Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1992 Apr 1;89(7):2829–2833. doi: 10.1073/pnas.89.7.2829

Thymidine-induced mutations in mammalian cells: sequence specificity and implications for mutagenesis in vivo.

M T Kresnak 1, R L Davidson 1
PMCID: PMC48756  PMID: 1557389

Abstract

Imbalances in the intracellular nucleotide precursor pools in mammalian cells can result in the induction of mutations during the DNA replication process. By using a shuttle vector system developed in our laboratory, we have analyzed the sequence specificity of mutations induced in mouse A9 cells by exposure of the cells to a high concentration of thymidine. The target for mutagenesis in these studies was the bacterial gpt gene stably integrated into the chromosomal DNA of the mouse cells. Previous studies in this laboratory had generated a large panel of xanthine guanine phosphoribosyl-transferase (EC 2.4.2.22)-negative mutant lines that possess single-base mutations within the gpt coding sequence. This study utilized four xanthine guanine phosphoribosyltransferase-negative mutant lines to assess the frequency of mutation induced by thymidine at guanine residues in four sequence contexts: the 5' and 3' guanine residues of a GG doublet, the middle guanine residue of a GGG triplet, and the 3' guanine residue of a GGGG quartet. The results of this study demonstrate that treatment of cultured cells with a high concentration of thymidine can result in G.C----A.T transition mutations that occur preferentially at the 3' guanine residue of a run of two or more adjacent guanines. Guanine residues flanked on their 3' side by other guanine residues are severalfold less mutable by thymidine than are guanine residues flanked on their 3' side by a different base. This study demonstrates a sequence-specific mode for thymidine-induced mutations and suggests implications for mutagenesis in vivo.

Full text

PDF
2829

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Ashman C. R., Davidson R. L. Bromodeoxyuridine mutagenesis in mammalian cells is related to deoxyribonucleotide pool imbalance. Mol Cell Biol. 1981 Mar;1(3):254–260. doi: 10.1128/mcb.1.3.254. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Ashman C. R., Davidson R. L. DNA base sequence changes induced by ethyl methanesulfonate in a chromosomally integrated shuttle vector gene in mouse cells. Somat Cell Mol Genet. 1987 Sep;13(5):563–568. doi: 10.1007/BF01534497. [DOI] [PubMed] [Google Scholar]
  3. Ashman C. R., Davidson R. L. Sequence analysis of spontaneous mutations in a shuttle vector gene integrated into mammalian chromosomal DNA. Proc Natl Acad Sci U S A. 1987 May;84(10):3354–3358. doi: 10.1073/pnas.84.10.3354. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Ashman C. R., Jagadeeswaran P., Davidson R. L. Efficient recovery and sequencing of mutant genes from mammalian chromosomal DNA. Proc Natl Acad Sci U S A. 1986 May;83(10):3356–3360. doi: 10.1073/pnas.83.10.3356. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Barbacid M. ras oncogenes: their role in neoplasia. Eur J Clin Invest. 1990 Jun;20(3):225–235. doi: 10.1111/j.1365-2362.1990.tb01848.x. [DOI] [PubMed] [Google Scholar]
  6. Bernstein C., Bernstein H., Mufti S., Strom B. Stimulation of mutation in phage T 4 by lesions in gene 32 and by thymidine imbalance. Mutat Res. 1972 Oct;16(2):113–119. doi: 10.1016/0027-5107(72)90171-6. [DOI] [PubMed] [Google Scholar]
  7. Bjursell G., Reichard P. Effects of thymidine on deoxyribonucleoside triphosphate pools and deoxyribonucleic acid synthesis in Chinese hamster ovary cells. J Biol Chem. 1973 Jun 10;248(11):3904–3909. [PubMed] [Google Scholar]
  8. Bos J. L., Fearon E. R., Hamilton S. R., Verlaan-de Vries M., van Boom J. H., van der Eb A. J., Vogelstein B. Prevalence of ras gene mutations in human colorectal cancers. 1987 May 28-Jun 3Nature. 327(6120):293–297. doi: 10.1038/327293a0. [DOI] [PubMed] [Google Scholar]
  9. Bradley M. O., Sharkey N. A. Mutagenicity of thymidine to cultured Chinese hamster cells. Nature. 1978 Aug 10;274(5671):607–608. doi: 10.1038/274607a0. [DOI] [PubMed] [Google Scholar]
  10. Bridges B. A., Law J., Munson R. J. Mutagenesis in Escherichia coli. II. Evidence for a common pathway for mutagenesis by ultraviolet light, ionizing radiation and thymine deprivation. Mol Gen Genet. 1968;103(3):266–273. doi: 10.1007/BF00273698. [DOI] [PubMed] [Google Scholar]
  11. Burns P. A., Gordon A. J., Glickman B. W. Influence of neighbouring base sequence on N-methyl-N'-nitro-N-nitrosoguanidine mutagenesis in the lacI gene of Escherichia coli. J Mol Biol. 1987 Apr 5;194(3):385–390. doi: 10.1016/0022-2836(87)90668-1. [DOI] [PubMed] [Google Scholar]
  12. Davidson R. L., Broeker P., Ashman C. R. DNA base sequence changes and sequence specificity of bromodeoxyuridine-induced mutations in mammalian cells. Proc Natl Acad Sci U S A. 1988 Jun;85(12):4406–4410. doi: 10.1073/pnas.85.12.4406. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Davidson R. L., Kaufman E. R. Bromodeoxyuridine mutagenesis in mammalian cells is stimulated by thymidine and suppressed by deoxycytidine. Nature. 1978 Dec 14;276(5689):722–723. doi: 10.1038/276722a0. [DOI] [PubMed] [Google Scholar]
  14. Davidson R. L., Kaufman E. R., Dougherty C. P., Ouellette A. M., DiFolco C. M., Latt S. A. Induction of sister chromatid exchanges by BUdR is largely independent of the BUdR content of DNA. Nature. 1980 Mar 6;284(5751):74–76. doi: 10.1038/284074a0. [DOI] [PubMed] [Google Scholar]
  15. Fersht A. R. Fidelity of replication of phage phi X174 DNA by DNA polymerase III holoenzyme: spontaneous mutation by misincorporation. Proc Natl Acad Sci U S A. 1979 Oct;76(10):4946–4950. doi: 10.1073/pnas.76.10.4946. [DOI] [PMC free article] [PubMed] [Google Scholar]
  16. Gelbert L. M., Davidson R. L. A sensitive molecular assay for mutagenesis in mammalian cells: reversion analysis in cells with a mutant shuttle vector gene integrated into chromosomal DNA. Proc Natl Acad Sci U S A. 1988 Dec;85(23):9143–9147. doi: 10.1073/pnas.85.23.9143. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Goncalves O., Drobetsky E., Meuth M. Structural alterations of the aprt locus induced by deoxyribonucleoside triphosphate pool imbalances in Chinese hamster ovary cells. Mol Cell Biol. 1984 Sep;4(9):1792–1799. doi: 10.1128/mcb.4.9.1792. [DOI] [PMC free article] [PubMed] [Google Scholar]
  18. Greenspan J. A., Xu F. M., Davidson R. L. Molecular analysis of ethyl methanesulfonate-induced reversion of a chromosomally integrated mutant shuttle vector gene in mammalian cells. Mol Cell Biol. 1988 Oct;8(10):4185–4189. doi: 10.1128/mcb.8.10.4185. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol. 1983 Jun 5;166(4):557–580. doi: 10.1016/s0022-2836(83)80284-8. [DOI] [PubMed] [Google Scholar]
  20. Hirt B. Selective extraction of polyoma DNA from infected mouse cell cultures. J Mol Biol. 1967 Jun 14;26(2):365–369. doi: 10.1016/0022-2836(67)90307-5. [DOI] [PubMed] [Google Scholar]
  21. Kaufman E. R., Davidson R. L. Bromodeoxyuridine mutagenesis in mammalian cells is stimulated by purine deoxyribonucleosides. Somatic Cell Genet. 1979 Sep;5(5):653–663. doi: 10.1007/BF01542701. [DOI] [PubMed] [Google Scholar]
  22. Kaufman E. R., Davidson R. L. Bromodeoxyuridine mutagenesis in mammalian cells: mutagenesis is independent of the amount of bromouracil in DNA. Proc Natl Acad Sci U S A. 1978 Oct;75(10):4982–4986. doi: 10.1073/pnas.75.10.4982. [DOI] [PMC free article] [PubMed] [Google Scholar]
  23. Kaufman E. R. Reversion analysis of mutations induced by 5-bromodeoxyuridine mutagenesis in mammalian cells. Mol Cell Biol. 1985 Nov;5(11):3092–3096. doi: 10.1128/mcb.5.11.3092. [DOI] [PMC free article] [PubMed] [Google Scholar]
  24. Kraft R., Tardiff J., Krauter K. S., Leinwand L. A. Using mini-prep plasmid DNA for sequencing double stranded templates with Sequenase. Biotechniques. 1988 Jun;6(6):544-6, 549. [PubMed] [Google Scholar]
  25. Kresnak M. T., Davidson R. L. Effects of flanking base sequences on 5-bromodeoxyuridine mutagenesis in mammalian cells. Somat Cell Mol Genet. 1991 Jul;17(4):399–410. doi: 10.1007/BF01233065. [DOI] [PubMed] [Google Scholar]
  26. Kunkel T. A., Loeb L. A. On the fidelity of DNA replication. Effect of divalent metal ion activators and deoxyrionucleoside triphosphate pools on in vitro mutagenesis. J Biol Chem. 1979 Jul 10;254(13):5718–5725. [PubMed] [Google Scholar]
  27. Kunz B. A., Barclay B. J., Game J. C., Little J. G., Haynes R. H. Induction of mitotic recombination in yeast by starvation for thymine nucleotides. Proc Natl Acad Sci U S A. 1980 Oct;77(10):6057–6061. doi: 10.1073/pnas.77.10.6057. [DOI] [PMC free article] [PubMed] [Google Scholar]
  28. Lasken R. S., Goodman M. F. The biochemical basis of 5-bromouracil-induced mutagenesis. Heteroduplex base mispairs involving bromouracil in G x C----A x T and A x T----G x C mutational pathways. J Biol Chem. 1984 Sep 25;259(18):11491–11495. [PubMed] [Google Scholar]
  29. Lobanenkov V. V., Plumb M., Goodwin G. H., Grover P. L. The effect of neighbouring bases on G-specific DNA cleavage mediated by treatment with the anti-diol epoxide of benzo[a]pyrene in vitro. Carcinogenesis. 1986 Oct;7(10):1689–1695. doi: 10.1093/carcin/7.10.1689. [DOI] [PubMed] [Google Scholar]
  30. Mendelman L. V., Boosalis M. S., Petruska J., Goodman M. F. Nearest neighbor influences on DNA polymerase insertion fidelity. J Biol Chem. 1989 Aug 25;264(24):14415–14423. [PubMed] [Google Scholar]
  31. Meuth M., Green H. Induction of a deoxycytidineless state in cultured mammalian cells by bromodeoxyuridine. Cell. 1974 Jun;2(2):109–112. doi: 10.1016/0092-8674(74)90099-3. [DOI] [PubMed] [Google Scholar]
  32. Meuth M., L'Heureux-Huard N., Trudel M. Characterization of a mutator gene in Chinese hamster ovary cells. Proc Natl Acad Sci U S A. 1979 Dec;76(12):6505–6509. doi: 10.1073/pnas.76.12.6505. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Petruska J., Goodman M. F. Influence of neighboring bases on DNA polymerase insertion and proofreading fidelity. J Biol Chem. 1985 Jun 25;260(12):7533–7539. [PubMed] [Google Scholar]
  34. Phear G., Meuth M. The genetic consequences of DNA precursor pool imbalance: sequence analysis of mutations induced by excess thymidine at the hamster aprt locus. Mutat Res. 1989 Oct;214(2):201–206. doi: 10.1016/0027-5107(89)90164-4. [DOI] [PubMed] [Google Scholar]
  35. Phear G., Nalbantoglu J., Meuth M. Next-nucleotide effects in mutations driven by DNA precursor pool imbalances at the aprt locus of Chinese hamster ovary cells. Proc Natl Acad Sci U S A. 1987 Jul;84(13):4450–4454. doi: 10.1073/pnas.84.13.4450. [DOI] [PMC free article] [PubMed] [Google Scholar]
  36. Potter C. G. Induction of polyploidy by concentrated thymidine. Exp Cell Res. 1971 Oct;68(2):442–448. doi: 10.1016/0014-4827(71)90171-6. [DOI] [PubMed] [Google Scholar]
  37. Saiki R. K., Gelfand D. H., Stoffel S., Scharf S. J., Higuchi R., Horn G. T., Mullis K. B., Erlich H. A. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science. 1988 Jan 29;239(4839):487–491. doi: 10.1126/science.2448875. [DOI] [PubMed] [Google Scholar]
  38. Seno T., Ayusawa D., Shimizu K., Koyama H., Takeishi K., Hori T. Thymineless death and genetic events in mammalian cells. Basic Life Sci. 1985;31:241–263. doi: 10.1007/978-1-4613-2449-2_15. [DOI] [PubMed] [Google Scholar]
  39. Skoog L., Bjursell G. Nuclear and cytoplasmic pools of deoxyribonucleoside triphosphates in Chinese hamster ovary cells. J Biol Chem. 1974 Oct 25;249(20):6434–6438. [PubMed] [Google Scholar]
  40. Topal M. D., Eadie J. S., Conrad M. O6-methylguanine mutation and repair is nonuniform. Selection for DNA most interactive with O6-methylguanine. J Biol Chem. 1986 Jul 25;261(21):9879–9885. [PubMed] [Google Scholar]
  41. Xu F. M., Greenspan J. A., Davidson R. L. Replication-dependent mutagenesis by 5-bromodeoxyuridine: identification of base change and sequence effects on mutability. Somat Cell Mol Genet. 1990 Sep;16(5):477–486. doi: 10.1007/BF01233197. [DOI] [PubMed] [Google Scholar]
  42. Zarbl H., Sukumar S., Arthur A. V., Martin-Zanca D., Barbacid M. Direct mutagenesis of Ha-ras-1 oncogenes by N-nitroso-N-methylurea during initiation of mammary carcinogenesis in rats. 1985 May 30-Jun 5Nature. 315(6018):382–385. doi: 10.1038/315382a0. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES