Abstract
The gene encoding component H of the DNA-dependent RNA polymerase (RNAP, EC 2.7.7.6) of Sulfolobus acidocaldarius has been identified by comparison of the amino acid sequence with the derived amino acid sequence of an open reading frame (ORF88) in the RNAP operon. Corresponding genes were identified in Halobacterium halobium and were cloned and sequenced from Thermococcus celer and Methanococcus vannielii. All these rpoH genes are situated between the promoters of the RNAP operons and the corresponding rpoB and rpoB2 genes. The archaeal H subunits show high sequence similarity to each other and to the C-terminal portions of the largest of four subunits shared by all three specialized nuclear RNAPs. These correlations are further evidence for the striking similarity between archaeal and eucaryal RNAP structures and transcription systems.
Full text
PDF



Images in this article
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Berghöfer B., Kröckel L., Körtner C., Truss M., Schallenberg J., Klein A. Relatedness of archaebacterial RNA polymerase core subunits to their eubacterial and eukaryotic equivalents. Nucleic Acids Res. 1988 Aug 25;16(16):8113–8128. doi: 10.1093/nar/16.16.8113. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buhler J. M., Iborra F., Sentenac A., Fromageot P. Structural studies on yeast RNA polymerases. Existence of common subunits in RNA polymerases A(I) and B(II). J Biol Chem. 1976 Mar 25;251(6):1712–1717. [PubMed] [Google Scholar]
- Eckerskorn C., Mewes W., Goretzki H., Lottspeich F. A new siliconized-glass fiber as support for protein-chemical analysis of electroblotted proteins. Eur J Biochem. 1988 Oct 1;176(3):509–519. doi: 10.1111/j.1432-1033.1988.tb14308.x. [DOI] [PubMed] [Google Scholar]
- Feng D. F., Johnson M. S., Doolittle R. F. Aligning amino acid sequences: comparison of commonly used methods. J Mol Evol. 1984;21(2):112–125. doi: 10.1007/BF02100085. [DOI] [PubMed] [Google Scholar]
- Hu N., Messing J. The making of strand-specific M13 probes. Gene. 1982 Mar;17(3):271–277. doi: 10.1016/0378-1119(82)90143-3. [DOI] [PubMed] [Google Scholar]
- Lake J. A. Tracing origins with molecular sequences: metazoan and eukaryotic beginnings. Trends Biochem Sci. 1991 Feb;16(2):46–50. doi: 10.1016/0968-0004(91)90020-v. [DOI] [PubMed] [Google Scholar]
- Leffers H., Gropp F., Lottspeich F., Zillig W., Garrett R. A. Sequence, organization, transcription and evolution of RNA polymerase subunit genes from the archaebacterial extreme halophiles Halobacterium halobium and Halococcus morrhuae. J Mol Biol. 1989 Mar 5;206(1):1–17. doi: 10.1016/0022-2836(89)90519-6. [DOI] [PubMed] [Google Scholar]
- Norrander J., Kempe T., Messing J. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis. Gene. 1983 Dec;26(1):101–106. doi: 10.1016/0378-1119(83)90040-9. [DOI] [PubMed] [Google Scholar]
- Pati U. K., Weissman S. M. Isolation and molecular characterization of a cDNA encoding the 23-kDa subunit of human RNA polymerase II. J Biol Chem. 1989 Aug 5;264(22):13114–13121. [PubMed] [Google Scholar]
- Pühler G., Leffers H., Gropp F., Palm P., Klenk H. P., Lottspeich F., Garrett R. A., Zillig W. Archaebacterial DNA-dependent RNA polymerases testify to the evolution of the eukaryotic nuclear genome. Proc Natl Acad Sci U S A. 1989 Jun;86(12):4569–4573. doi: 10.1073/pnas.86.12.4569. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pühler G., Lottspeich F., Zillig W. Organization and nucleotide sequence of the genes encoding the large subunits A, B and C of the DNA-dependent RNA polymerase of the archaebacterium Sulfolobus acidocaldarius. Nucleic Acids Res. 1989 Jun 26;17(12):4517–4534. doi: 10.1093/nar/17.12.4517. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ree H. K., Cao K. M., Thurlow D. L., Zimmermann R. A. The structure and organization of the 16S ribosomal RNA gene from the archaebacterium Thermoplasma acidophilum. Can J Microbiol. 1989 Jan;35(1):124–133. doi: 10.1139/m89-019. [DOI] [PubMed] [Google Scholar]
- Reiter W D, Palm P, Yeats S, Zillig W. Gene expression in archaebacteria: physical mapping of constitutive and UV-inducible transcripts from the Sulfolobus virus-like particle SSV1. Mol Gen Genet. 1987 Sep;209(2):270–275. doi: 10.1007/BF00329653. [DOI] [PubMed] [Google Scholar]
- Reiter W. D., Hüdepohl U., Zillig W. Mutational analysis of an archaebacterial promoter: essential role of a TATA box for transcription efficiency and start-site selection in vitro. Proc Natl Acad Sci U S A. 1990 Dec;87(24):9509–9513. doi: 10.1073/pnas.87.24.9509. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reiter W. D., Palm P., Voos W., Kaniecki J., Grampp B., Schulz W., Zillig W. Putative promoter elements for the ribosomal RNA genes of the thermoacidophilic archaebacterium Sulfolobus sp. strain B12. Nucleic Acids Res. 1987 Jul 24;15(14):5581–5595. doi: 10.1093/nar/15.14.5581. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schnabel R., Thomm M., Gerardy-Schahn R., Zillig W., Stetter K. O., Huet J. Structural homology between different archaebacterial DNA-dependent RNA polymerases analyzed by immunological comparison of their components. EMBO J. 1983;2(5):751–755. doi: 10.1002/j.1460-2075.1983.tb01495.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schägger H., von Jagow G. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem. 1987 Nov 1;166(2):368–379. doi: 10.1016/0003-2697(87)90587-2. [DOI] [PubMed] [Google Scholar]
- Sentenac A. Eukaryotic RNA polymerases. CRC Crit Rev Biochem. 1985;18(1):31–90. doi: 10.3109/10409238509082539. [DOI] [PubMed] [Google Scholar]
- Shimmin L. C., Dennis P. P. Characterization of the L11, L1, L10 and L12 equivalent ribosomal protein gene cluster of the halophilic archaebacterium Halobacterium cutirubrum. EMBO J. 1989 Apr;8(4):1225–1235. doi: 10.1002/j.1460-2075.1989.tb03496.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Valenzuela P., Bell G. I., Weinberg F., Rutter W. J. Yeast DNA dependent RNA polymerases I, II and III. The existence of subunits common to the three enzymes. Biochem Biophys Res Commun. 1976 Aug 23;71(4):1319–1325. doi: 10.1016/0006-291x(76)90799-3. [DOI] [PubMed] [Google Scholar]
- Woese C. R., Fox G. E. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci U S A. 1977 Nov;74(11):5088–5090. doi: 10.1073/pnas.74.11.5088. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Woese C. R., Kandler O., Wheelis M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576–4579. doi: 10.1073/pnas.87.12.4576. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Woychik N. A., Liao S. M., Kolodziej P. A., Young R. A. Subunits shared by eukaryotic nuclear RNA polymerases. Genes Dev. 1990 Mar;4(3):313–323. doi: 10.1101/gad.4.3.313. [DOI] [PubMed] [Google Scholar]
- Woychik N. A., Young R. A. RNA polymerase II: subunit structure and function. Trends Biochem Sci. 1990 Sep;15(9):347–351. doi: 10.1016/0968-0004(90)90074-l. [DOI] [PubMed] [Google Scholar]
- Zillig W., Klenk H. P., Palm P., Pühler G., Gropp F., Garrett R. A., Leffers H. The phylogenetic relations of DNA-dependent RNA polymerases of archaebacteria, eukaryotes, and eubacteria. Can J Microbiol. 1989 Jan;35(1):73–80. doi: 10.1139/m89-011. [DOI] [PubMed] [Google Scholar]
- Zillig W., Stetter K. O., Janeković D. DNA-dependent RNA polymerase from the archaebacterium Sulfolobus acidocaldarius. Eur J Biochem. 1979 Jun 1;96(3):597–604. doi: 10.1111/j.1432-1033.1979.tb13074.x. [DOI] [PubMed] [Google Scholar]
- Zillig W., Stetter K. O., Tobien M. DNA-dependent RNA polymerase from Halobacterium halobium. Eur J Biochem. 1978 Nov 2;91(1):193–199. doi: 10.1111/j.1432-1033.1978.tb20951.x. [DOI] [PubMed] [Google Scholar]