. Author manuscript; available in PMC: 2016 Mar 18.

Published in final edited form as: Proteins. 2015 Jul 1;83(8):1500–1512. doi: 10.1002/prot.24838

Table III.

Timing results of GPU vs. CPU benchmarks. All timings are reported in seconds. Crysol reported timings to the nearest second. The first two measurements were not accurate and have been omitted.

PDB	Atoms	BCL::SAXS	Crysol	Quadro 600 $225	GTX470 $325	GTX480 $325	GTX580 $550	GTX680 $1000	C1060 $1300	Maximum Speedup
		CPU $1300		Quadro 600 $225	GTX470 $325	GTX480 $325	GTX580 $550	GTX680 $1000	C1060 $1300	Maximum Speedup
1O26_A	1832	3.6	-	0.1	0.07	0.07	0.07	0.07	0.09	51×
1WA5_C	7543	65	-	1	0.31	0.28	0.27	0.20	0.37	325×
1NR1	23217	624	2	9.3	2	1.9	1.8	1.2	2.7	520×
1ZUM	43243	2300	5	30	4.9	4.1	3.9	2.4	6.5	958×
1VSZ	91846	15365	10	132	19.8	16.9	15.8	9.0	26.3	1707×