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. Author manuscript; available in PMC: 2016 Jun 6.
Published in final edited form as: Genomics. 2012 Jan 15;99(4):209–219. doi: 10.1016/j.ygeno.2012.01.002

Figure 1.

Figure 1

Characteristics of DNA methylation in LCL. A) Each dot represents a CpG site on autosomes. The X-axis indicates the distance to the nearest TSS and the y-axis is the average β value of 55 LCLs. The lines were generated by Lowess smoothing (black: all sites; green: CGI sites; red: non-CGI sites). Non-CGI sites have higher methylation than CGI sites in general no matter their distance to TSS. B) Each dot represents a pair of CpG sites on autosomes. The x-axis is the distance between the two sites and the y-axis indicates their Pearson’s correlation coefficient across 55 LCLs. The lines were generated by Lowess smoothing (blue: all pairs; red: pairs whose average β values are between 0.1 and 0.9 at both sites).