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The performance of rRNA recovery on only true positive 16S rRNA reads from synthetic community data
| Tool | # output genes | # genes recovered | # genera recovered | # incorrect assemblies | Running time |
|---|---|---|---|---|---|
| REAGO | 59 | 58/64 | 47/50 | 2 | 0:2:06 |
| EMIRGE, 16S DB, excluding the 64 genes | 82 | 45/64 | 36/50 | 45 | 0:52:19 |
| EMIRGE, 16S DB, excluding the 50 genera | 103 | 25/64 | 20/50 | 82 | 0:51:48 |
| IDBA-UD | 60 | 41/64 | 34/50 | 26 | 0:1:16 |
| MetaVelvet | 65 | 16/64 | 16/50 | 49 | 0:0:26 |
‘# output genes’ is the number of outputs longer than 1 350 nts.
