Abstract
Background
To develop a predictive multivariate normal tissue complication probability (NTCP) model for radiation-induced heart valvular damage (RVD). The influence of combined heart-lung irradiation on RVD development was included.
Methods and Materials
Multivariate logistic regression modeling with the least absolute shrinkage and selection operator (LASSO) was used to build an NTCP model to predict RVD based on a cohort of 90 Hodgkin lymphoma patients treated with sequential chemo-radiation therapy. In addition to heart irradiation factors, clinical variables, along with left and right lung dose-volume histogram statistics, were included in the analysis. To avoid overfitting, 10-fold cross validation (CV) was used for LASSO logistic regression modeling, with 50 reshuffled cycles. Model performance was assessed using the area under the receiver operating characteristic (ROC) curve (AUC) and Spearman’s correlation coefficient (Rs).
Results
At a median follow-up time of 55 months (range, 12–92 months) after the end of radiation treatment, twenty-seven out of 90 patients (30%) manifested at least one kind of RVD (mild or moderate), with a higher incidence of left-sided valve defects (64%). Fourteen prognostic factors were frequently selected (more than 100/500 model fits) by LASSO, which included mainly heart and left lung dosimetric variables along with their volume variables. The averaged cross-validated performance was AUC-CV = 0.685 and Rs = 0.293. The overall performance of a final NTCP model for RVD obtained applying LASSO logistic regression to the full dataset was satisfactory (AUC= 0.84, Rs= 0.55, p < 0.001).
Conclusion
LASSO proved to be an improved and flexible modeling method for variable selection. Applying LASSO, we showed, for the first time, the importance of jointly considering left lung irradiation and left lung volume size in the prediction of subclinical radiation related heart disease resulting in RVD.
Keywords: radiation-induced heart damage, LASSO, NTCP, Hodgkin’s lymphoma
Introduction
Late cardiovascular effects of thoracic irradiation are the result of coronary, myocardial and valvular pathology [1]. Radiation-induced heart valvular defects (RVD) may be regarded as a first step from an asymptomatic stage to overt heart failure, and as such may be considered as an early indicator of some types of late heart damage [2]. A better understanding of the underlying mechanism of such a toxicity could help in developing protective strategies to avoid clinically relevant cardiovascular side effects. Experimental studies in rats showed that irradiation of heart, lungs, or both independently induces specific cardiac dysfunction and associated pulmonary vascular damage, in a negative synergy [3, 4]. However, clinical studies in radiotherapy patients are necessary in order to link these results to humans [5].
In our latest analysis on Hodgkin lymphoma (HL) survivors [6–8] investigating RVD, we found that the risk of RVD cannot be modeled using traditional normal tissue complication probability (NTCP) models only based on heart dose-volume distribution. A multivariate logistic regression approach showed superior predictive power compared to traditional NTCP models and an improved performance can be obtained with the inclusion of heart and lung volume terms, indicating that heart-lung interactions are apparently important for this endpoint. For radiation-induced lung injury, in contrast, we found that left lung irradiation, compared to right lung irradiation, had a greater impact on lung toxicity. To better clarify the influence of combined heart-lung irradiation on RVD, in the present analysis we extend our investigation including more clinical and dosimetric factors. We hypothesize that incorporating left and right lung dose-volume histogram (DVH) factors separately in addition to heart DVH factors would result in a better combination of predictor variables. Further improvement of the current work is to use the least absolute shrinkage and selection operator (LASSO) method with cross-validation parameter tuning.
Recently, improved statistical machine learning methods such as LASSO, have been applied to build multivariate NTCP models [9–11]. In their comparative study, Xu et al [10] showed that LASSO models have significantly better predictive power than the stepwise selection method in predicting Grade 2 or higher xerostomia. In another study [11] using the same dataset, Xu et al confirmed the usefulness of LASSO in conjunction with repeated double cross validation and permutation tests for the validation of NTCP models. Lee et al [9] analyzed quality of life questionnaire data for head and neck cancer (HNC) patients to build a multivariate LASSO-based NTCP model for the risk of xerostomia after radiotherapy, which resulted in satisfactory performance. One of the main advantages of LASSO is that it allows us to perform feature selection and model construction simultaneously. The success of LASSO in NTCP modeling and its usefulness inspired us to develop LASSO-based NTCP models for the risk of RVD.
Methods and Materials
Patient dataset
A total of 115 consecutive HL survivors who were treated with post-chemotherapy supradiaphragmatic involved-field radiation therapy (RT) at our institution from November 2001 until November 2012 were identified. The study selection criteria included: a) cardiac evaluation by electrocardiography and echocardiography before chemotherapy (CHT), after CHT and before RT, and periodically after RT; b) no pre-treatment cardiac heart disease; c) a follow-up of at least 36 months; and d) availability of 3-dimentional dose maps.
Twelve of 115 (10.4%) patients had some type of pre-treatment cardiac abnormalities and were excluded from further evaluation. Five patients were excluded because 3D dose maps were not retrievable, and 8 patients were excluded for having a follow-up < 36 months (Figure S1 in Supplementary materials). After exclusion, a total of 90 patients were included with a median follow-up of 80 months (range, 38–140 months). Complete description of clinical variables and characteristics of the patients eligible for the analysis is reported Table 1 and Table S1. At a median time of 55 months (range, 12–92 months) after the end of radiation treatment, twenty-seven (30.0%) out of 90 patients manifested at least one kind of RVD (mild or moderate). Higher incidence of left-sided valve defects was confirmed: twenty patients (22.2%) had defects at mitral valve, 5 patients (5.6%) at aortic valve, and 14 patients (15.6%) at tricuspid valve. No pulmonary valve toxicity was recorded. Some patients had more than one valve defect.
Table 1.
Clinical variables and univariate analysis for radiation-induced heart valvular damage RVD incidence.
| Univariate analysis | ||||
|---|---|---|---|---|
| Characteristic | Rs | p-value | ||
| Continuous variables | Median (range) | |||
| Age (year) | 28 (14–70) | 0.011 | 0.924 | |
| Body mass index (kg/m2) | 25.0 (15.1–39.3) | 0.174 | 0.116 | |
| Heart volume (cc) | 539.3 (336.0–898.4) | 0.231 | 0.028 | |
| Lungs volume (cc) | 2708.4 (1396.1–5729.4) | −0.224 | 0.034 | |
| Left lung volume (cc) | 1254.9 (630.6–2792.5) | −0.280 | 0.008 | |
| Right lung volume (cc) | 1465.2 (732.0–2989.5) | −0.162 | 0.126 | |
| Categorical variables | N | % | ||
| Gender | ||||
| Female | 51 | 56.7 | −0.132 | 0.215 |
| Male | 39 | 43.3 | ||
| Histology | ||||
| Nodular sclerosis | 64 | 71.1 | ||
| Mixed cellularity | 21 | 23.3 | ||
| Lymphocyte-rich-classical | 5 | 5.5 | 0.063 | 0.555 |
| Stage | ||||
| I–II | 70 | 77.8 | ||
| III–IV | 20 | 22.2 | −0.058 | 0.585 |
| Chemotherapy regimen | ||||
| ABVD | 20 | 22.2 | ||
| VEBEP | 70 | 77.8 | −0.058 | 0.585 |
| Risk factors* | ||||
| None | 64 | 71.1 | ||
| Yes | 26 | 28.9 | 0.096 | 0.367 |
| Smokers | 12 | |||
| Diabetes | 2 | |||
| Hypertension | 5 | |||
| Hypercholesterolemia | 1 | |||
| Lung disease | 6 | |||
| Thyroid disease | 9 | |||
Abbreviations: VEBEP = vinblastine, etoposide, bleomycin, and epidoxorubicin; ABVD = doxorubicin, bleomycin, vinblastine, and dacarbazine; CRP= C-reactive protein; LDH= lactate dehydrogenase
There can be multiple factors simultaneously.
All the characteristics of the study design have been described in detail in our previous publication [8]. The present study represents an update on an extended dataset including 90 patients compared to previous 56 patients. Briefly, a diagnosis of RVD was based on the presence of regurgitation and/or stenosis (mild, moderate, or severe) of at least one of the aortic, mitral, tricuspid and pulmonary valves. All patients were treated with full 3D free-breathing computed tomography (CT)-based radiation treatment planning. Radiation therapy was administered using 6–20 MV photon beams from a linear accelerator with anteroposterior-posteroanterior fields. A median total dose of 32 Gy (range, 21–41 Gy) was prescribed. The daily fraction size ranged between 1.5 Gy and 1.8 Gy.
For all patients, contoured structures included the whole heart, and the left and right lung tissues, retrospectively contoured on planning CTs by the same radiation oncologist, following the heart atlas contouring guidelines published by Feng et al. [12], as well as the RTOG 1106 recommendations [13]. The total lung, combined with the left and right lung, was also considered.
Dose volume histogram metrics
DVH data were extracted from treatment planning data using the open-source software CERR (Computational Environment for Radiotherapy Research) [14]. Individual DICOM-RT plans (doses and organ contours) were converted to Matlab-readable format for further analysis (MATLAB version 7.6. Mathworks, Natik, MA). Various DVH metrics were extracted for modeling: the minimum dose to x% highest dose volume (Dx); the percentage volume receiving at least x dose (Vx); the absolute volume receiving at least x dose (AVx); maximum dose (Dmax); and mean dose (Dmean).
Complete DVHs and clinical data analyzed in the present study are available at http://www.ibb.cnr.it/?command=viewcms&id=88.
Predictive model building
Firstly, univariate logistic regression analysis for each candidate prognostic (clinical and dosimetric) factor was performed based on Spearman’s rank correlation coefficient (Rs). Only the variables most highly correlated with RVD (with a cutoff of Rs > 0.21) were included in the subsequent analysis. In order to avoid a collinearity problem, among these variables, redundant variables were further removed such that, among variables highly correlated with each other (Pearson correlation coefficient larger than 0.85), the variables with the lower correlation with RVD were removed.
We previously developed multivariate logistic regression methods for NTCP models with bootstrapping or leave-one-out cross-validation (LOOCV) approaches in a manner of forward feature selection [15]. In this study, for RVD modeling, we employed logistic regression and LASSO logistic regression methods. The LASSO is a linear regression model that employs penalized estimation to favor sparse models with a small number of variables. A key advantage of LASSO model is that it can simultaneously perform feature selection and model construction. LASSO logistic regression is a LASSO method for binary outcomes as in the case of our study.
For a given dataset of n patients and m variables, the logistic regression model is defined as:
| (0) |
with
| (0) |
where βk are the regression coefficients corresponding to xik prognostic factors for the i-th patient.
Let p(xi) = NTCP(RVD|xi), and ri is either 1 or 0 depending on whether a patient had RVD. Adding the L1 regularization penalty term, we have the following maximum log-likelihood equation:
| (0) |
where λ is a nonnegative tuning parameter that controls the sparsity of the model, determined by cross-validation.
To avoid overfitting, a 10-fold cross validation (CV) approach was used for both logistic regression and LASSO logistic regression modeling. In the approach, 90 patients were randomly shuffled and were split into 10 groups (folds). In the first iteration, the first group was used for testing while the remaining 9 groups for training. In the second iteration, the second group was used for testing and the remaining 9 groups for training, and so on until the last group was used for testing. This entire procedure was iterated 50 times with data shuffling, resulting in 500 different models. For LASSO logistic regression modeling, at each iteration, a nested 10-fold CV (splitting 9 training groups into new 10 groups) was used to find the optimal λ value (λ0), i.e. the λ value that minimizes the deviance curve. As the λ value increases, more coefficients are set to zero, leading to sparser model. Prognostic factors selected by λ0 or applying the “one standard error rule” (that chooses λ1 as the largest λ value within one standard error of the model corresponding to λ0) were used for building NTCP models [11]. Standardization of variables was performed before solving the LASSO problem in order to guarantee the penalty term would treat variables in a comparable way.
Model performance was evaluated by the area under the receiver operating characteristic (ROC) curve (AUC) and Rs. Calibration plots were generated for graphical assessment of the agreement between observed outcomes and predictions.
Results
Applying the variable exclusion criteria described in the statistical modeling section, we were left with 26 candidate prognostic factors. The candidate variables included 22 dosimetric variables and 4 clinical variables (i.e. heart, lungs, left and right lung volumes). The univariate analysis for representative Dx and Vx parameters and Rs plots of RVD incidence as a function of Dx and Vx for heart, lungs, left and right lung are reported in Supplementary materials (Table S2 and Figure S2).
Fourteen prognostic factors were selected by LASSO more than 100 times out of 500 sub-iterations (20%). Making the threshold as low as 30/500 does not change factors selected, indicating that factor selection was relatively robust. Variables selected by LASSO, besides heart dosimetric parameters and heart volume, included mainly left lung dosimetric parameters along with left lung volume (Figures 1a and 1b).
Figure 1.
(a) List of the 26 candidate variables and (b) their selection frequencies by least absolute shrinkage and selection operator (LASSO) logistic regression models during 10-fold cross validation with 50 iterations. Variables are named by their index numbers as listed in (a). The red dashed-line indicates the frequency of occurrence of 100; 14 variables are selected more than 100 times. (c) Deviance values of the LASSO models as a function of the regularization parameter λ. The optimal penalty λ, determined by 10-fold cross-validation, is the value that minimizes the deviance curve. The plot identifies the minimum-deviance (dashed line λ0) and the minimum deviance within one standard error (dashed line λ1) from λ0. (d) Trace plot showing nonzero model coefficients as a function of the regularization parameter λ. As λ increases to the left, LASSO sets various coefficients to zero, removing them from the model. When λ corresponds to the minimum-deviance (dashed line λ0), 12 variables are selected. When λ corresponds to the minimum-deviance within one standard error (dashed line λ1) from λ0, 8 variables are selected.
The LASSO logistic regression model resulted in an averaged AUC of 0.69 (standard deviation (SD): 0.022) and an averaged Rs of 0.29 (SD: 0.035) (averaged p = 0.008 (SD: 0.008)), whereas the logistic regression model resulted in an averaged AUC of 0.68 (SD: 0.03) and an averaged Rs of 0.23 (SD: 0.04) (averaged p = 0.013 (SD: 0.016)). The performance of the LASSO logistic regression model was slightly better than that of the logistic regression model (Mann-Whitney U test, p= 0.04). The LASSO method also had a smaller variability than logistic regression (Figure 2).
Figure 2.
Comparison of prediction performance for LASSO logistic regression method and logistic regression method: a) box plot for AUC; b) box plot for Rs; c) box plot for p values.
The 14 frequently selected prognostic factors were used to find a final NTCP model for RVD applying LASSO logistic regression. A model with 12 variables was found at λ0: four heart-related variables (D10, Dmax, AV30 and volume), five left lung-related variables (D15, D25, D95, Dmax, volume), two right lung-related variables (D25 and Dmax) and lungs Dmax. Of these, a subset of 8 variables was selected at λ1 (Figures 1c and 1d). Selected variables and the corresponding coefficients along with the models’ performance measures were reported in Table 2. To generalize the application of the LASSO models, we also reported the model coefficients for untransformed variables.
Table 2.
Prognostic factors selected for 12-variables and 8-variables LASSO models, corresponding standardized regression coefficients βi, odds ratios (OR) and transformed coefficients . Performance measures for each model are reported. For each variable, the mean and standard deviation (SD) used for standardization are indicated.
| 12-LASSO | 8-LASSO | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Variable | Mean ± SD | βi | OR |
|
βi | OR |
|
||
| D10 heart (Gy) | 24.7 ± 11.2 | 0.056 | 1.058 | 0.005 | - | - | - | ||
| Dmax heart (Gy) | 26.9 ± 11.0 | 0.083 | 1.087 | 0.008 | - | - | - | ||
| AV30 heart (cc) | 130.6 ± 174.2 | 0.248 | 1.281 | 0.001 | 0.149 | 1.161 | 0.001 | ||
| Heart volume (cc) | 558.0 ±122.5 | 0.673 | 1.960 | 0.004 | 0.24 | 1.271 | 0.001 | ||
| D15 left lung (Gy) | 26.4 ± 10.0 | 0.320 | 1.377 | 0.032 | 0.22 | 1.246 | 0.022 | ||
| D25 left lung (Gy) | 19.7 ± 11.1 | 0.121 | 1.129 | 0.011 | 0.021 | 1.021 | 0.002 | ||
| D95 left lung (Gy) | 0.6 ± 0.6 | 0.061 | 1.063 | 0.102 | 0.138 | 1.148 | 0.230 | ||
| Dmax left lung (Gy) | 31.3 ± 7.3 | 0.299 | 1.349 | 0.041 | - | - | |||
| Left lung volume (cc) | 1278.2 ± 381.3 | −0.792 | 0.453 | −0.002 | −0.165 | 0.848 | −0.0004 | ||
| D25 right lung (Gy) | 20.4 ± 11.8 | 0.174 | 1.190 | 0.0147 | 0.002 | 1.002 | 0.170 | ||
| Dmax right lung (Gy) | 31.4 ± 7.0 | 0.043 | 1.044 | 0.0061 | - | - | - | ||
| Dmax lungs (Gy) | 33.1 ± 3.1 | 0.16 | 1.174 | 0.0516 | 0.15 | 1.162 | 0.048 | ||
| Constant | −1.150 | −6.16 | −0.906 | −5.770 | |||||
| Performance measure | |||||||||
| Rs | 0.55 | 0.51 | |||||||
| AUC (95% CI) | 0.84 (0.77–0.93) | 0.82 (0.73–0.91) | |||||||
| Discrimination value | 0.29 | 0.29 | |||||||
| Calibration slope | 1.28±0.23 | 2.15±0.21 | |||||||
| Calibration intercept | −0.10±0.09 | −0.35±0.07 | |||||||
Abbreviations: Dx= the minimum dose to x% highest dose volume, Dmax = maximum dose, Vx= percentage volume receiving x Gy, AVx= absolute volume receiving x Gy. AUC = Area Under the ROC Curve, CI= confidence interval, Rs=Spearman’s correlation coefficient.
Performed transformation: and
By analyzing both the entire cohort of patients and only the group of patients who developed RVD, no difference was found between left lung and right lung DVHs (Figures S3a–S3d), meaning that both lungs were equally irradiated.
To investigate the cross-variable interaction between heart related variables and lung related variables, we designed a simple two-variable logistic regression model adding an interaction term to the regression model. We hypothesized that if there is correlation between heart and lung, a logistic regression model with two variables would show a higher predictive performance using a lung variable, a heart variable and a term in which the former variables are multiplied. Let A and B denote two variables. In such a model, three variables A, B and A×B were input, and AUC and Rs were calculated (Supplementary materials Table S3). As expected, models with a combination of heart and left lung variables showed the better performance as confirmed by higher AUC values.
Discussion
Trends towards longer survival following cancer therapy mean that more importance has to be given to iatrogenic effects such as radiation-induced toxicity [16]. Individualized patient risk assessment should be achieved in order to guide treatment choice and appropriate follow-up. The aim of the present work was to investigate all possible patient related clinical and dosimetric factors that could contribute to the development of radiation-induced valvular defects within a cohort of 90 HL survivors. This endpoint has two peculiarities: RVD may be considered as an early indicator of late heart damage [2] and RVD cannot be explained by vascular damage because the valves lack vasculature. Possibly, this damage is consequential to late injury of the surrounding myocardial endothelium, leading to fibrosis [17]. In addition, many studies have reported on the higher incidence of defects to left-sided valves [18–20]. Left sided valvular defects are more common also in the natural population; it has been argued that a higher pressure system on the left side of heart compared with the right side accounts for why the mitral and aortic valves are more affected than the pulmonary and tricuspid [1, 21].
Previously, our research group studied these defects, considering the importance of lung irradiation and lung volume size in predicting the RVD toxicity risk. The influence of the left lung irradiation on radiation-induced lung fibrosis was also investigated [7, 8]. Additionally, lung toxicity has very recently been correlated to lung volume size [22]. These results obtained in a clinical setting are consistent with those obtained from the Groningen group in animal studies [3, 4]. Unfortunately, the patho-physiological mechanisms of heart-lung interaction in the evolution of late toxicity after thoracic irradiation are still uncertain.
In the present study, our basic idea is to link all these results to perform a “clinical” radiation biology study through the development of robust predictive models. Analyzing an extended cohort of HL survivors including 90 patients (compared to 56 previously reported on [8]) with an extended follow-up, we found an RVD incidence of 30% with a left-side predominance compared with the right side (27.8% vs. 15.6%). Considering the age distribution of our patient cohort (Table S1) the natural incidence of low to moderate valvular defects is expected to be lower than 2% [23]. Overall, the obtained results are in agreement with the existing literature reporting on valvular lesions in irradiated patients [19, 20].
In the present study, thanks to an extended dataset and to an improved method for variable selection, namely LASSO, more variables have been taken into consideration. Applying the LASSO method with 10-fold CV, multiple optimized models were obtained and in each model, different variables were selected. Among the 26 candidate variables including heart along with left and right lung dosimetric and clinical parameters, only fourteen prognostic factors were found more than 100 times out of 500 different models and only 9 were selected with an occurrence higher than 50% (Figure 1b), thus representing more important predictive variables. Of these, most were related to left lung (D15, D25, D95, Dmax, volume) or lungs (Dmax) irradiation. The obtained results on the left lung were not related to an asymmetric irradiation of the different lungs. The only heart related variables with high occurrence were the absolute volume of the heart receiving more than 30 Gy, heart Dmax, and the heart volume. Interestingly, the heart volume and the volume of left lung were both selected 481 times (96.2%). The right lung volume was selected only 6 times. The RVD risk increases with larger volume of the heart while it decreases when left lung volume size increases (Table 2).
Although the LASSO has been successfully used in many practical problems, it has some limitations: (1) in the case of m (variables) > n (patients), the LASSO selects at most n variables. However, this is not the case in our study (n=90 and m=26); (2) when there is a group of variables among which there is high correlation, the LASSO tends to select only one variable or a few variables (depending on the λ value) from the highly correlated variables [24]. A main goal of our study is to build a better model to predict the risk of RVD rather than to identify highly correlated variables. Therefore, the limitation is not a main issue in our study. It is likely that some variables in the same organ (lung or heart) are highly correlated. In our analysis, it was found that some lung and heart variables appeared together in LASSO models, implying that lung is associated with the development of RVD.
Concerning model uncertainty assessment, using 10-fold CV test, the performance of LASSO method was slightly better and most importantly it showed a smaller variability than the logistic regression with stepwise selection, with narrower box plots of AUC, Rs and p (Figures 2a–c).
We have to keep in mind that the adopted approach produces multiple NTCP models for common feature selection and for model statistical confidence evaluation, instead of a single best NTCP model. However, for practical purpose we also generated a final LASSO model starting from the 14 frequently selected variables. Overall, the final 12-variable LASSO model showed a good performance and discrimination capability (AUC= 0.844) as well as a high agreement between observed outcomes and predictions (Figures 3a and 3b, adjusted R-squared=0.88).
Figure 3.
Mean predicted rates of radiation induced valvular defects in binned groups (a) and calibration plot between the observed and predicted rates (b). The patients were binned into 5 groups based on the observed toxicity, with 1 being the lowest toxicity group and 5 being with the highest, with the equal number of patients (18) in each group.
This study is the first to suggest the importance of jointly considering left lung irradiation and left lung volume size in the prediction of subclinical radiation related heart disease resulting in RVD. However, we cannot distinguish if these parameters are directly related to the analyzed outcome or carry information about a hidden parameter that is related to the outcome. Further external validation will be necessary for testing the clinical validity of this result.
Of note, this is not the first study to suggest that co-irradiation of the lung may influence heart function and vice versa [3, 4, 25]. The results of the present work represent a further confirmation that many variables are necessary to generate a reliable prediction tool able to consider a mechanism of multiple organ impairment, mainly when considering the cardio-pulmonary system.
As a whole, the obtained results pave the way to further investigations in order to clarify the still unclear role of lung and more specifically of left lung in the development of radiation induced valve defects and in order to implement an effective individualized risk prediction.
Supplementary Material
Acknowledgments
The authors thank Dr. Marco Comerci for his technical support. This work was partially supported by grants from the Italian Ministry for Education, University and Research (MIUR) in the framework of FIRB (RBFR10Q0PT_001 “DROPS” and RBNE08YFN3 “MERIT”).
Footnotes
Conflict of interest: none
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