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Saudi Pharmaceutical Journal : SPJ logoLink to Saudi Pharmaceutical Journal : SPJ
. 2016 Apr 26;24(3):258–264. doi: 10.1016/j.jsps.2016.04.012

Forgotten topological index of chemical structure in drugs

Wei Gao a,, Muhammad Kamran Siddiqui b, Muhammad Imran c, Muhammad Kamran Jamil d, Mohammad Reza Farahani e
PMCID: PMC4881174  PMID: 27275112

Abstract

A massive of early drug tests implies that there exist strong inner relationships between the bio-medical and pharmacology characteristics of drugs and their molecular structures. The forgotten topological index was defined to be used in the analysis of drug molecular structures, which is quite helpful for pharmaceutical and medical scientists to grasp the biological and chemical characteristics of new drugs. Such tricks are popularly employed in developing countries where enough money is lacked to afford the relevant chemical reagents and equipment. In our article, by means of drug molecular structure analysis and edge dividing technology, we present the forgotten topological index of several widely used chemical structures which often appear in drug molecular graphs.

Keywords: Computational medical, Forgotten topological index, Dendrimer stars, Bridge graph, Benzenoid series

1. Introduction

With rapid development of medicine manufacture, a large number of new drugs have been developed each year. Hence, it demands a tremendous amount of work to determine the pharmacological, chemical and biological characteristics of these new drugs, and such workloads become more and more fussy and clustered. It requires enough reagents equipment and assistants to test the performances and the side effects of existing new drugs. Nevertheless, in lower income countries and areas (such as certain cities and countries in South America, Africa and Southeast Asia), there is no sufficient money to defray reagents and equipment which can be employed to measure the biochemical properties. Fortunately, many previous studies have pointed that chemical and pharmacodynamics characteristics of drugs and their molecular structures are closely linked. If we calculate indicators of these drug molecular structures in view of defining the topological indices, the medical and pharmaceutical scholars could find it useful to well know their medicinal properties, which can make up the defects of medicine and chemical experiments. From this standpoint, the methods on topological index computation are very suitable and serviceable for developing countries in which they can yield the available biological and medical information of new drugs without chemical experiment hardware.

In medicine mathematical model, the structure of drug is represented as an undirected graph, where each vertex indicates an atom and each edge represents a chemical bond between these atoms. Let G be a simple graph corresponding to a drug structure with atom (vertex) set V(G) and chemical bond (edge) set E(G). A topological index defined on molecule structure G can be considered as a real-valued function f: G → R+ which maps each drug molecular structure to certain real numbers. In the past 40 years, scientists have introduced several important indices, such as Wiener index, PI index, Zagreb index and eccentric index, to measure the characters of drug molecules. There were several reports contributing to determine these topological indices of special molecular graph in chemical, nanomaterials and pharmaceutical engineering (Yan et al., 2015, Gao et al., 2016a, Gao et al., 2016b, Gao and Farahani, 2016a, Gao and Farahani, 2016b, Gao and Shi, 2015, Gao and Wang, in press-a, Gao and Wang, in press-b, Gao and Wang, 2014, Gao and Wang, 2015). The notations and terminologies used but not clearly stated in our article can be referred in Bondy and Mutry (2008).

Followed by the first and second Zagreb indices, Furtula and Gutman (2015) introduced forgotten topological index (also called F-index) which was defined as

F(G)=vV(G)d(v)3=uvE(G)(d(u)2+d(v)2),

where d(v) is denoted as the degree of vertex v (the number of vertex adjacent to vertex v). Furtula and Gutman (2015) raised that the predictive ability of forgotten topological index is almost similar to that of first Zagreb index and for the acentric factor and entropy, and both of them obtain correlation coefficients larger than 0.95. This fact implies the reason why forgotten topological index is useful for testing the chemical and pharmacological properties of drug molecular structures. Sun et al. (2014) deduced some basic nature of forgotten topological index and reported that this index can reinforce the physico-chemical flexibility of Zagreb indices. Very recently, Gao et al. (2016a) manifested the forgotten topological index of some significant drug molecular structures.

Although there have been several contributions on distance-based indices and degree-based molecular structures, the researches of forgotten topological index for certain special drug structures are still largely limited. Because of these, tremendous academic and industrial interest has been attracted to research the forgotten topological index of drug molecular structure from a mathematical point of view.

Let δ(G) and Δ(G) be the minimum and maximum degree of G, respectively. The edge set E(G) can be divided into several partitions: for any i and j, δ(G) i,j Δ(G), let Eij = {e = uv E(G)| d(v) = i, d(u) = j} and nij=|Eij|.

With continued work on Gao et al. (2016a), we get the forgotten topological index of several important chemical structures which have high frequency in drug structures.

2. Forgotten topological index of graphene G(m,n)

As a kind of two-dimensional material, graphene is a planar sheet of carbon atoms that is densely packed in a honeycomb crystal lattice, and it is the main element of certain carbon allotropes including charcoal, fullerenes and graphite, see Fig. 1.

Theorem 1

Let G(m,n) be a graphene sheet with n rows and m columns. We obtain

F(G(m,n))=18n2(5m+1)+n2(m+3)-20m-20n-20,n1(mod2)18n2(5m+1)+n2(m+3)+16m-20n-38,n0(mod2).

Proof

In terms of structure analysis, we get

|E(G(m,n))|=n2(5m+1)+n2(m+3),n1(mod2)n2(5m+1)+n2(m+3)+2m-1,n0(mod2).

In view of further calculating, we have n22=n+4, n23=4m+2n-4, and n33=|E(G(m,n))|-4m-3n. Therefore, using the definition of forgotten topological index, we obtain

F(G(m,n))=uvE(G(m,n))(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE33(32+32)=8(n+4)+13(4m+2n-4)+18(|E(G(m,n))|-4m-3n)=18n2(5m+1)+n2(m+3)-20m-20n-20,n1(mod2)18n2(5m+1)+n2(m+3)+16m-20n-38,n0(mod2)

Hence, we obtain the expected result. □

Figure 1.

Figure 1

2-Dimensional graph of graphene sheet.

3. Forgotten topological index of three family of dendrimer stars

In this section, we determine three famous infinite classes NS1[n], NS3[n] and of dendrimer stars which widely appear in the drug structures.

Theorem 2

Let n be the number of steps of growth in this type of dendrimer stars. We infer

F(NS1[n])=306·2n-47,F(NS2[n])=408·2n-70,F(NS3[n])=668·2n-134.

Proof

By observing the structures of these three dendrimer stars, we deduce its edge dividing as follows:

forNS1[n]:n23=18·2n-12,n22=9·2n+3,n13=1andn34=3;forNS2[n]:n23=24·2n-8,n22=12·2n+2andn33=1;forNS3[n]:n23=28·2n-6,n22=22·2n-7,n33=6·2nandn13=2n+1.

Therefore, according to the definition of forgotten topological index, we check

F(NS1[n])=uvE(NS1[n])(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE13(12+32)+uvE34(42+32)=8(9·2n+3)+13(18·2n-12)+10+25·3=306·2n-47.
F(NS2[n])=uvE(NS2[n])(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE33(32+32)=8(12·2n+2)+13(24·2n-8)+18=408·2n-70.
F(NS3[n])=uvE(NS3[n])(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE13(12+32)+uvE33(32+32)=8(22·2n-7)+13(28·2n-6)+20·2n+108·2n=668·2n-134.

Thus, the expected result is obtained. □

4. Forgotten topological index of polyomino chains of n-cycles and triangular benzenoid

From a mathematical point of view, polyomino system is a finite 2-connected plane graph in which each interior face (i.e. cell) is surrounded by a C4. It is an edge-connected union of cells, and more details can be found in Klarner and Polyominoes (1997) and Ghorbani and Ghazi (2010). As an example, the polyomino chains of 8-cycles can be shown in Fig. 2.

Theorem 3

Let G be a molecular graph described above. We have

F(G)=344n-22.

Proof

By means of structure analysis, we infer n22=12n+4,n23=8n, and n33=8n-3. Therefore, using the definition of forgotten topological index, we obtain

F(G)=uvE(G)(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE33(32+32)=8(12n+4)+13·8n+18(8n-3)=344n-22.

Hence, we obtain the expected result. □

Figure 2.

Figure 2

The zig-zag chain of 8-cycles.

Next, we compute forgotten topological index of triangular benzenoid molecular graph T(n). Its structure can be referred to Fig. 3.

Theorem 4

Let T(n) be a triangular benzenoid. We deduce

F(T(n))=392n2+1772n-60.

Proof

Using the edge dividing technology, we derive n22=6,n23=3n(n-1)2, and n33=6(n-1). Hence, by means of the definition of forgotten topological index, we get

F(T(n))=uvE(T(n))(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE33(32+32)=48+13·3n(n-1)2+18(6n-6)=392n2+1772n-60.

Figure 3.

Figure 3

Molecular graph of triangular benzenoid.

5. Forgotten topological index of bridge molecular structures

Let {Gi}i=1d be a set of finite pairwise disjoint molecular graphs with viV(Gi). The bridge molecular graph B(G1,,Gd)=B(G1,,Gd;v1,,vd) of {Gi}i=1d with respect to the vertices {vi}i=1d is yielded from the molecular graphs G1,,Gd in which the vertices vi and vi+1 are connected by an edge for i=1,2,,d-1. The main result of this section is determining the formulas of some degree based indices for the infinite family of drug structures of bridge molecular graph with G1,,Gd (see Fig. 4). We set Gd(H,v)=B(H,,H,v,,v) for special situations of bridge molecular graphs.

Figure 4.

Figure 4

The bridge molecular graph.

In the following context of this section, we discuss the bridge graphs in which the main parts of graphs are path, cycle and complete molecular graph, respectively.

  • Let Pn be the path with n vertices. We have dn vertices and dn-1 edges for bridge molecular graph Gd(Pn,v) (see Fig. 5 for more details). Additionally, the edge set of bridge graph Gd(Pn,v) can be divided into four partitions: n22=d(n-3)+2,n23=n12=d, and n33=d-3.

  • Let Cn be the cycle with n vertices. We have dn vertices and dn+d-1 edges for bridge molecular graph Gd(Cn,v) (see Fig. 6 for more details). Additionally, the edge set of bridge molecular graph Gd(Cn,v) can be divided into five partitions: n22=d(n-2),n23=4,n24=2d-4,n34=2 and n44=d-3.

  • Let Kn be compete molecular graph with n vertices. We have dn vertices and dn(n-1)2+d-1 edges for bridge molecular graph Gd(Kn,v) (see Fig. 7, Gd(K3,v) as an example). Additionally, the edge set of bridge molecular graph Gd(Kn,v) can be divided into five partitions: n55=n5(n-1)=d-2,n45=n4(n-1)=2 and n(n-1)(n-1)=d(n-1)(n-2)3.

Figure 5.

Figure 5

The bridge molecular graph Gd(Pn,v).

Figure 6.

Figure 6

The bridge molecular graph Gd(Cn,v).

Figure 7.

Figure 7

The bridge molecular graph Gd(K3,v).

Using the definition of forgotten topological index, we get the main result in this section which is stated as follows. We skip the detail proof here.

Theorem 5

F(Gd(Pn,v))=8dn+12d-38,
F(Gd(Cn,v))=8dn+56d-74,
F(Gd(Kn,v))=(6n2-12n+312)+d(n2-2n+76)+2d(n-1)3(n-2)3.

6. Forgotten topological index of carbon tube networks

In this section, we focus on the m×n quadrilateral section Pmn with m2 hexagons on the top and bottom sides and n2 hexagons on the lateral sides cut from the regular hexagonal lattice L, see Fig. 8 for its detailed chemical structure.

Figure 8.

Figure 8

Quadrilateral section Pmn cuts from the regular hexagonal lattice.

The tube NAmn with 2m(n+1) vertices and (3n+2)m edges is obtained by identifying two lateral sides of Pmn via identifying the vertices u0j and umj (j=0,1,,n).

Let nN be even so that n,m2. The tube NCmn of order n(2m+1) with size n(3m+12) can be yielded by identifying the top and bottom sides of the quadrilateral section Pmn in a similar way in which the vertices ui0 and uin for i=0,1,,m and vertices vi0 and vin for i=0,1,,m are identified. See Baca et al. (2015) for more details.

Theorem 6

FNAmn=54mn-16m,
FNCmn=54mn-11n.

Proof

For tube NAmn, we derive n23=4m, and n33=m(3n-2). Hence, by means of the definition of forgotten topological index, we get

F(NAmn)=uvE(NAmn)(d(u)2+d(v)2)=uvE23(22+32)+uvE33(32+32)=13·4m+18m(3n-2)=54mn-16m.

For tube NCmn, we derive n22=n,n23=2n, and n33=n(3m-52). Hence, by means of the definition of forgotten topological index, we get

F(NCmn)=uvE(NCmn)(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE33(32+32)=8n+26n+18n3m-52=54mn-11n.

7. Forgotten topological index of dendrimer stars D3[n]

In this section, we discuss an important chemical structure D3[n] which denotes the n-th growth of star dendrimer for nN{0}. See Fig. 9 for more details on the structure of this chemical molecular graph which widely appear in drug structures.

Figure 9.

Figure 9

The 2-Dimensional of the n-th growth of star dendrimer D3[n].

According to the analysis in Farahani (2013), we know that E(D3[n]) can be divided into four parts: n13=3·2n,=6(2n+1-1),n23=12(2n+1-1), and n33=9·2n-6. Hence, we directly get the following conclusion for these molecular structures.

Theorem 7

F(D3[n])=600·2n-312.

8. Forgotten topological index of two classes of benzenoid series

Finally, we aim to determine the forgotten topological index of two classes of benzenoid series.

First, we consider circumcoronene series of benzenoid Hk. When k = 1, 2, 3, the structures are presented in Fig. 10.

Figure 10.

Figure 10

The first, second and third molecular graphs H1, H2 and H3 from the circumcoronene series of benzenoid.

Thus, this family of circumcoronene homologous series of benzenoid is consisted of several copies of benzene C6 on circumference, and the more details for this structure can be referred to Fig. 11.

Theorem 8

F(Hk)=162k2-114k.

Proof

Consider circumcoronene series of benzenoid Hk for k1. It is not hard to check that|V(Hk)|=6k2 and |E(Hk)|=9k2-3k. Moreover, we deduce n33=9k2-15k+6, n23=12(k-1), and n22=6. Thus, using the definition of forgotten topological index, we infer

F(Hk)=uvE(Hk)(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE33(32+32)=48+156(k-1)+18(9k2-15k+6)=162k2-114k.

Figure 11.

Figure 11

The circumcoronene series of benzenoid Hk for k1.

Next, we consider capra-designed planar benzenoid series (the structure can be referred to Farahani and Vlad (2013) for more details). By means of intermediate results presented in Farahani and Vlad (2013), we present the forgotten topological index of Cak(C6) which is stated as follows:

Theorem 9

F(Cak(C6))=54·7k+24·3k-30.

Proof

By analyzing the molecular structure of Cak(C6), we check that the edge set of Cak(C6) can be divided into three partitions: n22=3k+3,n23=4·3k, and n33=3·7k-2·3k-3. Thus, using the definition of forgotten topological index, we infer

F(Cak(C6))=uvE(Cak(C6))(d(u)2+d(v)2)=uvE22(22+22)+uvE23(22+32)+uvE33(32+32)=8(3k+3)+52·3k+18(3·7k-2·3k-3)=54·7k+24·3k-30.

9. Conclusion

Due to the contentiously evolving viruses, a great deal of new diseases can be discovered each year. This requires us to develop more new drugs to treat new diseases. Forgotten topological index was introduced to measure the medicinal properties of new drugs which is largely popular in developing areas. In our article, in terms of drug structure analysis and edge dividing trick, we determine the forgotten topological index of certain molecular graphs which widely appear in drug structures. The conclusions achieved in our paper illustrate the promising prospects of the application for pharmacy engineering.

Acknowledgments

We thank the reviewers for their constructive comments on improving the quality of this paper. This work was supported in part by the National Natural Science Foundation of China (11401519).

Footnotes

Peer review under responsibility of King Saud University.

References

  1. Baca M., Horvathova J., Mokrisova M., Semanicova-Fenovckova A., Suhanyiova A. On topological indices of carbon nanotube network. Can. J. Chem. 2015;93(10):1157–1160. [Google Scholar]
  2. Bondy J.A., Mutry U.S.R. Spring; Berlin: 2008. Graph Theory. [Google Scholar]
  3. Farahani M.R. A new version of Zagreb index of circumcoronene series of benzenoid. Chem. Phys. Res. J. 2013;6(1):27–33. [Google Scholar]
  4. Farahani, M.R., Vlad, M.P., 2013. Computing first and second Zagreb index, first and second Zagreb polynomial of Capra-designed planar benzenoid series Can (C6). Studia Ubb Chemia, LVIII, 133–142.
  5. Furtula B., Gutman I. A forgotten topological index. J. Math. Chem. 2015;53(4):1184–1190. [Google Scholar]
  6. Gao W., Farahani M.R. Computing the reverse eccentric connectivity index for certain family of nanocone and fullerene structures. J. Nanotechnol. 2016;2016:6. Article ID 3129561. [Google Scholar]
  7. Gao W., Farahani M.R. Degree-based indices computation for special chemical molecular structures using edge dividing method. Appl. Math. Nonlinear Sci. 2016;1(1):94–117. [Google Scholar]
  8. Gao W., Shi L. Szeged related indices of unilateral polyomino chain and unilateral hexagonal chain. IAENG Int. J. Appl. Math. 2015;45(2):138–150. [Google Scholar]
  9. Gao, W., Wang, W.F., 2016. The fifth geometric–arithmetic index of bridge graph and carbon nanocones. J. Diff. Eqs. Appl. (in press).
  10. Gao, W., Wang, W.F., 2015. The eccentric connectivity polynomial of two classes of nanotubes. Chaos Solitons Fract. (in press), doi:http://dx.doi.org/10.1016/j.chaos.2015.11.035.
  11. Gao W., Wang W.F. Second atom-bond connectivity index of special chemical molecular structures. J. Chem. 2014 [Google Scholar]
  12. Gao W., Wang W.F. The vertex version of weighted wiener number for bicyclic molecular structures. Comput. Math. Meth. Med. 2015 doi: 10.1155/2015/418106. [DOI] [PMC free article] [PubMed] [Google Scholar]
  13. Gao, W., Farahani, M.R., Shi, L., 2016a. Forgotten topological index of some drug structures. Acta Med. Medit. (in press). [DOI] [PMC free article] [PubMed]
  14. Gao W., Wang W.F., Farahani M.R. Topological indices study of molecular structure in anticancer drugs. J. Chem. 2016;2016 [Google Scholar]
  15. Ghorbani M., Ghazi M. Computing some topological indices of triangular benzenoid. Digest J. Nanomater. Biostruct. 2010;5(4):1107–1111. [Google Scholar]
  16. Klarner D.A., Polyominoes S.W. In: Handbook of Discrete and Computational Geometry. Goodman J.E., O’Rourke J., editors. CRC Press; Boca Raton: 1997. pp. 225–242. (Chapter 12) [Google Scholar]
  17. Sun Y.C., Lin Z., Peng W.X., Yuan T.Q., Xu F., Wu Y.Q., Yang J., Wang Y.S., Sun R.C. Chemical changes of raw materials and manufactured binderless boards during hot pressing: lignin isolation and characterization. Bioresources. 2014;9(1):1055–1071. [Google Scholar]
  18. Yan L., Gao W., Li J.S. General harmonic index and general sum connectivity index of polyomino chains and nanotubes. J. Comput. Theor. Nanosci. 2015;12(10):3940–3944. [Google Scholar]

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