Skip to main content
Thorax logoLink to Thorax
. 1995 Nov;50(11):1211–1218. doi: 10.1136/thx.50.11.1211

Restriction fragment length polymorphism typing of Mycobacterium tuberculosis.

A C Hayward 1
PMCID: PMC475097  PMID: 8553281

Full text

PDF
1211

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Alland D., Kalkut G. E., Moss A. R., McAdam R. A., Hahn J. A., Bosworth W., Drucker E., Bloom B. R. Transmission of tuberculosis in New York City. An analysis by DNA fingerprinting and conventional epidemiologic methods. N Engl J Med. 1994 Jun 16;330(24):1710–1716. doi: 10.1056/NEJM199406163302403. [DOI] [PubMed] [Google Scholar]
  2. Beck-Sagué C., Dooley S. W., Hutton M. D., Otten J., Breeden A., Crawford J. T., Pitchenik A. E., Woodley C., Cauthen G., Jarvis W. R. Hospital outbreak of multidrug-resistant Mycobacterium tuberculosis infections. Factors in transmission to staff and HIV-infected patients. JAMA. 1992 Sep 9;268(10):1280–1286. doi: 10.1001/jama.1992.03490100078031. [DOI] [PubMed] [Google Scholar]
  3. Bendall R. P., Drobniewski F. A., Jayasena S. D., Nye P. M., Uttley A. H., Scott G. M. Restriction fragment length polymorphism analysis rules out cross-infection among renal patients with tuberculosis. J Hosp Infect. 1995 May;30(1):51–56. doi: 10.1016/0195-6701(95)90248-1. [DOI] [PubMed] [Google Scholar]
  4. Catanzaro A. Nosocomial tuberculosis. Am Rev Respir Dis. 1982 May;125(5):559–562. doi: 10.1164/arrd.1982.125.5.559. [DOI] [PubMed] [Google Scholar]
  5. Cave M. D., Eisenach K. D., Templeton G., Salfinger M., Mazurek G., Bates J. H., Crawford J. T. Stability of DNA fingerprint pattern produced with IS6110 in strains of Mycobacterium tuberculosis. J Clin Microbiol. 1994 Jan;32(1):262–266. doi: 10.1128/jcm.32.1.262-266.1994. [DOI] [PMC free article] [PubMed] [Google Scholar]
  6. Coronado V. G., Beck-Sague C. M., Hutton M. D., Davis B. J., Nicholas P., Villareal C., Woodley C. L., Kilburn J. O., Crawford J. T., Frieden T. R. Transmission of multidrug-resistant Mycobacterium tuberculosis among persons with human immunodeficiency virus infection in an urban hospital: epidemiologic and restriction fragment length polymorphism analysis. J Infect Dis. 1993 Oct;168(4):1052–1055. doi: 10.1093/infdis/168.4.1052. [DOI] [PubMed] [Google Scholar]
  7. Daley C. L., Small P. M., Schecter G. F., Schoolnik G. K., McAdam R. A., Jacobs W. R., Jr, Hopewell P. C. An outbreak of tuberculosis with accelerated progression among persons infected with the human immunodeficiency virus. An analysis using restriction-fragment-length polymorphisms. N Engl J Med. 1992 Jan 23;326(4):231–235. doi: 10.1056/NEJM199201233260404. [DOI] [PubMed] [Google Scholar]
  8. Daley C. L. Tuberculosis recurrence in Africa: true relapse or re-infection? Lancet. 1993 Sep 25;342(8874):756–757. doi: 10.1016/0140-6736(93)91535-t. [DOI] [PubMed] [Google Scholar]
  9. Das S., Chan S. L., Allen B. W., Mitchison D. A., Lowrie D. B. Application of DNA fingerprinting with IS986 to sequential mycobacterial isolates obtained from pulmonary tuberculosis patients in Hong Kong before, during and after short-course chemotherapy. Tuber Lung Dis. 1993 Feb;74(1):47–51. doi: 10.1016/0962-8479(93)90068-9. [DOI] [PubMed] [Google Scholar]
  10. Davies P. D. Drug resistant tuberculosis. BMJ. 1995 Feb 11;310(6976):400–401. doi: 10.1136/bmj.310.6976.400c. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Duerden B. I. Drug resistant tuberculosis. BMJ. 1995 Apr 8;310(6984):940–940. doi: 10.1136/bmj.310.6984.940b. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Dwyer B., Jackson K., Raios K., Sievers A., Wilshire E., Ross B. DNA restriction fragment analysis to define an extended cluster of tuberculosis in homeless men and their associates. J Infect Dis. 1993 Feb;167(2):490–494. doi: 10.1093/infdis/167.2.490. [DOI] [PubMed] [Google Scholar]
  13. Edlin B. R., Tokars J. I., Grieco M. H., Crawford J. T., Williams J., Sordillo E. M., Ong K. R., Kilburn J. O., Dooley S. W., Castro K. G. An outbreak of multidrug-resistant tuberculosis among hospitalized patients with the acquired immunodeficiency syndrome. N Engl J Med. 1992 Jun 4;326(23):1514–1521. doi: 10.1056/NEJM199206043262302. [DOI] [PubMed] [Google Scholar]
  14. Ehrenkranz N. J., Kicklighter J. L. Tuberculosis outbreak in a general hospital: evidence for airborne spread of infection. Ann Intern Med. 1972 Sep;77(3):377–382. doi: 10.7326/0003-4819-77-3-377. [DOI] [PubMed] [Google Scholar]
  15. Genewein A., Telenti A., Bernasconi C., Mordasini C., Weiss S., Maurer A. M., Rieder H. L., Schopfer K., Bodmer T. Molecular approach to identifying route of transmission of tuberculosis in the community. Lancet. 1993 Oct 2;342(8875):841–844. doi: 10.1016/0140-6736(93)92698-s. [DOI] [PubMed] [Google Scholar]
  16. Godfrey-Faussett P., Mortimer P. R., Jenkins P. A., Stoker N. G. Evidence of transmission of tuberculosis by DNA fingerprinting. BMJ. 1992 Jul 25;305(6847):221–223. doi: 10.1136/bmj.305.6847.221. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Godfrey-Faussett P., Stoker N. G. Aspects of tuberculosis in Africa. 3. Genetic 'fingerprinting' for clues to the pathogenesis of tuberculosis. Trans R Soc Trop Med Hyg. 1992 Sep-Oct;86(5):472–475. doi: 10.1016/0035-9203(92)90072-k. [DOI] [PubMed] [Google Scholar]
  18. Godfrey-Faussett P., Stoker N. G., Scott J. A., Pasvol G., Kelly P., Clancy L. DNA fingerprints of Mycobacterium tuberculosis do not change during the development of rifampicin resistance. Tuber Lung Dis. 1993 Aug;74(4):240–243. doi: 10.1016/0962-8479(93)90049-4. [DOI] [PubMed] [Google Scholar]
  19. Grange J. M., Laszlo A. Serodiagnostic tests for tuberculosis: a need for assessment of their operational predictive accuracy and acceptability. Bull World Health Organ. 1990;68(5):571–576. [PMC free article] [PubMed] [Google Scholar]
  20. Haas W. H., Butler W. R., Woodley C. L., Crawford J. T. Mixed-linker polymerase chain reaction: a new method for rapid fingerprinting of isolates of the Mycobacterium tuberculosis complex. J Clin Microbiol. 1993 May;31(5):1293–1298. doi: 10.1128/jcm.31.5.1293-1298.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Hermans P. W., van Soolingen D., Bik E. M., de Haas P. E., Dale J. W., van Embden J. D. Insertion element IS987 from Mycobacterium bovis BCG is located in a hot-spot integration region for insertion elements in Mycobacterium tuberculosis complex strains. Infect Immun. 1991 Aug;59(8):2695–2705. doi: 10.1128/iai.59.8.2695-2705.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  22. Hermans P. W., van Soolingen D., Dale J. W., Schuitema A. R., McAdam R. A., Catty D., van Embden J. D. Insertion element IS986 from Mycobacterium tuberculosis: a useful tool for diagnosis and epidemiology of tuberculosis. J Clin Microbiol. 1990 Sep;28(9):2051–2058. doi: 10.1128/jcm.28.9.2051-2058.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Hoffner S. E., Svenson S. B., Norberg R., Dias F., Ghebremichael S., Källenius G. Biochemical heterogeneity of Mycobacterium tuberculosis complex isolates in Guinea-Bissau. J Clin Microbiol. 1993 Aug;31(8):2215–2217. doi: 10.1128/jcm.31.8.2215-2217.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Hunter P. R., Gaston M. A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol. 1988 Nov;26(11):2465–2466. doi: 10.1128/jcm.26.11.2465-2466.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  25. Hunter P. R., Gaston M. A. Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. J Clin Microbiol. 1988 Nov;26(11):2465–2466. doi: 10.1128/jcm.26.11.2465-2466.1988. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Hutton M. D., Stead W. W., Cauthen G. M., Bloch A. B., Ewing W. M. Nosocomial transmission of tuberculosis associated with a draining abscess. J Infect Dis. 1990 Feb;161(2):286–295. doi: 10.1093/infdis/161.2.286. [DOI] [PubMed] [Google Scholar]
  27. Jereb J. A., Burwen D. R., Dooley S. W., Haas W. H., Crawford J. T., Geiter L. J., Edmond M. B., Dowling J. N., Shapiro R., Pasculle A. W. Nosocomial outbreak of tuberculosis in a renal transplant unit: application of a new technique for restriction fragment length polymorphism analysis of Mycobacterium tuberculosis isolates. J Infect Dis. 1993 Nov;168(5):1219–1224. doi: 10.1093/infdis/168.5.1219. [DOI] [PubMed] [Google Scholar]
  28. Kantor H. S., Poblete R., Pusateri S. L. Nosocomial transmission of tuberculosis from unsuspected disease. Am J Med. 1988 May;84(5):833–838. doi: 10.1016/0002-9343(88)90060-5. [DOI] [PubMed] [Google Scholar]
  29. Kent R. J., Uttley A. H., Stoker N. G., Miller R., Pozniak A. L. Transmission of tuberculosis in British centre for patients infected with HIV. BMJ. 1994 Sep 10;309(6955):639–640. doi: 10.1136/bmj.309.6955.639. [DOI] [PMC free article] [PubMed] [Google Scholar]
  30. Lundgren R., Norrman E., Asberg I. Tuberculosis infection transmitted at autopsy. Tubercle. 1987 Jun;68(2):147–150. doi: 10.1016/0041-3879(87)90032-8. [DOI] [PubMed] [Google Scholar]
  31. Mazurek G. H., Cave M. D., Eisenach K. D., Wallace R. J., Jr, Bates J. H., Crawford J. T. Chromosomal DNA fingerprint patterns produced with IS6110 as strain-specific markers for epidemiologic study of tuberculosis. J Clin Microbiol. 1991 Sep;29(9):2030–2033. doi: 10.1128/jcm.29.9.2030-2033.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  32. Millership S. E., Want S. V. Whole-cell protein electrophoresis for typing Mycobacterium tuberculosis. J Clin Microbiol. 1992 Nov;30(11):2784–2787. doi: 10.1128/jcm.30.11.2784-2787.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Pearson M. L., Jereb J. A., Frieden T. R., Crawford J. T., Davis B. J., Dooley S. W., Jarvis W. R. Nosocomial transmission of multidrug-resistant Mycobacterium tuberculosis. A risk to patients and health care workers. Ann Intern Med. 1992 Aug 1;117(3):191–196. doi: 10.7326/0003-4819-117-3-191. [DOI] [PubMed] [Google Scholar]
  34. Plikaytis B. B., Crawford J. T., Woodley C. L., Butler W. R., Eisenach K. D., Cave M. D., Shinnick T. M. Rapid, amplification-based fingerprinting of Mycobacterium tuberculosis. J Gen Microbiol. 1993 Jul;139(7):1537–1542. doi: 10.1099/00221287-139-7-1537. [DOI] [PubMed] [Google Scholar]
  35. Plikaytis B. B., Plikaytis B. D., Yakrus M. A., Butler W. R., Woodley C. L., Silcox V. A., Shinnick T. M. Differentiation of slowly growing Mycobacterium species, including Mycobacterium tuberculosis, by gene amplification and restriction fragment length polymorphism analysis. J Clin Microbiol. 1992 Jul;30(7):1815–1822. doi: 10.1128/jcm.30.7.1815-1822.1992. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Plikaytis B. D., Plikaytis B. B., Shinnick T. M. Computer-assisted pattern recognition model for the identification of slowly growing mycobacteria including Mycobacterium tuberculosis. J Gen Microbiol. 1992 Nov;138(11):2265–2273. doi: 10.1099/00221287-138-11-2265. [DOI] [PubMed] [Google Scholar]
  37. Reves R., Blakey D., Snider D. E., Jr, Farer L. S. Transmission of multiple drug-resistant tuberculosis: report of a school and community outbreak. Am J Epidemiol. 1981 Apr;113(4):423–435. doi: 10.1093/oxfordjournals.aje.a113110. [DOI] [PubMed] [Google Scholar]
  38. Rigouts L., Portaels F. Restriction fragment length polymorphism analysis of drug resistant Mycobacterium tuberculosis strains isolated in Belgium. Acta Clin Belg. 1994;49(1):5–11. doi: 10.1080/17843286.1994.11718356. [DOI] [PubMed] [Google Scholar]
  39. Ross B. C., Dwyer B. Rapid, simple method for typing isolates of Mycobacterium tuberculosis by using the polymerase chain reaction. J Clin Microbiol. 1993 Feb;31(2):329–334. doi: 10.1128/jcm.31.2.329-334.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  40. Samper S., Otal I., Rubio M. C., Vitoria M. A., Gómez-Lus R., Martín C. Aplicación del RFLP a la tipificación de cepas de Mycobacterium tuberculosis. Enferm Infecc Microbiol Clin. 1993 Dec;11(10):547–551. [PubMed] [Google Scholar]
  41. Schmid J., Voss E., Soll D. R. Computer-assisted methods for assessing strain relatedness in Candida albicans by fingerprinting with the moderately repetitive sequence Ca3. J Clin Microbiol. 1990 Jun;28(6):1236–1243. doi: 10.1128/jcm.28.6.1236-1243.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  42. Small P. M., McClenny N. B., Singh S. P., Schoolnik G. K., Tompkins L. S., Mickelsen P. A. Molecular strain typing of Mycobacterium tuberculosis to confirm cross-contamination in the mycobacteriology laboratory and modification of procedures to minimize occurrence of false-positive cultures. J Clin Microbiol. 1993 Jul;31(7):1677–1682. doi: 10.1128/jcm.31.7.1677-1682.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  43. Small P. M., Shafer R. W., Hopewell P. C., Singh S. P., Murphy M. J., Desmond E., Sierra M. F., Schoolnik G. K. Exogenous reinfection with multidrug-resistant Mycobacterium tuberculosis in patients with advanced HIV infection. N Engl J Med. 1993 Apr 22;328(16):1137–1144. doi: 10.1056/NEJM199304223281601. [DOI] [PubMed] [Google Scholar]
  44. Snider D. E., Jr, Jones W. D., Good R. C. The usefulness of phage typing Mycobacterium tuberculosis isolates. Am Rev Respir Dis. 1984 Dec;130(6):1095–1099. doi: 10.1164/arrd.1984.130.6.1095. [DOI] [PubMed] [Google Scholar]
  45. Tabet S. R., Goldbaum G. M., Hooton T. M., Eisenach K. D., Cave M. D., Nolan C. M. Restriction fragment length polymorphism analysis detecting a community-based tuberculosis outbreak among persons infected with human immunodeficiency virus. J Infect Dis. 1994 Jan;169(1):189–192. doi: 10.1093/infdis/169.1.189. [DOI] [PubMed] [Google Scholar]
  46. Takahashi M., Kazumi Y., Fukasawa Y., Hirano K., Mori T., Dale J. W., Abe C. Restriction fragment length polymorphism analysis of epidemiologically related Mycobacterium tuberculosis isolates. Microbiol Immunol. 1993;37(4):289–294. doi: 10.1111/j.1348-0421.1993.tb03212.x. [DOI] [PubMed] [Google Scholar]
  47. Telenti A., Marchesi F., Balz M., Bally F., Böttger E. C., Bodmer T. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J Clin Microbiol. 1993 Feb;31(2):175–178. doi: 10.1128/jcm.31.2.175-178.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  48. Thierry D., Matsiota-Bernard P., Pitsouni E., Costopoulos C., Guesdon J. L. Use of the insertion element IS6110 for DNA fingerprinting of Mycobacterium tuberculosis isolates presenting various profiles of drug susceptibility. FEMS Immunol Med Microbiol. 1993 Apr;6(4):287–297. doi: 10.1111/j.1574-695X.1993.tb00341.x. [DOI] [PubMed] [Google Scholar]
  49. Yuen L. K., Ross B. C., Jackson K. M., Dwyer B. Characterization of Mycobacterium tuberculosis strains from Vietnamese patients by Southern blot hybridization. J Clin Microbiol. 1993 Jun;31(6):1615–1618. doi: 10.1128/jcm.31.6.1615-1618.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  50. Zainuddin Z. F., Dale J. W. Does Mycobacterium tuberculosis have plasmids? Tubercle. 1990 Mar;71(1):43–49. doi: 10.1016/0041-3879(90)90060-l. [DOI] [PubMed] [Google Scholar]
  51. van Embden J. D., Cave M. D., Crawford J. T., Dale J. W., Eisenach K. D., Gicquel B., Hermans P., Martin C., McAdam R., Shinnick T. M. Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J Clin Microbiol. 1993 Feb;31(2):406–409. doi: 10.1128/jcm.31.2.406-409.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]
  52. van Soolingen D., Hermans P. W., de Haas P. E., Soll D. R., van Embden J. D. Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J Clin Microbiol. 1991 Nov;29(11):2578–2586. doi: 10.1128/jcm.29.11.2578-2586.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  53. van Soolingen D., de Haas P. E., Hermans P. W., Groenen P. M., van Embden J. D. Comparison of various repetitive DNA elements as genetic markers for strain differentiation and epidemiology of Mycobacterium tuberculosis. J Clin Microbiol. 1993 Aug;31(8):1987–1995. doi: 10.1128/jcm.31.8.1987-1995.1993. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Thorax are provided here courtesy of BMJ Publishing Group

RESOURCES