Author response table 1.

Comparison of this study and Shi et al. study of the exosome complex.

DOI: http://dx.doi.org/10.7554/eLife.12509.093

	Leiker		DSS (Shi et al.)
filtering criteria	FDR < 0.05	FDR < 0.05, E-value < 0.00001, spectral count ≥ 3	FDR < 0.05, manual inspection
#total cross-links	625	195	211
#inter-subunit cross-links	362	43	79
#intra-subunit cross-links	263	152	132
amount of sample	40 μg		15 μg
#proteins in the sample	740 (FDR 0.1%)		44 (FDR ~1%)
sample purity	poor		good
type of exosome	cytosolic exosome (in the Rrp6 deletion background)		cytosolic exosome and nuclear exosome
database for pLink search	740 proteins		17 proteins