Abstract
The mitochondrial DNA (mtDNA) of Absidia glauca has been completely sequenced. It is 63,080 bp long, has a G+C content of 28%, and contains the standard fungal gene set. A. glauca is the recipient in a laboratory model for horizontal gene transfer with Parasitella parasitica as a donor of nuclei and mitochondria.
GENOME ANNOUNCEMENT
Absidia glauca is a well-studied genetic model among mucoralean fungi. Especially appealing is the interaction with the mycoparasite Parasitella parasitica. This biotrophic parasitism involves the fusion of specialized hyphal tips with the host A. glauca and other Mucor relatives (1). The transfer and expression of nuclear genes have been described for several genes involved in amino acid biosynthesis or that confer antibiotic resistance (2, 3). After infection, auxotrophic mutants of A. glauca are complemented by their prototrophic counterparts of the parasite. In order to initiate the analysis of mitochondrial information after transfer, we sequenced the mitochondrial DNA (mtDNA) of both A. glauca and P. parasitica (4).
The Absidia chondriome was revealed by Illumina sequencing (Eurofins Genomics, Ebersberg, Germany). The mitochondrial information resides on a single circular molecule with a total length of 63,080 bp. Compared with others, A. glauca is among fungi with the largest mtDNA. For other zygomycetes, lengths differ by 54,178 bp in Rhizopus oryzae (5) and 62,082 bp in Phycomyces blakesleeanus (accession no. KR809878).
The Absidia chondriome harbors genes for those proteins that are normally found in fungi, the small and large subunit rRNAs, and 24 tRNAs. An unusual feature of the A. glauca chondriome is the cluster of tRNAs, which encompasses all tRNA genes. On the whole, 29 protein-coding genes were identified, 12 of which are split or duplicated (atp9, cob, cox1, cox2, cox3, nad1, nad3, nad4, nad5, nad6, nad2, and trnM). Both DNA strands are transcribed.
The chondriome harbors 12 genes for endonucleases (four with the LAGLIDADG domain and eight with the GYI-YIG domain). Most of them are intron situated (9 of 12) and thus must be addressed as true homing endonucleases. The number of endonucleases in other zygomycetes ranges between zero in the opportunistic human pathogen Lichtheimia ramosa (6) and 12 in Phycomyces blakesleeanus. Remarkably, the chondriome of the host P. parasitica contains 27 endonucleases.
Nucleotide sequence accession number.
The mtDNA sequence is deposited in GenBank under accession no. KU196782.
ACKNOWLEDGMENTS
The gene transfer studies on P. parasitica were funded by DFG grant WO323/17-1. Illumina sequencing of A. glauca DNA was financed by university resources.
Funding Statement
This research received no specific grant from any funding agency in the public, commercial, or not-for-profit sectors.
Footnotes
Citation Ellenberger S, Burmester A, Wöstemeyer J. 2016. Complete mitochondrial DNA sequence of the mucoralean fungus Absidia glauca, a model for studying host-parasite interactions. Genome Announc 4(2):e00153-16. doi:10.1128/genomeA.00153-16.
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