolog of mammalian TAO kinases, in Caenorhabditis elegans. We found that KIN-18 is essential for normal meiotic progression; mutants exhibit accelerated meiotic recombination as detected both by analysis of recombination intermediates and by crossover outcome. In addition, ectopic germ-cell differentiation and enhanced levels of apoptosis were observed in kin-18 mutants. These defects correlate with ectopic activation of MPK-1 that includes premature, missing, and reoccurring MPK-1 activation. Late progression defects in kin-18 mutants are suppressed by inhibiting an upstream activator of MPK-1 signaling, KSR-2. However, the acceleration of recombination events observed in kin-18 mutants is largely MPK-1-independent. Our data suggest that KIN-18 coordinates meiotic progression by modulating the timing of MPK-1 activation and the progression of recombination events. The regulation of the timing of MPK-1 activation ensures the proper timing of apoptosis and is required for the formation of functional oocytes. Meiosis is a conserved process; thus, revealing that KIN-18 is a novel regulator of meiotic progression in C. elegans would help to elucidate TAO kinase’s role in germline development in higher eukaryotes.
Keywords: KIN-18, MPK-1, TAO, meiosis, recombination, genetics of sex
THE germline contains a multitude of cells that proliferate to form a population that will undergo two meiotic divisions, giving rise to gametes. In meiosis, one round of DNA replication is followed by two cell divisions reducing the ploidy of the germ cell by half. A large fraction of the cells encompassing the germline are found in meiotic prophase I. Many of the key evolutionarily conserved events that take place in this specialized prophase are aimed at preparing chromosomes for their segregation in meiosis I. One such essential and conserved event is the formation of crossovers between homologous chromosomes. During the initial stages of meiotic prophase I (leptotene/zygotene), a protein structure named the synaptonemal complex (SC) starts to assemble between homologs (MacQueen et al. 2002; Schild-Prufert et al. 2011). Concurrently, meiotic DNA double-strand breaks (DSBs) are introduced to initiate meiotic recombination (Keeney et al. 1997; Dernburg et al. 1998). As meiosis progresses, germ cells enter pachytene where the SC is fully formed and meiotic DSBs are processed and repaired. In the presence of a fully formed SC, meiotic DSBs are repaired, giving rise to crossovers by late pachytene. In most multicellular organisms, apoptosis is activated in late pachytene and reduces the number of germ cells in the developing germline (Gumienny et al. 1999). Apoptosis serves as a quality control mechanism and assists in the growth of the surviving oocytes; dying cells serve as “nurse cells” (Andux and Ellis 2008). The timely occurrence of each stage of meiosis is required for the formation of functional euploid gametes. Therefore, mechanisms assuring the timely progression of meiotic events must exist in Caenorhabditis elegans as well as in other organisms.
Mitogen-activated protein kinase (MAPK) pathways regulate intracellular signaling in response to various extracellular stimuli (Widmann et al. 1999; Pearson et al. 2001). MAPK signaling cascades consist of terminal kinase MAPK and two upstream kinases, MAP2K and MAP3K. Three well-characterized subfamilies of MAPK are activated by specific upstream kinases in response to different stimuli: ERK, JNK, and p38 (Widmann et al. 1999; Pearson et al. 2001). The conserved ERK/MAPK-signaling cascade regulates meiotic progression in both vertebrate and invertebrate systems (Church et al. 1995; Fan and Sun 2004; Lee et al. 2007). In the C. elegans germline, the ERK ortholog MPK-1 is activated by upstream members LET-60/Ras, LIN-45/Raf (MAP3K), and MEK-2/Mek (MAP2K) along with the scaffold protein KSR-2 (Church et al. 1995; Hsu et al. 2002; Ohmachi et al. 2002). MPK-1 activation is temporally regulated: it is activated in pachytene, deactivated in diplotene, and then reactivated in proximal diakinesis oocytes (Lee et al. 2007). MPK-1 activation at pachytene is influenced by nutrient state and is mediated by the DAF-2 pathway (Lopez et al. 2013). Loss-of-function (lf) alleles of MPK-1 pathway members arrest prior to diplotene, indicating that MPK-1 activation is essential for normal meiotic progression (Church et al. 1995; Gumienny et al. 1999). The arrested nuclei cluster and eventually degenerate (Church et al. 1995; Hsu et al. 2002; Ohmachi et al. 2002). As wild-type nuclei progress through diplotene, MPK-1 is deactivated by LIP-1, a MAPK phosphatase, and oocytes remain arrested in prophase I at diakinesis (Hajnal and Berset 2002; Rutkowski et al. 2011). Then a signal from sperm, mediated by the major sperm protein, triggers the activation of MPK-1 in the proximal diakinesis oocyte. This activation leads to exit from meiotic prophase I and to the initiation of ovulation and the meiotic divisions (Miller et al. 2001; Kosinski et al. 2005).
Thousand And One (TAO) kinases were originally identified as mammalian homologs of Ste20 protein kinase in Saccharomyces cerevisiae (Hutchison et al. 1998; Chen et al. 1999). In mammalian tissue culture, TAO kinases function as a MAP3K that can activate p38 (MAPK) during stress response to trigger a cell cycle checkpoint (Hutchison et al. 1998; Chen et al. 1999, 2003; Chen and Cobb 2001; Yustein et al. 2003; Raman et al. 2007). TAOs were also shown to modulate actin cytoskeletal organization via JNK (MAPK) activation (Moore et al. 2000). Mammalian TAO1 and TAO2 expression is enriched in the testis, suggesting potential roles in the germline (Hutchison et al. 1998; Yustein et al. 2003). However, while the role of TAOs has been studied extensively in tissue culture and in somatic tissues, little is known about the function of TAO kinases in the germline.
Here we use C. elegans as a model system to investigate the germline function of TAO kinase. KIN-18 is the sole ortholog of TAO kinases in C. elegans and shares high sequence similarity in the kinase domain with both mammalian TAO1 and TAO2 (Hutchison et al. 1998). Previous publications have shown that KIN-18 is involved in the pharynx response during feeding and cell polarity in early embryonic development (Berman et al. 2001b; Spiga et al. 2013). Here we report the first direct evidence for the function of TAO kinase in meiosis by analyzing KIN-18’s role in the germline of C. elegans. Loss of KIN-18 leads to accelerated prophase I progression, aberrant oocyte development, and ectopic apoptosis. Our data indicate that the late-prophase defects result from the incorrect activation via phosphorylation of a specific isoform of MPK-1.
Materials and Methods
Strains
All strains were cultured under standard conditions at 20° (Brenner 1974). N2 worms were utilized as the wild-type background. The following mutations and chromosome rearrangements were used (Ohmachi et al. 2002; Zou et al. 2009; Yokoo et al. 2012; Spiga et al. 2013): LGI—hT2[bli-4(e937) qIs48], ksr-2(dx27), glp-4(bn2) and LGIII—kin-18(ok395). The following transgenic lines were used: meIs8(GFP::COSA-1) and smIs34 [ced-1p::ced-1::GFP+rol-6(su1006)]. All strains were outcrossed six times.
Analyses of the ok395 allele transcripts by RT-PCR
To determine if the deletion in ok395 mutants is in frame or out of frame, we conducted RT-PCR analyses. This was done using the Superscript III OneStep RT PCR kit (12574-026, Life Technologies) and primers ATGGCGCCTGCCGTCTTACAAA and GAAGATTACTGAGTTGTTGCCTG for kin-18 transcript isoform a (T17E91.a); and ATGGCGCCTGCCGTCTTACAAA and TTAGCCGTGGTTTTCATTTCC for kin-18 isoform b (T17E91.b). KIN-18 gene has two isoforms reported (http://www.wormbase.org). Isoform a is predicted to have 11 exons with 2969 bp while isoform b is composed of the first 4 exons, most of exon 5 (last 24 bp are absent), and a specific, short exon 6 (17 bp) with a total length of 1062 bp. Our RT-PCR sequence reveals that the ok395 allele is an in-frame deletion removing a protein-coding region spanning exon 2 through exon 7 of the isoform a transcript (Supporting Information, Figure S1; File S1). We did not observe any transcripts for isoform b in kin-18(ok395).
Fecundity assay
To determine the fecundity of the kin-18 mutants, single L4 worms were placed on seeded NGM plates and allowed to lay eggs for a 15-hr period. These worms were then moved to a fresh NGM plate and again allowed to lay eggs. This was repeated for 3 days. Following worm transfer, eggs were counted for each genotype examined. We counted the L1 and adults on each plate on the days following.
Apoptosis analysis
Germ-cell corpses were scored in adult hermaphrodites 18–20 hr post-L4 (Kelly et al. 2000; Zou et al. 2009). Statistical comparisons between genotypes were performed using the two-tailed Mann–Whitney test (95% C.I.).
Western blot
L4 homozygote larvae were picked and grown for 18–20 hr before flash-freezing in liquid nitrogen. The mouse α-MAPK-YT (Sigma, 1:2000) was used as a primary antibody for dpMPK-1 (Lee et al. 2007). The rabbit α-ERK1/2 (SC94, 1:10,000) was used as primary antibody for total MPK-1 (Lee et al. 2007). Mouse α-tubulin (1:5000; Developmental Studies Hybridoma Bank) was used as a loading control. Secondary antibodies used were α-mouse and α-rabbit antibodies conjugated to horseradish peroxidase (1:10,000 and 1:20,000 respectively). PBST-5% milk was used for blocking and PBST-1% BSA was used for primary incubation. Quantification was done on FIJI following National Institutes of Health guidelines.
Immunostaining and microscopy
All immunostaining and whole-worm preparation was performed on synchronized 18- to 20-hr post-L4 adults. Whole-worm preparation was performed by standard carnoy fixation. Immunostaining for RAD-51, SYP-1 (double staining), and dpMPK-1 were performed as described (Brockway et al. 2014). Primary antibodies were used at the following dilutions: rabbit α-RAD-51 (1:10,000) (ModEncod), mouse α-MAPK-YT (1:400), goat α-SYP-1 (1:500), rabbit α- PH3 (1:5000), rabbit α-HTP-3 (1:500), and rabbit α-HIM-3 (1:500). The secondary antibodies used were Alexa Fluor 488 α-Rabbit (1:500), Alexa Fluor 488 α-mouse (1:500), and DyLight 594 α-goat (1:500). Membrane was stained with agglutinin conjugated to fluorescein (Vector FL-1071), and cell width on the longer axis of each oocyte at the 60- × 60-μm most-proximal region was measured using softWoRx software (Applied Precision). GFP::COSA-1 foci microscopic analysis was performed as previously described (Yin and Smolikove 2013). The images were acquired using the DeltaVision wide-field fluorescence microscope system (Applied Precision) with Olympus 100X/1.40 lenses for SYP-1, RAD-51, and COSA-1 and a 60X/1.40 lens for dpMPK-1. Optical sections were collected at 0.20-µm increments with a coolSNAPHQ camera (Photometrics) and softWoRx software (Applied Precision) and deconvolved using softWoRx 5.0.0 software for SYP-1, RAD-51, and COSA-1.
For dpMPK-1 staining, all mutants were dissected with wild-type worms on the same slide. Mutants and wild-type germlines were differentiated by DAPI morphology. Only slides with successful (>90%) dpMPK-1 staining wild-type worms were scored for dpMPK-1 staining pattern. Single-panel images were taken for dpMPK-1 staining. Images were processed as in Lopez et al. (2013).
RAD-51 and COSA-1 foci quantification
Germlines were divided by 42-μm2 zones, and images were taken from the premeiotic tip at the most-proximal end. The meiotic stages of nuclei were decided based on SYP-1 morphology along with their position in the germline. Transition zone was counted starting with the row of nuclei containing ≥60% nuclei exhibiting foci or short noncontinuous stretches of SYP-1 morphology with a crescent-shaped chromosome. Early pachytene was counted, starting with the row of nuclei containing ≥60% nuclei exhibiting continuous but not-dispersed SYP-1 threads. Middle pachytene was counted starting with the row of nuclei containing ≥60% nuclei exhibiting continuous and dispersed SYP-1 threads. Diplotene was counted starting with the row of nuclei containing nuclei with discontinuous condensed SYP-1 morphology. Diakinesis was identified as nuclei with condensed DAPI bodies with stretches of SYP-1 threads. For number of gonads and nuclei scored per type, see Table S1.
Data availability
Strains are available upon request.
Results
KIN-18 is required for normal meiotic progression in C. elegans
To determine if KIN-18 functions in meiosis, we analyzed the deletion mutant kin-18(ok395) (Spiga et al. 2013). The ok395 allele produces a truncated messenger RNA that results in an in-frame 596-amino-acid (aa) deletion at the N terminus of both isoforms (Figure S1). This leads to 60% deletion of aa sequence of isoform a and 85% of isoform b and complete deletion of the predicted kinase domain as well as the predicted target binding domain (Berman et al. 2001b). Thus, the remaining truncated protein in ok395 is likely to be inactive.
kin-18 mutants are completely sterile with a brood size of 0 ± 0 (mean ± SD, wild-type brood size 286 ± 22, Mann–Whitney test, two-tailed, P < 0.01, n = 10, 5). The sterility observed in kin-18 mutants cannot be suppressed by mating to wild-type males (0 ± 0, n = 9). This indicates that KIN-18 is required for the production of embryos via its role in oogenesis.
To identify the causes for this sterility, kin-18 and wild-type hermaphrodites were fixed and stained with DAPI to visualize chromosomes. The C. elegans germline consists of two syncytial U-shaped gonads with nuclei arranged in a distal-to-proximal polarity with the mitotic tip (MT) at the distal end while mature oocytes and the spermatheca are found at the proximal end. Nuclei in the MT undergo proliferation to generate germline nuclei that enter meiosis (leptotene/zygotene) in a region termed the transition zone (TZ); this is followed by nuclei entering and progressing through pachytene (PT). The bend region of the U-shaped gonad contains nuclei transitioning from pachytene to diplotene. Diplotene nuclei will mature into diakinesis oocytes, as they become cellularized. Wild-type gonads show a highly ordered progression of nuclei in meiotic prophase I: pachytene nuclei are found before the bend region, and a single row of oocytes is observed following the bend region (Figure 1, A, C, and D). Based on our whole-worm analysis, kin-18 mutants have shorter gonads with mostly normal progression through middle pachytene (Figure 1B). However, the nuclei found subsequent to pachytene exhibit an abnormal meiotic progression with a mixture of diakinesis-like and pachytene-like nuclei before and after the bend region (Figure 1, B, E, and F). We define this mixed positioning (pre- and post-bend) of diakinesis nuclei as ectopic oocyte differentiation. Later analysis (see below) identified additional characteristics of ectopic oocyte differentiation and strengthened the argument that diakinesis oocytes defined by DAPI are indeed diakinesis oocytes.
In addition to the changes in meiotic progression, we also observed reduction in total nuclei numbers in kin-18 mutants. Wild-type gonads had an average of 687 ± 34 nuclei (mean ± SE) per gonad, and kin-18 worms had a significant reduction in the overall number of nuclei in the germline to 223 ± 7 (Mann–Whitney test, two-tailed, P < 0.01, Figure 1I). Division of nuclei at the mitotic tip is required for germline proliferation and determines the number of germline nuclei prior to the bend region (where apoptosis clears out nuclei). The overall reduction in the number of germline nuclei in kin-18 mutants can be attributed to changes in the cell cycle of the mitotically proliferating nuclei. We performed staining to the phosphorylated form of histone H3 (PH3), a marker for metaphase in wild-type and kin-18 worms. The ratio of PH3-positive nuclei to the total number of mitotic nuclei determines the mitotic index (Crittenden et al. 2006). We observed an increase in the mitotic index (PH3-positive cells/mitotic tip nuclei) in kin-18 mutants (mean ± SE: 3.73 ± 0.27 in wild type; mean ± SE: 7.01 ± 0.7 in kin-18 mutants; Figure S2D). Increased mitotic index can be a result of increased numbers of nuclei entering metaphase or increased numbers of nuclei lingering on in metaphase. Since the total number of nuclei in the kin-18 mutants was reduced, mitotic proliferation is likely reduced and not increased in kin-18 mutants, indicating that the increase in the mitotic index reflects a metaphase arrest or prolonged metaphase in some of the nuclei in the mitotic zone.
A standard approach to the analysis of the C. elegans germline involves dividing the germline into equal-size zones (see Materials and Methods), followed by quantitative analysis of meiotic events in each of these zones. Zones 1 and 2 are composed mainly of mitotic nuclei (premeiotic tip) undergoing proliferation to generate the nuclei population that enters meiosis in the next region, termed the “transition zone” (mostly zone 3). The nuclei in the transition zone are in the leptotene/zygotene stages and acquire a typical clustered (polarized) chromosomal organization and discontinuous, partially assembled SC. At pachytene (zones 4–7), chromosomes disperse from polarized organization, and the SC becomes linear and fully formed. Toward the end of pachytene (zones 6 and 7), nuclei either undergo physiological apoptosis or progress from diplotene to diakinesis, differentiating into oocytes (Gumienny et al. 1999). The SC undergoes stepwise disassembly starting in late pachytene (zone 7) through diplotene (zone 8) and diakinesis (zone 9–13). Bivalents are then connected only by crossovers and sister-chromatid cohesion (Schvarzstein et al. 2010). Late diakinesis nuclei cellularize to form oocytes and remain arrested with six bivalents until ovulation is triggered by sperm (Miller et al. 2001; Kosinski et al. 2005).
The germline of kin-18 mutants was smaller with reduced numbers of nuclei per zone compared to wild type (Figure 1I and Table S1). Without having a marker for meiotic progression that can differentiate all of the meiotic stages it is difficult to assess which nuclei are at any particular meiotic stage in kin-18 mutants. Meiotic stages are defined by chromosome structure and SC morphology (Zickler and Kleckner 1999). Studies in mice frequently use the morphology of the SC and chromosome morphology (by DAPI staining), based on examination of immunofluorescence preparation, as an indication of the meiotic stage of germline nuclei (Cole et al. 2012; Kauppi et al. 2013; Qiao et al. 2014). We adopted this metric to investigate meiotic progression in kin-18 mutants.
First, we tested whether SC morphology was altered in kin-18 mutants by using antibodies against HTP-3/HIM-3, SC axial components, and SYP-1, a central region protein of the SC (MacQueen et al. 2002). Using this method, kin-18 mutants showed no defects in SC assembly. This includes axis assembly prior to central region assembly and the gradual localization of SYP-1 onto chromosomes at meiotic entry followed by linear localization between pairs of chromosomes (Figure 2 and Figure S3). Although the position of meiotic nuclei in the gonad was altered (as discussed above), we did not observe any defects in chromosome morphology; chromosomes clustered at meiotic entry and dispersed as aligned tracks in later stages, and then nuclei with condensed and compact bivalents were observed. Therefore, the pattern of SC assembly in combination with chromosome organization could be used as an indication for the meiotic stage of each nucleus (Materials and Methods and Figure 2), similarly to the method used to determine the stages of meiosis in mice (Cole et al. 2012; Kauppi et al. 2013; Qiao et al. 2014). This method allowed us to determine the position in the gonad where nuclei move from the transition zone to early pachytene or from early pachytene to mid-pachytene.
Consistent with the whole-worm analysis (Figure 1, B, E, and F), kin-18 gonads displayed a mixture of diplotene/diakinesis and pachytene nuclei in the proximal region (Figure 2). We normalized the number of nuclei at each stage (based on SYP-1 and DAPI staining) to the total number of nuclei in the germline (Figure 1J). This normalization allowed us to examine whether any particular meiotic stage was over- or underrepresented in kin-18 mutants as compared to wild type. We observed a small, but statistically significant, decrease in the percentage of nuclei in early stages of meiosis (TZ, two-tailed Fisher’s exact test, P < 0.001), no change in early prophase (EP, two-tailed Fisher’s exact test, P > 0.05), and an increase in the percentage of nuclei in late prophase [middle and late pachytene (M/LP) and diplotene and diakinesis (DP DK), two-tailed Fisher’s exact test, P < 0.001; Figure 1J, Table S1, and Table S2]. These shifts may indicate that meiotic progression is accelerated in kin-18 mutants accompanied by irregular pachytene exit (as supported by additional findings; see below).
The proximal gonad of kin-18 mutants contained nuclei with diakinesis chromosome morphology. However, unlike the late diakinesis bivalents of wild type, which are spaced from each other, these bivalents were positioned in proximity to each other. This was likely due to the overall smaller volume of oocytes of kin-18 mutants (indicated by measurement of cell width) (Figure S4). Further analysis indicated that these nuclei were indeed diakinesis nuclei because they (1) show localization of PH3, typical for late diakinesis nuclei (Figure S2, E and F), and (2) lose localization of GLD-1 only in proximal nuclei with diakinesis chromosome morphology (Figure S5), indicating pachytene exit in these nuclei. Despite the normal assembly of the SC in kin-18 mutants, the SC disassembled aberrantly in kin-18 mutants; in wild-type, SYP-1 and PH3 localization is mostly restricted to the mid-bivalent region (the short arm of the bivalent) (Nabeshima et al. 2005), while, in kin-18 mutants, SYP-1 and PH3 stained both bivalent arms more frequently (both arms: wild type, 9%; kin-18, 81%; Table S3, Figure 2, and Figure S2, E and F). This indicates that, although oogenesis is taking place in kin-18 mutants, it is aberrant (small oocytes with defects in SC disassembly).
Early meiotic prophase I events are accelerated in kin-18 mutants
To test our hypothesis that progression through early prophase I was accelerated in kin-18 mutants, we analyzed the progression of a key meiotic event in early prophase I: homologous recombination. Meiotic recombination initiates in early prophase I by DSB formation and resection to ultimately form crossovers (Dernburg et al. 1998). To analyze meiotic recombination progression, we used RAD-51 and COSA-1 proteins as markers for DSB resection and crossover formation, respectively. RAD-51 is a single-strand (ssDNA)-binding protein that loads on resected (ssDNA) DSBs in early prophase (Alpi et al. 2003; Martin et al. 2005). RAD-51 is required for strand invasion that is the prerequisite to crossover formation (Martin et al. 2005). COSA-1 is a protein required for crossover formation that localizes to the one crossover found in each bivalent of C. elegans and therefore is a marker for late recombination events, marking crossovers as they are being processed in wild-type worms (Yokoo et al. 2012). RAD-51 and COSA-1 localization was analyzed using similar methods (divisions into zone and meiotic stages) as were used for SYP-1 localization (see Material and Methods).
In wild-type nuclei, RAD-51 loads onto chromosomes starting in early pachytene, and the number of foci peaks in middle pachytene (Figure 3, A and B; Figure S6; Figure S7). In kin-18 worms, the loading of RAD-51 peaks earlier (in early pachytene) with higher RAD-51 foci levels compared to wild type (Mann–Whitney two-tailed test, P < 0.001; Figure 3, A and C; Figure S6; Figure S7; Table S4; Table S5; Table S6; Table S7). The high levels of RAD-51 foci decrease in middle pachytene in kin-18 worms, resembling the number of foci per nucleus found in wild type at this stage (Figure 3A; Figure S6; Figure S7; Table S4; Table S5; Table S6). The earlier peak of RAD-51 foci (early pachytene vs. middle pachytene; Table S4 and Table S5) as well as an increase in the overall numbers of RAD-51 foci (Table S4 and Table S6) suggests that recombination timing is affected in kin-18 mutants.
Consistent with an earlier peak of RAD-51 loading, a marker for late stages in crossover formation localized earlier in kin-18 worms compared to wild type. Wild-type gonads exhibit six COSA-1 foci per nucleus at late pachytene (Figure 4, A, C, and E; Figure S8A, zone 6). In contrast, kin-18 mutant gonads displayed COSA-1 foci already in early pachytene, when they were never observed in wild type (Figure 4, B, D, and F; Figure S8B, zones 2–3, two-tailed Mann–Whitney test, P < 0.05 of nuclei from EP). Compared to wild type, significant enrichment of nuclei with crossovers/COSA-1 was also found in the mid- to late pachytene stages of kin-18 mutants (Figure 4, B, D, and F; Figure S8B, two-tailed Mann–Whitney test, P < 0.001 of nuclei from M/LP).
Absence of KIN-18 leads to ectopic and elevated apoptosis
In C. elegans about half the gonad’s nuclei undergo physiological apoptosis (at the bend region), and the surviving nuclei differentiate into oocytes (Gumienny et al. 1999). We observed an ectopic oocyte differentiation in kin-18 mutants around the same region in which apoptosis takes place in wild-type gonads (bend region, Figure 1). Therefore, we asked whether kin-18 mutants also display ectopic apoptosis. We used both CED-1::GFP and acridine orange staining as markers for apoptosis (Kelly et al. 2000; Zou et al. 2009). In wild-type gonads, apoptosis occurred only in late pachytene nuclei, prior to the bend region (Figure 5, A′, C, and D). In kin-18 mutants, apoptosis was not limited to around the bend region. Apoptosis was strikingly high after the bend region (toward the proximal end of the gonad), as indicated by both CED-1::GFP and acridine orange analysis (Figure 5, B′, C, and D). CED-1::GFP, but not acridine orange analysis, showed apoptotic nuclei also in the pre-bend region in kin-18 gonads (Figure 5, B′ and C). This is likely due to CED-1::GFP marking different steps in apoptosis compared to acridine orange analysis and CED-1::GFP being a more sensitive marker (Gartner et al. 2008). However, both were consistent with high levels of apoptosis in the proximal gonadal region. This high level of ectopic apoptosis pattern correlates with the ectopic oocyte differentiation. Indeed, 2-day-old adults displayed reduction in nuclei numbers in the proximal gonad (Figure S9). This is consistent with nuclei marked for apoptosis in day 1 being cleared by engulfment only by day 2. This also explains why no eggs were laid by the kin-18 mutants. Together, these results support a role for KIN-18 in the regulation of the normal timing of apoptosis.
KIN-18 negatively regulates the activation of MPK-1a
The MPK-1/ERK-signaling pathway is the master regulator of germline development in C. elegans (Church et al. 1995; Lee et al. 2007). Since kin-18 mutant gonads exhibit ectopic oocyte differentiation and apoptosis, we asked if MPK-1 activation is affected in the germline of kin-18 worms.
MPK-1 consists of two isoforms: MPK-1a and MPK-1b. MPK-1a is an isoform activated mainly in somatic cells (Lee et al. 2007). One study suggests that MPK-1a is also expressed in the pachytene region of the germline, although in much lower levels than in the soma (Schouest et al. 2009). The MPK-1b isoform is present only in the germline and has been suggested to be specific to proximal oocytes (Schouest et al. 2009). Activation of MPK-1 in pachytene regulates pachytene exit whereas its activation in diakinesis is required for ovulation (Church et al. 1995; Lee et al. 2007). We performed Western blot analyses using an antibody (MAPK-YT) specific for both isoforms of the activated di-phosphorylated MPK-1 (dpMPK-1) (Lee et al. 2007). Protein extracts from wild-type whole worms show two bands, ∼45 and ∼55 kDa in size, corresponding to dpMPK-1a and dpMPK-1b, while kin-18 mutants exhibit no dpMPK-1b but a threefold increase in dpMPK-1a (Figure 6, Mann–Whitney two tailed test, P < 0.001). To investigate if the amount of total MPK-1 is affected, we used an antibody that recognizes MPK-1 regardless of its phosphorylation state (Lee et al. 2007). kin-18 mutants did not have a significant increase of the total amount of MPK-1a compared to wild type (Figure 6, Mann–Whitney two-tailed test, P > 0.05). The level of total MPK-1b was greatly reduced in kin-18 mutants (Figure 6, Mann–Whitney two-tailed test, P < 0.001). These results indicate that activation of MPK-1a through phosphorylation is enhanced in the absence of KIN-18 and that this activation is not due to an effect on MPK-1a protein levels. In contrast to the normal levels of MPK-1a, MPK-1b protein levels were reduced in kin-18 mutants, indicating that KIN-18 is required for MPK-1b expression in the germline.
KIN-18 is required for the normal timing of MPK-1a activation
To determine if KIN-18 regulates the timing of MPK-1 activation, we performed immunostaining with the same antibody used for Western blot analysis (MAPK-YT). Since the position of the nuclei in the germline roughly reflects their meiotic stage, altered positioning of dpMPK-1 staining indicates an altered timing of MPK-1 activation. Wild-type gonads display two regions of activation of MPK-1: the region of activation that spans middle-to-late pachytene and a region of activation in oocytes most proximal to sperm (Figure 7A). kin-18 worms display an aberrant MPK-1 activation with 44% (n = 43) of the gonads showing no apparent activation, while 56% (n = 43) of gonads display activation at various positions (Figure 7B). Among gonads with aberrant MPK-1 activation, 33% (n = 43) exhibited one region of activation in various positions (Figure 7B). Among gonads with aberrant MPK-1 activation, 33% (n = 43) exhibited one region of activation (Figure 7B bottom) in various positions like the proximal end or early pachytene; the remaining 23% (n = 43) of gonads showed multiple regions of activation (Figure 7B top). Since Western blot analysis showed an absence of dpMPK-1b in kin-18 mutants, we reasoned that the dpMPK-1 staining likely represents dpMPK-1a and that this isoform is ectopically activated. That is, MPK-1 is activated both at elevated levels and in aberrant positions (i.e., in regions that normally lack MPK-1 activation in wild type).
Oocyte maturation and apoptosis in kin-18 mutants require canonical MPK-1/ERK signaling
To test our hypothesis that aberrant MPK-1 activation is responsible for the ectopic oocyte differentiation and apoptosis in kin-18 worms, we eliminated MPK-1 activation in kin-18 mutants. KSR-2 is a scaffold protein required for MPK-1/ERK activation in C. elegans, via regulating MEK-2/MAP2K phosphorylation by LIN-45/MAP3K (Ohmachi et al. 2002). We combined the ksr-2(dx27) loss-of-function allele with the kin-18 mutant allele to eliminate MPK-1 signaling in these kin-18 mutants. A Western blot of ksr-2 mutants is in agreement with the published absence of dpMPK-1b and a significant reduction in dpMPK-1a (Figure 6) (Ohmachi et al. 2002; Lee et al. 2007). Also, as published, the level of total MPK-1a and -b is not significantly affected in ksr-2 mutants compared to wild type (Figure 6, Mann–Whitney two- tailed test, P > 0.05) (Lee et al. 2007). While we observe no germline immunostaining in ksr-2; kin-18 worms, the presence of dpMPK-1a in whole-worm extracts suggests that ksr-2 eliminates MPK-1 signaling in a germline-specific manner (Figure 7, C and D). These findings are in agreement with previous publications (e.g., Ohmachi et al. 2002).
Our data suggest that ksr-2 is epistatic to kin-18, regarding late events in meiotic prophase I. The proximal end of the gonad in ksr-2;kin-18 double mutants was devoid of nuclei (no diplotene and diakinesis nuclei), a phenotype that is similar to ksr-2 single mutants (Figure 1, G, H, and J; Table S1). Furthermore, our analysis also showed a significant reduction of apoptosis especially in the post-bend region (Figure 5D). These results suggest that the abnormal oocyte differentiation and apoptosis in kin-18 mutants are due to aberrant activation of the canonical MPK-1/ERK-signaling pathway.
Normal dynamics of early recombination events depend on MPK-1 signaling
To investigate whether the acceleration and the increase in levels of RAD-51 foci in kin-18 mutants depends on MPK-1 activation, we examined RAD-51 localization in ksr-2 and kin-18; ksr-2 double mutants. The numbers of RAD-51 foci in ksr-2 mutants peak early—early pachytene, opposed to mid-pachytene (Figure 3, A and D; Figure S6; Figure S7)—and display an increased number of foci per nucleus (Figure 3A; Table S4; Table S5; Table S6). This phenotype is similar to that of kin-18 single mutants. As found in kin-18 mutants, ksr-2 single mutants show an increase in the overall levels of RAD-51 foci (Mann–Whitney two-tailed test, P < 0.001; Table S4 and Table S6). The localization pattern of RAD-51 foci in the kin-18; ksr-2 double mutants was similar to that of kin-18 mutants, consistent with both genes acting in the same pathway affecting RAD-51 localization (Figure 3, A and E; Figure S5; Figure S6; Table S4; Table S5; Table S6). In contrast to the effect of kin-18 mutants on COSA-1 localization, ksr-2 mutants did not exhibit premature formation of COSA-1 foci and did not completely suppress the phenotype of kin-18 mutants (Figure 4; Figure S8; Figure S10; Table S8). Therefore, in respect to recombination, kin-18 may be epistatic to ksr-2. This result indicates the effect of KIN-18 on early (recombination) vs. late (oocyte formation) meiotic events involving different pathways (see Discussion). All together these results suggest that early recombination events are altered when MPK-1 activation is abnormal, although some of the effects of KIN-18 on recombination may be MPK-1-independent.
Discussion
The data presented in this article indicate that KIN-18, the C. elegans ortholog of TAO kinases, is required for normal progression of meiotic events in the germline. TAOs have high expression levels in testis in mammals; however, the germline function of TAO kinase is not known in any system. The data presented here indicate that KIN-18 is required to coordinate recombination, oocyte differentiation, and apoptosis in the C. elegans germline. The absence of KIN-18 leads to accelerated recombination, ectopic oocyte differentiation, and elevated levels of apoptosis (summary in Figure 8). These results clearly support a meiotic role for TAO kinases in C. elegans oogenesis. We did not address the role of KIN-18 in spermatogenesis, which can also be affected by KIN-18.
KIN-18 is a molecular “timer,” restricting MPK-1a activation to late pachytene nuclei
MPK-1 signaling is essential for meiotic progression and is under tight regulation by upstream kinases and phosphatases (Sundaram 2006). Our data suggest that KIN-18 regulates both the timing and the level of MPK-1 activation. Western blot analyses indicate that kin-18 mutants have an increase in activated MPK-1a that is not due to changes in total protein levels; this suggests a role for KIN-18 as a negative regulator of MPK-1a activation. MPK-1a is required in the soma for vulva induction and was suggested to also be present in low levels in the germline [required for pachytene exit (Schouest et al. 2009)]. Thus, the increased levels of dpMPK-1a observed could be attributed to an increase in somatic dpMPK-1a activation, not necessarily occurring in the germline. Examination of dpMPK-1 in the germline via immunostaining and comparison of germline-deficient kin-18 mutants reveal that dpMPK-1a regulation is indeed altered in the germline. dpMPK-1a localizes in an aberrant pattern in kin-18 mutants ranging from no activation to multiple regions of activation, including premature activation. Furthermore, the kin-18 mutant activation regions are not restricted to middle late pachytene where dpMPK-1a is normally observed. One interpretation of the data is that MPK-1 is activated in different regions in each gonad in kin-18 mutants. Thus, while dpMPK-1 localization is variable between gonads, it remains “locked” in every gonad to a particular region (does not go through cycles of “on/off”). We believe that this is less likely, since if MPK-1 was constitutively activated in different regions in each germline, each kin-18 mutant’s gonad would have a distinct phenotype. However, we find the phenotype to be largely uniform. Alternatively, the variable pattern of staining observed in different gonads may reflect a “flickering” pattern of MPK-1a’s activation, where each gonad analyzed represents a snapshot of the same biological outcome. If true, this “flickering” suggests that MPK-1a signaling in kin-18 mutants is going through cycles and that the “on” state occurs at random and sometimes in multiple germline locations. Since the position of the nuclei in the germline reflects the time they spent in prophase, germline nuclei of kin-18 mutants are exposed to MPK-1a signaling at the wrong time. Based on all the data above, we propose that KIN-18 regulates the timing of MPK-1a activation so that in wild-type MPK-1a can be activated only in middle–late pachytene nuclei around the bend region to facilitate apoptosis and oocyte differentiation. This model does not suggest that dpMPK-1 phosphatase is also being simultaneously controlled by the KIN-18, but that there are multiple levels of control on dpMPK-1 ongoing and that some may not be under the control of KIN-18. In the absence of KIN-18, the “timer” of MPK-1 activation is lost and MPK-1a is activated at irregular times in germline development, leading to a “flickering” effect of MPK-1 signaling. This leads to defects in meiotic progression, which include ectopic oocyte apoptosis, which may prevent the expression of MPK-1b.
MPK-1 activation is essential for multiple aspects of meiotic progression
Activation of MPK-1 in late pachytene nuclei is crucial for maintaining a functional germline. Mutants that lack MPK-1 activation have a reduction in apoptosis, even under conditions in which apoptosis is induced by ionizing radiation (Rutkowski et al. 2011). Early MPK-1 activation can cause apoptosis in nuclei in which recombination has yet to be completed, leading to germ cell depletion. In kin-18 mutants, apoptosis levels are increased and some diakinesis nuclei appear in the distal regions in the germline (pre-bend), consistent with increased and ectopic MPK-1a activation. Oocytes produced by this aberrant meiosis are nonfunctional and cannot produce embryos, even when fertilized by wild-type sperm. In kin-18 mutants, even diakinesis nuclei that show fully condensed (normal) chromosomal morphology are aberrant; they develop into small oocytes, abnormally disassemble the SC, abnormally localize PH3, and do not produce the germline-specific MPK-1b isoform. Disruption of normal MPK-1 activation also affects the overall number of germline nuclei, as mutants with enhanced MPK-1 activation [lip-1, let-60(gf) (Lee et al. 2006)] also exhibit fewer numbers of germline nuclei. This kin-18 phenotype could be caused by the combination of elevated levels of apoptosis with reduced mitotic proliferation. Our data suggest that this reduction in nuclei number occurs mainly prior to apoptosis and therefore only partially depends on the elevated apoptosis caused by MPK-1 activation. These findings are consistent with the previously proposed potential role of MPK-1 signaling in mitotic proliferation (Lee et al. 2006, 2007).
MPK-1 signaling and the timing of meiotic DSB repair events
Meiotic recombination must be completed before germ cells differentiate into oocytes; there must be coordination between meiotic recombination and germline progression. MPK-1 signaling can be activated by DNA damage (ionizing irradiation), is involved in regulating DNA damage-induced apoptosis (Rutkowski et al. 2011), and was proposed to control the transition between RAD-50 dependent to independent loading of RAD-51 (Hayashi et al. 2007). Our work adds to these findings a possible link between MPK-1 signaling and DSB repair.
Although both loss of MPK-1 signaling (ksr-2 mutants) and aberrant MPK-1 signaling (kin-18 mutants) lead to an increase in RAD-51 foci, they do not have the same effect on the timing of appearance of crossover markers (COSA-1). This leads us to propose that the nature of the recombination defects observed in ksr-2 and kin-18 mutants is distinct. Moreover, since kin-18 is epistatic to ksr-2 regarding both RAD-51 and COSA-1 foci analysis, the role that KIN-18 plays in recombination is likely not dependent on its effect on MPK-1 signaling. As a kinase, it is likely that the targets are more than one: one in the MPK-1 pathway, regulating late prophase events, and one, yet undetermined, regulating early recombination events.
How can recombination be affected differently by KIN-18 and KSR-2? RAD-51 is an ssDNA-binding protein that is required for recombination. Accumulation of early pachytene RAD-51 foci can be interpreted in one of two ways: either RAD-51 loads more quickly onto DNA or it has more difficulty unloading from DNA. The first scenario might be a result of accelerated processing of meiotic DSBs to form ssDNA, leading to earlier loading of RAD-51. The second scenario might reflect defects in the repair of DSBs, so that ssDNA persists longer due to delays in downstream steps of recombination. We cannot differentiate between these two models based merely on the analysis of RAD-51 foci numbers. However, combined analysis of RAD-51 and COSA-1 may help distinguish between the two possibilities. If ssDNA processing is accelerated, then DSBs should be more quickly repaired to form crossovers, which can be visualized as a premature appearance of COSA-1 foci (i.e., kin-18 mutants phenotype). However, if DSB repair is perturbed, COSA-1 will load with delayed or wild-type kinetics [depending on whether all crossovers or just non-interfering crossovers or gene conversions are targeted (i.e., ksr-2 mutants phenotype)]. In our model, KIN-18 does not regulate the number of DSBs or the crossover/noncrossover decision, but rather the kinetics/timing of recombination. As a result, the overall number of COSA-1 foci is not affected in the kin-18 mutants. Our data are consistent with KIN-18 affecting earlier events in ssDNA processing that are upstream from KSR-2; however, in the absence of molecular data, this is, for now, only a working model.
It is possible that the elevated levels of RAD-51 in early pachytene are independent of MPK-1 signaling. However, KSR-2 is well studied, and the only known role for KSR-2 is in MPK-1 signaling. The effect of MPK-1 on DSB repair may be direct; among the many predicted targets of MPK-1 are two proteins required for homologous recombination repair of DSBs (RFS-1 and RPA-1) (Arur et al. 2009). If MPK-1 signaling indeed affects early pachytene events, how can early pachytene nuclei in ksr-2 mutants exhibit alteration in the DNA damage repair pathway that is dependent on MPK-1 signaling, which is normally a mid-to-late pachytene event? This requires that early and mid-pachytene nuclei communicate. Despite the gonad being a syncytium, the germline is not uniform: protein and RNA distribution in the germline shows a gradient and directionality of information movement enforced by cytoplasmic streaming. However, the common cytoplasm potentially allows the exchange of information between nuclei, raising the possibility that nuclei are not completely autonomous. Signaling from MPK-1-activated nuclei (mid-pachytene) to DSB formation (early pachytene) may not be very challenging since these nuclei are positioned relatively close to each other. The idea that downstream meiotic events can affect early meiotic events is plausible based on recent findings; crossover formation or complete synapsis (a later meiotic event) can signal to affect the number of DSB formed (early meiotic event) (e.g., Kauppi et al. 2013; Rosu et al. 2013). This model suggests that feedback loops communicate the progression of late meiotic events to regulate early meiotic events. The MPK-1-signaling pathway can be used to communicate such an effect in the C. elegans germline.
How does KIN-18 regulate MPK-1 activation in the germline?
We have shown that KIN-18 is required for the regulation of MPK-1a. The lack of MPK-1b protein can be explained by the aberrant oocyte differentiation and therefore is likely to be an indirect product of MPK-1a misregulation. The question of how KIN-18 regulates MPK-1a remains open. KIN-18 is unlikely to be a direct upstream kinase in the canonical MPK-1 cascade (LIN-45 → MEK-2 → MPK-1) or a kinase for the known MPK-1 phosphatase, LIP-1. First, if KIN-18 was a MAP3K of MPK-1a, lack of KIN-18 activity would eliminate MPK-1a phosphorylation. Since the opposite is true, KIN-18 likely does not regulate MPK-1a via MEK-2/MAPKK phosphorylation. Second, mutants of all genes known to directly activate/deactivate MPK-1 lead to phenotypes that differ from that of kin-18 mutants (Church et al. 1995; Hajnal and Berset 2002; Hsu et al. 2002; Ohmachi et al. 2002). Third, mammalian TAO kinases can activate the JNK (MAPK)- and p38 (MAPK)-signaling cascade but not ERK (MAPK) (Hutchison et al. 1998; Chen et al. 1999; Yustein et al. 2003). Therefore, we propose that KIN-18 regulates MPK-1 activation in an indirect manner by the following two mechanisms. First, KIN-18 functions as a MAP3K that activates an unknown effector kinase to regulate the canonical MPK-1 signaling. In addition to the MPK-1 phosphatase, it has been reported that MPK-1 activation can be altered by a subset of its own targets potentially via a feedback loop (Arur et al. 2009). Therefore, one possibility could be that KIN-18 signaling also regulates some of the same targets that can alter the canonical MPK-1 pathway. Based on conservation of TAO kinases, it is possible that KIN-18 also activates p38 (MAPK) or JNK (MAPK) signaling to activate those targets in C. elegans. Nevertheless, viable mutants of p38 orthologs in C. elegans do not affect the germline; two JNK orthologs interact with P-granule proteins, making it difficult to dissect their specific function in JNK signaling (Berman et al. 2001a; Smith et al. 2002; Orsborn et al. 2007). Second, KIN-18 may function independently of its kinase activity by interacting with one of the proteins involved in the canonical MPK-1 cascade, preventing its activation. It has been shown in vitro that rat TAO kinase can bind another MAP3K, TAK1, to prevent TAK1 from activating one of its downstream targets (Huangfu et al. 2006). While a wealth of evidence supports KIN-18’s function as a MAP3K, KIN-18 was originally identified as a homolog of a MAP4K, Ste20p in S. cerevisiae, along with other Germline Center Kinases (GCKs). In C. elegans, a germline center kinase, GCK-1, shares homology with KIN-18 and exhibits a similar, yet not identical, set of germline phenotypes as kin-18 mutants (Schouest et al. 2009). GCK-1 is speculated to regulate MPK-1 activation by sequestering MPK-1 protein, thus limiting its availability for activation (Schouest et al. 2009). It is possible that KIN-18 regulates MPK-1 activation utilizing a similar mechanism. Future investigations of potential targets as well as localization of KIN-18 would shed light onto the mechanism of KIN-18 regulation of MPK-1 signaling.
Based on our analysis of KIN-18 function in the C. elegans germline, it is likely that TAO kinases participate in germline development in other organisms as well. This is consistent with the high levels of germline expression of TAO kinase in rat and human testis (Hutchison et al. 1998; Yustein et al. 2003). Moreover, work in tissue culture has established a role for TAO kinase in the DNA damage-signaling response. DNA damage induced by ionizing radiation induces TAO2 expression, and TAOs are required for p38-mediated cell cycle arrest following ionizing radiation (Raman et al. 2007). We have shown that KIN-18’s effect on MPK-1 signaling affects the timely progression of recombination in meiosis. Our studies may therefore offer a way to understand the role that TAO kinases play in the germline of higher eukaryotes: coordinating key events such as recombination and apoptosis with meiotic progression.
Acknowledgments
Some strains were provided by the Caenorhabditis Genome Center, which is funded by National Institutes of Health Office of Research Infrastructure Programs (P40-OD010440). We thank M. Zetka for HIM-3 and HTP-3 antibodies; J. Kimble for the GLD-1 antibody; D. Houston for his help with membrane-staining reagents; V. Prahlad, R. E. Malone, and members of the Smolikove lab for critical reading of this manuscript; R. E. Malone and A. Wickenkamp for their help in sharing unpublished work that cultivated our interest in KIN-18; and R. E. Malone for discussion of our data. This work was supported mainly by National Science Foundation grant MCB-1121150 (to S.S.) and in part by National Institutes of Health grant R01GM112657 (to S.S.).
Footnotes
Communicating editor: M. P. Colaiácovo
Supporting information is available online at www.genetics.org/lookup/suppl/doi:10.1534/genetics.115.177295/-/DC1.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
Strains are available upon request.