There are multiple errors in the values for product size in Table 2, “Primer information.” Please see the corrected Table 2 here.
Table 2. Primer information.
| group/species | Standard Strain | Strain No. | Primer name | Sequence (5'-3') | Anealing Temp (°C) | Product size (bp) |
|---|---|---|---|---|---|---|
| Clostridium coccoides group | Blautia producta | JCM 1471T | g-Ccoc-F | AAATGACGGTACCTGACTAA | 55 | 440 |
| g-Ccoc-R | CTTTGAGTTTCATTCTTGCGAA | |||||
| Eubacterium ventriosum | Eubacterium ventriosum | ATCC 27560T | s-Event-F | GTCGGGGGACAATAGTTCC | 55 | 451 |
| s-Event-R | ATTTGCTTACCCTCACGGGG | |||||
| Eubacterium hallii | Eubacterium hallii | DSM 3353T | s-Ehal-F | GTGTCGGGGCCGTATAGG | 55 | 435 |
| s-Ehal-R | GTTCGCCTCACTCTGTGAC | |||||
| Coprococcus eutactus | Coprococcus eutactus | ATCC 27759T | s-Ceut-F | CTGGAGCTTGCTCCGGCCGATTT | 55 | 656 |
| s-Ceut-R | GTCAGTAGCAGTCCAGTAAGT | |||||
| Eubacterium eligens | Eubacterium eligens | DSM 3376T | s-Eeli-F | TGTCGGGGCCCATAAGGG | 55 | 189 |
| s-Eeli-R | CATTACTGTCCGGTCAGTG | |||||
| Eubacterium rectale | Eubacterium rectale | ATCC 33656T | s-Erec-F | TTCTGACCGGTACTTAACCGTACC | 55 | 281 |
| s-Erec-R | TTTGCTCGGCTTCACAGCTTT | |||||
| Eubacterium ramulus | Eubacterium ramulus | ATCC 29099T | s-Eram-F | GAGCGTAGGCGGTCCTGC | 55 | 452 |
| s-Eram-R | GGGAAAACACATTACATGTTCTG | |||||
| Genus Blautia | Blautia producta | JCM 1471T | g-Blau-F | GTGAAGGAAGAAGTATCTCGG | 55 | 559 |
| g-Blau-R | TTGGTAAGGTTCTTCGCGTT | |||||
| Clostridium symbiosum | Clostridium symbiosum | JCM 1297T | s-Csym-F | TAAGCGCACAGTATTGCATGATA | 55 | 816 |
| s-Csym-R | CGTTACTCCCCCGTCGAG | |||||
| Fusicatenibacter saccharivorans | Fusicatenibacter saccharivorans | JCM 18507T | s-Fsac-F | CTGCATTGGAAACTGTCTGG | 55 | 388 |
| s-Fsac-R | CGTTACGGGCCGGTCATC | |||||
| Clostridium asparagiforme | Clostridium asparagiforme | DSM 15981T | s-Casp-F | GTTTTCGGATGGATTCTAGATG | 55 | 568 |
| s-Casp-R | CTCCTGCACTCTAGCTTGA | |||||
| Clostridium hathewayi | Clostridium hathewayi | DSM 13479T | s-Chath-F | CTTGACATCCCACTGAAAACAC | 55 | 162 |
| s-Chath-R | AGAGTGCCCGACTCTACTC | |||||
| Clostridium indolis subgroup | Clostridium indolis | JCM 1380T | sg-Cind-F | ACCAAGTCTTGACATCGGAATGA | 55 | 298 |
| sg-Cind-R | TTGCTCCAGATCGCTCCTT | |||||
| Ruminococcus gnavus | Ruminococcus gnavus | ATCC 29149T | s-Rgna-F | CTTGCTGGACGATGACTGAC | 55 | 288 |
| s-Rgna-R | CTCCGATTAAAGAGCGGTCAGA | |||||
| Anaerostipes caccae | Anaerostipes caccae | DSM 14662T | s-Acac-F | GTTTTCGGATGGATTTCCTATAT | 55 | 143 |
| s-Acac-R | CTTTTCACACTGAATCATGCGATT | |||||
| Roseburia intestinalis | Roseburia intestinalis | DSM 14610T | s-Rint-F | GCACAGGGTCGCATGACCT | 60 | 818 |
| s-Rint-R | AACACATTACATGTTCTGTCATC | |||||
| Coprococcus comes | Coprococcus comes | ATCC 27758T | s-Ccom-F | GTGACCGGCGTGTAATGACG | 55 | 150 |
| s-Ccom-R | CAGAGTGCCCATCCGAATTG | |||||
| Clostridium nexile | Clostridium nexile | ATCC 27757T | s-Cnex-F | GGATTTCTTCGGATTGAAGTTTTT | 55 | 517 |
| s-Cnex-R | TTTCACATCAGACTTACACAAC | |||||
| Genus Dorea | Dorea formicigenerans | DSM 3992T | g-Dor-F | GCAGCTAACGCAATAAGCAG | 55 | 165 |
| g-Dor-R | CTTCCATTACGAAGCGGTC | |||||
| Clostridium scindens | Clostridium scindens | JCM 6567T | s-Csci-F | GCATTTGGAACTGCGTGG | 55 | 387 |
| s-Csci-R | CGTTACGCGCTTTGGCATCG | |||||
| Clostridium hylemonae | Clostridium hylemonae | DSM 15053T | s-Chyl-F | AAGAGATTAGCTTGCTAAGATCAG | 55 | 145 |
| s-Chyl-R | TCTACCATGCGGTACTGAGGT | |||||
| Ruminococcus torques | Ruminococcus torques | ATCC 17756T | s-Rtor-F | CGAAGCACTTTGCTTAGA | 55 | 528 |
| s-Rtor-R | ACATCAGACTTGCCCATC | |||||
| Ruminococcus lactaris | Ruminococcus lactaris | ATCC 19176T | s-Rlac-F | GGGAGCGTAGACGGAGCA | 55 | 452 |
| s-Rlac-R | AAGCAGACATTACTCTGCCG |
Reference
- 1.Kurakawa T, Ogata K, Matsuda K, Tsuji H, Kubota H, Takada T, et al. (2015) Diversity of Intestinal Clostridium coccoides Group in the Japanese Population, as Demonstrated by Reverse Transcription-Quantitative PCR. PLoS ONE 10(5): e0126226 doi: 10.1371/journal.pone.0126226 [DOI] [PMC free article] [PubMed] [Google Scholar]
