Table 1.
Isolates of Sporothrix and Ophiostoma included in the study.
| Current/obsolete name | Strain | Country | Source | Genbank accession no. |
|||
|---|---|---|---|---|---|---|---|
| ITS | CAL | TEF1 | TEF3 | ||||
| S. brasiliensis | CBS 120339(T) | Brazil | Human | KP017087 | KP101421 | KP016994 | KP017184 |
| CBS 130106 | Brazil | Human | – | KP101422 | KP016985 | KP017204 | |
| CBS 130107 | Brazil | Human | – | KP101456 | KP016995 | KP017205 | |
| CBS 130109 | Brazil | Human | KP017088 | KP101455 | KP016996 | KP017138 | |
| CBS 130110 | Brazil | Human | KP017089 | KP101423 | KP016997 | KP017152 | |
| CBS 132985 | Brazil | Cat | – | KP101424 | KP016998 | KP017185 | |
| CBS 132987 | Brazil | Human | – | KP101425 | KP016999 | KP017194 | |
| CBS 132988 | Brazil | Human | – | KP101457 | KP016986 | KP017153 | |
| CBS 132989 | Brazil | Cat | – | KP101426 | KP016987 | KP017195 | |
| CBS 132990 | Brazil | Cat | – | KP101427 | KP016988 | KP017154 | |
| CBS 132991 | Brazil | Human | – | KP101428 | KP017000 | KP017155 | |
| CBS 132992 | Brazil | Human | – | KP101429 | KP017001 | KP017206 | |
| CBS 132993 | Brazil | Human | – | KP101430 | KP017002 | KP017186 | |
| CBS 132994 | Brazil | Dog | – | KP101431 | KP016989 | KP017156 | |
| CBS 132995 | Brazil | Cat | – | KP101432 | KP016990 | KP017157 | |
| CBS 132996 | Brazil | Cat | – | KP101433 | KP016991 | KP017158 | |
| CBS 132997 | Brazil | Cat | – | KP101449 | KP017003 | KP017139 | |
| CBS 132998 | Brazil | Cat | KP017090 | KP101434 | KP016992 | KP017159 | |
| CBS 132999 | Brazil | Cat | – | KP101453 | KP017004 | KP017187 | |
| CBS 133000 | Brazil | Cat | – | KP101450 | KP017005 | KP017140 | |
| CBS 133010 | Brazil | Cat | – | KP101440 | KP017013 | KP017145 | |
| CBS 133015 | Brazil | Cat | – | KP101445 | KP017018 | KP017149 | |
| CBS 133017 | Brazil | Cat | – | KP101458 | KP017020 | KP017150 | |
| CBS 133001 | Brazil | Cat | – | KP101451 | KP017005 | KP017141 | |
| CBS 133002 | Brazil | Cat | – | KP101452 | KP017005 | KP017142 | |
| CBS 133003 | Brazil | Cat | – | KP101454 | KP016982 | KP017188 | |
| CBS 133004 | Brazil | Dog | – | KP101435 | KP017008 | KP017189 | |
| CBS 133006 | Brazil | Cat | – | KP101436 | KP017009 | KP017143 | |
| CBS 133007 | Brazil | Cat | – | KP101437 | KP017010 | KP017190 | |
| CBS 133008 | Brazil | Cat | – | KP101438 | KP017011 | KP017144 | |
| CBS 133009 | Brazil | Cat | – | KP101439 | KP017012 | KP017191 | |
| CBS 133011 | Brazil | Cat | – | KP101441 | KP017014 | KP017146 | |
| CBS 133012 | Brazil | Cat | – | KP101442 | KP017015 | KP017147 | |
| CBS 133013 | Brazil | Cat | – | KP101443 | KP017016 | KP017192 | |
| CBS 133014 | Brazil | Cat | – | KP101444 | KP017017 | KP017148 | |
| CBS 133016 | Brazil | Cat | – | KP101446 | KP017019 | KP017193 | |
| CBS 133019 | Brazil | Cat | – | KP101447 | KP016993 | KP017196 | |
| CBS 133021 | Brazil | Cat | – | KP101448 | KP017021 | KP017151 | |
| S. globosa | CBS 120340(T) | Spain | Human | KP017084 | KP101459 | KP016949 | KP017165 |
| CBS 129717 | China | Human | – | KP101460 | KP016962 | KP017166 | |
| CBS 129718 | China | Human | – | KP101461 | KP016950 | KP017167 | |
| CBS 129719 | China | Human | KP017085 | KP101462 | KP016951 | KP017168 | |
| CBS 129720 | China | Human | – | KP101463 | KP016952 | KP017169 | |
| CBS 129721 | China | Human | – | KP101478 | KP016953 | KP017170 | |
| CBS 129722 | China | Human | – | KP101464 | KP016964 | KP017183 | |
| CBS 129723 | China | Human | – | KP101465 | KP016963 | KP017171 | |
| CBS 129724 | China | Human | – | KP101466 | KP016954 | KP017172 | |
| CBS 129725 | China | Human | – | KP101467 | KP016955 | KP017173 | |
| CBS 130104 | Spain | Human | – | KP101468 | KP016965 | KP017174 | |
| CBS 130105 | Spain | Human | – | KP101469 | KP016956 | KP017175 | |
| CBS 130115 | Spain | Human | – | KP101470 | KP016966 | KP017176 | |
| CBS 130116 | Spain | Human | – | KP101471 | KP016957 | KP017177 | |
| CBS 130117 | Japan | Human | – | KP101472 | KP016967 | KP017178 | |
| CBS 132923 | Brazil | Human | – | KP101473 | KP016958 | KP017179 | |
| CBS 132924 | Brazil | Human | KP017083 | KP101474 | KP016968 | KP017180 | |
| CBS 132925 | Brazil | Human | – | KP101475 | KP016959 | KP017203 | |
| CBS 292.55 | UK | Human | KP017086 | KP101476 | KP016960 | KP017181 | |
| CBS 340.35 | Japan | Human | – | KP101477 | KP016961 | KP017182 | |
| S. luriei | CBS 937.72(T) | South Africa | Human | AB128012 | AM747302 | KP016948 | KP017207 |
| S. mexicana | CBS 120341(T) | Mexico | Soil, rose tree | KP017072 | AM398393 | KP016931 | KP017230 |
| CBS 120342 | Mexico | Carnation | KP017073 | AM398392 | KP016932 | KP017231 | |
| CBS 132927 | Brazil | Human | – | JF811340 | KP016933 | KP017232 | |
| CBS 132928 | Brazil | Human | – | JF811341 | KP016934 | KP017234 | |
| CBS 133192 | Italy | Dog | KP017075 | JX080721 | KP016935 | KP017233 | |
| S. schenckii | CBS 125601 | Colombia | Human | – | KP101395 | KP016973 | KP017120 |
| S. schenckii | CBS 117440 | South Africa | Human | KP017098 | KP101386 | KP017026 | KP017114 |
| CBS 117842 | South Africa | Human | – | KP101387 | KP017027 | KP017115 | |
| S. sp. / S. schenckii | CBS 115870 | South Africa | NK | – | – | KP016930 | KP017229 |
| CBS 130101 | Peru | Human | KP017095 | KP101390 | KP017022 | KP017197 | |
| CBS 130103 | Argentina | Human | – | KP101388 | KP017025 | KP017117 | |
| CBS 130111 | Colombia | Human | – | KP101401 | KP016974 | KP017123 | |
| CBS 130112 | Peru | Human | KP017096 | KP101391 | KP017023 | KP017132 | |
| CBS 130114 | Peru | Human | – | KP101392 | KP017024 | KP017133 | |
| CBS 130097 | Bolivia | Human | – | KP101396 | KP016969 | KP017137 | |
| CBS 130098 | Peru | Human | KP017091 | KP101397 | KP016979 | KP017121 | |
| CBS 130099 | Peru | Human | KP017092 | KP101398 | KP016980 | KP017122 | |
| CBS 132926 | Brazil | Human | – | KP101404 | KP016981 | KP017202 | |
| CBS 132961 | Brazil | Cat | – | KP101402 | KP016970 | KP017124 | |
| CBS 132962 | Brazil | Human | – | KP101403 | KP016975 | KP017125 | |
| CBS 132964 | Brazil | Human | – | KP101407 | KP017031 | KP017118 | |
| CBS 132966 | Brazil | Human | – | KP101400 | KP017032 | KP017126 | |
| CBS 132969 | Brazil | Human | – | KP101409 | KP017029 | KP017198 | |
| CBS 132970 | Brazil | Human | – | KP101405 | KP016976 | KP017127 | |
| CBS 132971 | Brazil | Human | – | KP101411 | KP016977 | KP017160 | |
| CBS 132972 | Brazil | Human | – | KP101412 | KP016978 | KP017199 | |
| CBS 132973 | Brazil | Human | – | KP101408 | KP017033 | KP017200 | |
| CBS 132974 | Brazil | Human | – | KP101410 | KP016971 | KP017128 | |
| CBS 132975 | Brazil | Human | – | KP101406 | KP017034 | KP017119 | |
| CBS 132976 | Japan | Human | – | KP101415 | KP017035 | KP017201 | |
| CBS 132977 | Mexico | Plant debris | – | KP101399 | KP017030 | KP017134 | |
| CBS 132981 | Brazil | Human | – | KP101414 | KP017036 | KP017129 | |
| CBS 132982 | Brazil | Human | – | KP101416 | KP016972 | KP017130 | |
| CBS 211.61 | South Africa | NK | KP017093 | KP101393 | KP016983 | KP017135 | |
| CBS 345.53 | The Netherlands | Human | – | KP101417 | KP017038 | KP017161 | |
| CBS 356.29 | Germany | NK | – | KP101413 | KP017037 | KP017131 | |
| CBS 359.36(T) | USA | NK | KP017100 | KP101420 | KP017041 | KP017163 | |
| CBS 444.67 | Mozambique | Human | KP017099 | KP101389 | KP017028 | KP017116 | |
| CBS 472.48 | NK | NK | KP017097 | KP101418 | KP017039 | KP017162 | |
| S. schenckii / S. sp. | CBS 498.86 | NK | NK | – | KP101419 | KP017040 | KP017164 |
| S. schenckii | CBS 938.72 | France | Human | KP017094 | KP101394 | KP016984 | KP017136 |
| S. abietinum | CBS 125.89 | Mexico | Abies vejarii | AF484453 | – | – | – |
| S. africanum | CBS 116566 | South Africa | Protea caffra | DQ316200 | – | – | – |
| S. aurorae | CBS 118837(T) | South Africa | Pinus elliottii | DQ396796 | – | – | – |
| S. brunneoviolacea | CBS 793.73 | Germany | Meadow soil | KP017069 | KP017106 | KP017061 | KP017112 |
| S. brunneoviolacea / S. inflata | CBS 101570 | USA | Endophyte in Vitis vinifera | KP017068 | KP017101 | KP017057 | KP017108 |
| S. brunneoviolacea | CBS 110895 | Austria | Root of Quercus petraea– | KP017104 | KP017062 | KP017109 | |
| CBS 110896 | Austria | Root of Quercus robur– | KP017102 | KP017058 | KP017110 | ||
| CBS 124561(T) | Spain | Soil | FN546959 | KP017103 | KP017059 | KP017113 | |
| CBS 124562 | Spain | Soil | FN546957 | – | – | – | |
| CBS 124564 | Spain | Soil | FN546958 | KP017105 | KP017060 | KP017111 | |
| S. curviconia | CBS 959.73(T) | NK | NK | – | – | KP017047 | KP017241 |
| S. sp. / S. curviconia | CBS 145.94 | NK | NK | KP017071 | – | – | – |
| S. sp. / S. curviconia | CBS 541.84 | Chile | Pinus radiata log | KC113234 | KP101483 | KP017046 | KP017239 |
| S. dentifundum | CBS 115790(T) | Hungary | Quercus wood | AY495434 | – | – | – |
| S. dimorphospora / S. inflata | CBS 553.74(T) | Canada | Soil | KP017082 | – | KP017052 | KP017209 |
| CBS 840.73 | Chile | Wood | – | – | KP017050 | KP017210 | |
| S. dimorphospora | CBS 125439 | USA | Soil | KP017080 | – | KP017048 | KP017208 |
| CBS 125440 | Spain | Soil | KP017081 | – | – | – | |
| CBS 125442 | Spain | Soil | FN546961 | – | KP017051 | KP017212 | |
| S. foliorum | CBS 326.37 | The Netherlands | Industrial strain | KP017067 | – | KP016929 | KP017240 |
| S. fusiforme | CBS 112912 | Azerbaijan | Populus nigra | AY280481 | – | – | – |
| S. gemellus | CBS 121959(T) | South Africa | Tarsonemus sp. fromProtea caffra | DQ821560 | – | – | – |
| S. inflata | CBS 239.68(T) | Germany | Soil, wheat field | AY495426 | – | KP017054 | KP017213 |
| CBS 794.73 | Sweden | Humus in Picea forest | KP017079 | – | KP017053 | KP017216 | |
| CBS 841.73 | Chile | Soil | AY495431 | – | KP017055 | KP017214 | |
| S. sp. / S. inflata | CBS 156.72 | The Netherlands | Greenhouse soil | – | – | KP017056 | KP017215 |
| S. lignivora | CBS 119147 | South Africa | Eucalyptus wood pole | KP017064 | KP017107 | KP017063 | KP017242 |
| CBS 119148(T) | South Africa | Eucalyptus wood | KP017065 | – | – | – | |
| CBS 119149 | South Africa | Eucalyptus wood pole | KP017066 | – | – | – | |
| S. lunatum | CBS 112927(T) | Austria | Carpinus betulus | AY280485 | – | – | – |
| S. pallida | CBS 111110 | Germany | Insect, Zootermopsisnevadensis | – | AM398382 | KP016937 | KP017217 |
| S. pallida / S. stylites | CBS 115868 | South Africa | Eucalyptus camaldulensis | EF127881 | – | KP016941 | KP017221 |
| CBS 115869 | South Africa | Wood utility pole | EF127884 | – | KP016942 | KP017222 | |
| CBS 115872 | South Africa | Wood pole | EF127882 | – | KP016938 | KP017220 | |
| S. pallida / S. humicola | CBS 118129(T) | South Africa | Soil | KP017076 | – | KP016939 | KP017223 |
| S. pallida / S. stylites | CBS 118848(T) | South Africa | Wood pole | KP017077 | – | KP016943 | KP017224 |
| S. pallida / S. nivea | CBS 131.56(T) | Japan | Stemonitis fusca | EF127880 | – | KP016944 | KP017227 |
| S. pallida | CBS 182.63 | The Netherlands | Soil | KC113233 | – | KP016940 | KP017228 |
| S. pallida / S. schenckii | CBS 201.53 | South Africa | Decaying grass | – | – | KP016945 | KP017225 |
| S. pallida / S. albicans | CBS 302.73(T) | UK | Soil | KP017078 | AM398396 | KP016946 | KP017226 |
| S. pallida / S. sp. | CBS 622.95 | NK | NK | – | – | KP016947 | KP017218 |
| S. pallida / S. sp. | CBS 623.95 | NK | NK | – | – | KP016936 | KP017219 |
| S. palmiculminatum | CBS 119590(T) | South Africa | Protea repens | DQ316191 | – | – | – |
| S. phasma | CBS 119721(T) | South Africa | Protea laurifolia | DQ316219 | – | – | – |
| S. protearum | CBS 116567 | South Africa | Protea caffra | DQ316203 | – | – | – |
| S. splendens | CBS 116569 | South Africa | Protea repens | DQ316215 | – | – | – |
| S. stenoceras | CBS 237.32(T) | Norway | Pine pulp | AF484462 | – | – | – |
| S. variecibatus | CBS 121960 | South Africa | Protea longifolia | DQ821569 | KP101479 | KP017042 | KP017235 |
| CBS 121961(T) | South Africa | Oodinychus sp. mite fromProtea repens | KP017070 | KP101481 | KP017043 | KP017236 | |
| CBS 121962 | South Africa | Eucalyptus sp. | DQ821567 | KP101482 | KP017044 | KP017237 | |
| CBS 123288 | NK | NK | – | KP101480 | KP017045 | KP017238 | |
| Ceratocystiopsis minuta | RJ705 | Poland | Picea abies | EU913697 | – | – | – |
| O. ainoae | CMW 1903 | Norway | Picea abies | HM031495 | – | – | – |
| O. angusticollis | CBS 186.86 | USA | Pinus banksiana | AY924383 | – | – | – |
| O. arduennense | MUCL 44866 | Belgium | Fagus sylvatica | AY573241 | – | – | – |
| O. bacillisporum | MUCL 45378 | Belgium | Fagus sylvatica | AY573258 | – | – | – |
| O. bicolor | CBS 492.77 | USA | Gallery of Ips sp. inPicea sp. | DQ268604 | – | – | – |
| O. bragantinum | CBS 430.92 | Brazil | Soil | FN546964 | – | – | – |
| CBS 474.91(T) | Brazil | Soil | FN546965 | – | – | – | |
| O. breviusculum | YCC-522, JCM 12501 | Japan | Single ascospore isolate from YCC-494 | AB200423 | – | – | – |
| O. canum | CBS 133.51 | Sweden | Pinus sylvestris | HM031489 | – | – | – |
| O. catonianum | C1084 | Italy | Pyrus | AF198243 | – | – | – |
| O. conicola | CBS 127.89 | Mexico | Cone with Conophthorus cembroides | AY924384 | – | – | – |
| O. coronatum | CBS 497.77 | NK | NK | AY924385 | – | – | – |
| O. denticiliatum | CMW 29493 | Norway | Scolytus ratzeburgi on Betula sp. | FJ804490 | – | – | – |
| O. fasciatum | UM 56 | Canada | Pseudotsuga menziesii | EU913720 | – | – | – |
| O. flexuosum | CBS 208.83 | Norway | Picea abies | AY924387 | – | – | – |
| O. floccosum | CBS 799.73 | Sweden | Soil | AF198231 | – | – | – |
| O. fumeum | CMW 26813 | South Africa | Eucalyptus cloeziana | HM051412 | – | – | – |
| O. fuscum | CMW 23196 | Finland | Pityogenes chalcographus on Picea abies | HM031504 | – | – | – |
| O. ips | CMW 7075 | NK | NK | AY546704 | – | – | – |
| O. japonicum | YCC-099 | NK | NK | GU134169 | – | – | – |
| O. karelicum | CMW 23099 | Russia | Scolytus ratzeburgi on Betula pendula | EU443762 | – | – | – |
| O. kryptum | DAOM229701 | NK | NK | AY304436 | – | – | – |
| O. minus | AU58.4 | Canada | Lodgepole pine lumber | AF234834 | – | – | – |
| CCMA12 | NK | NK | AY934511 | – | – | – | |
| O. montium | CMW13221 | NK | NK | AY546711 | – | – | – |
| O. multiannulatum | MUCL19062 | NK | NK | AY934512 | – | – | – |
| O. nigrocarpum | ATCC22391 | USA | Dendroctonus sp. | AF484474 | – | – | – |
| CBS 637.66(T) | USA | Abies sp. | AY280489 | – | – | – | |
| O. nikkoense | YCC-430 | Japan | NK | AB506674 | – | – | – |
| O. novoulmi | C510 | USA | Ulmus sp. | AF198236 | – | – | – |
| O. piceae | CBS108.21(T) | Germany | NK | AF198226 | – | – | – |
| O. piliferum | CBS 129.32 | The Netherlands | Scots pine | AF221070 | – | – | – |
| O. pluriannulatum | MUCL18372 | NK | NK | AY934517 | – | – | – |
| O. quercus | CMW2467 | France | Quercus sp. | AY466626 | – | – | – |
| O. rostrocoronatum | CBS 434.77(T) | USA | Woodpulp | AY194509 | – | – | – |
| O. saponiodorum | CMW29497 | Finland | Ips typographus onPicea abies | HM031507 | – | – | – |
| O. sejunctum | Ophi 1A | NK | NK | AY934519 | – | – | – |
| O. setosum | AU160-38 | NK | NK | AF128929 | – | – | – |
| O. subannulatum | CBS 188.86 | USA | Pinus | AY934522 | – | – | – |
| O. tapionis | CMW23266 | Finland | Hylastes brunneus onPinus sylvestris | HM031493 | – | – | – |
| O. tenellum | CBS 189.86 | USA | Pinus banksiana | AY934523 | – | – | – |
| O. tetropii | CBS 428.94 | Austria | Breeding system ofTetropium sp., Picea abies | AY934524 | – | – | – |
| O. triangulosporum | DSMZ4934 | NK | NK | AY934525 | – | – | – |
| Pesotum australiae | CMW6606 | Australia | Acacia mearnsii | EF408603 | – | – | – |
| Pesotum cupulatum | C1194 | USA | Pseudotsuga | AF198230 | – | – | – |
O = Ophiostoma, S = Sporothrix, NK = Not known, T = type culture.