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The West Indian Medical Journal logoLink to The West Indian Medical Journal
. 2016 Apr 19;64(4):376–383. doi: 10.7727/wimj.2014.235

Denoising of Ultrasound Cervix Image Using Improved Anisotropic Diffusion Filter

Eliminación del Ruido de la Imagen Ecográfica del Cuello Uterino Usando un Filtro de Difusión Anisotrópica Mejorado

R Jemila Rose 1,, S Allwin 2
PMCID: PMC4909071  PMID: 26624591

ABSTRACT

Objective:

The purpose of this study was to evaluate an improved oriented speckle reducing anisotropic diffusion (IADF) filter that suppress the speckle noise from ultrasound B-mode images and shows better result than previous filters such as anisotropic diffusion, wavelet denoising and local statistics.

Methods:

The clinical ultrasound images of the cervix were obtained by ATL HDI 5000 ultrasound machine from the Regional Cancer Centre, Medical College campus, Thiruvananthapuram. The standardized ways of organizing and storing the image were in the format of bmp and the dimensions of 256 × 256 with the help of an improved oriented speckle reducing anisotropic diffusion filter. For analysis, 24 ultrasound cervix images were tested and the performance measured.

Results:

This provides quality metrics in the case of maximum peak signal-to-noise ratio (PSNR) of 31 dB, structural similarity index map (SSIM) of 0.88 and edge preservation accuracy of 88%.

Conclusion:

The IADF filter is the optimal method and it is capable of strong speckle suppression with less computational complexity.

Keywords: Anisotropic diffusion filter, denoising, speckle noise, ultrasound image

INTRODUCTION

Cervical cancer is the second most common type of cancer among women, with more than 250 000 deaths every year (1). The mortality rate of cervical cancer in India is more than the mortality rate of child birth [0.8 per cent vs 0.6 per cent] (2). Moreover, it is estimated that 70 to 80% of the total female population in India is found to be affected by cervical cancer (3, 4). In South India, it is expected that the death rate will increase further and it is believed that carcinoma of the uterine cervix is the major cause (5). Cervical cancer can be cured, if detected in the early stages. In India, magnetic resonance imaging (MRI) scan is preferred for identification of cervical cancer, however, the cost of the system is high; hence, identification through ultrasound can reduce the cost. But ultrasound images are highly affected by artefacts. So by introducing improved anisotropic diffusion filter denoising approach, the quality of the image can be improved.

Denoising of an image is a vital image processing task, both as a method itself, and as a part in other processes (5). There are many ways to denoise an image. The major property of an image denoising model is that it will remove noise, preserve edges and enhance maximum peak signal to noise ratio (PSNR).

In the presently offered medical imaging modalities, ultrasound imaging is considered non-invasive, practically harmless to the human body, portable, accurate and cost effective (6). These characteristics have made the ultrasound imaging the foremost prevalent diagnostic tool in nearly all hospitals around the world. Therefore, in the past few decades, considerable efforts in the field of ultrasound imaging are directed at development of signal processing techniques (7).

Ultrasound images are mainly corrupted through intrinsic artefact called “speckle” (7), which is the outcome of the constructive and destructive coherent abstraction of ultrasound resonances. These resonances or echoes can be due to device malfunctions or because of an inexperienced radiologist.

The evaluation of post-processing speckle reducing technique (8) employs the most common techniques of anisotropic diffusion (9), wavelet denoising and local statistics (10). Other approaches are proposed, together with the non-local means method. Generally, the anisotropic diffusion (11) [particularly oriented speckle reducing anisotropic diffusion – OSRAD], nonlinear multi-wavelet diffusion (NMWD) filter and other wavelet-based methods are not sufficient for a speckle removal. In the existing device, the OSRAD filter is considered the appropriate method for clinical application, based on consideration of its performance on both simulated and clinical data, and additional evaluation of its computational necessities (12). However, the OSRAD filter shows poor visual quality of images with low structural similarities.

In this paper, an improved anisotropic diffusion filter (IADF) was designed to exhibit strong speckle suppression by changing the eigenvalues, and the performance of the improved filter is evaluated. The IADF is an iterative process, everywhere kernel information is processed and regular update is carried out at the kernel set. This technique can also be accurately deployed for a large number of cases.

METHODS

The multiplicative Lee filter approximates with a linear model to get the signal estimate, and the weighting function is described previously (10). The filter projected by Kuan et al comes by transforming into a signal-dependent additive noise formulation rather than the linear approximation utilized in the Lee filter (7). An equivalent general form of the Lee filter is used, but with a weighting function described by Kuan et al (7) and it effectively controls the amount of smoothing applied to the image by the filter (13). Frost et al estimated the noisefree image by convolving the observed image with a spatiallyvarying kernel, as cited by Kuan et al (7). Yu and Acton developed a diffusion approach better suited to speckle noise removal. The diffusion partial differential equations (PDE) is employed, the variation coefficient utilized in synthetic aperture radar (SAR) filtering strategies as a signal/edge discriminator for filtering processes where the ratio of local standard deviation to mean is given (14). Detail preserving anisotropic diffusion (DPAD) filter is proposed that improves upon the operation of the SRAD filter (12).

Weickert introduced a coherence enhancing diffusion (CED) tensor-valued diffusion function, permitting the level of smoothing to vary directionally (15). The nonlinear coherent diffusion (NCD) technique of Abd-Elmoniem et al tries to discriminate between different levels of speckle, based on the similarity to completely developed speckle. Image regions closely resembling totally developed speckle are mean filtered, while those dissimilar remain unchanged (11). As with the CED technique, this approach utilizes a tensor-valued diffusion function (16), calculated as a component-wise convolution of a Gaussian kernel with the structure tensor (11). Here, the initial stage of smoothing performed is not employed; therefore, the structure matrix represents gradient information from image details of even the smallest size.

Oriented speckle reducing anisotropic diffusion

Krissian et al extended the SRAD technique to a matrix diffusion scheme (16). This permits the speckle adaptive diffusion to vary in strength within the contour and curvature directions. The enhancements of the DPAD method are utilized in this filter, like the employment of a larger window to estimate q(x,y;t) and the median estimation of q0(t). The OSRAD diffusion function c (q) relies on the Kuan et al filter (7).

The local directional variance is interrelated to the local geometry of the image. The extension of the SRAD technique to a matrix scheme is performed by finding the local directions of the gradient and curvature. This could be performed utilizing the Hessian matrix, as here, the structure tensor Tp is employed, like the CED and NCD methods. As in the CED technique, the eigenvectors of Tp are accustomed to construct the diffusion matrix, D. The eigenvalues of D, defining the strength of diffusion within the gradient and curvature directions, are given as

graphic file with name wimj-64-0376-eq01.jpg [1]
graphic file with name wimj-64-0376-eq02.jpg [2]

Where λ1 gradient direction, λ2 curvature direction, CSRAD is the SRAD diffusion [c (q)] and Ctang is a constant. Diffusion is then performed.

Improved oriented speckle reducing anisotropic diffusion

Krissian et al extended the SRAD method to a matrix diffusion scheme (16). This permits the speckle adaptive diffusion to differ in power in the contour and curvature directions. The improvements of the DPAD technique are used in this filter, such as the usage of a larger window to evaluate q(x,y;t) and the median approximation of q0(t). The OSRAD diffusion function c (q) is based on the Kuan et al filter (7).

The local directional variance is related to the local geometry of the image. The extension of the SRAD technique to a matrix scheme is achieved by finding the local directions of gradient and curvature. This can be performed using the Hessian matrix, but here, the structure tensor is used, similar to the CED and NCD methods. As in the CED method, the eigenvectors of Tp are used to construct the diffusion matrix, D. The eigenvalues of D, describing the strength of diffusion in the gradient and curvature directions, are specified as (18):

graphic file with name wimj-64-0376-eq03.jpg [3]

where

graphic file with name wimj-64-0376-eq04.jpg [4]
graphic file with name wimj-64-0376-eq05.jpg [5]

Diffusion steps

Improved anisotropic diffusion filter scheme the separate set image gradient (RxI, RyI, LxI, LyI) and apply eigenvalues to improve the performance of the similarity index and the edge preservation accuracy.

  1. Calculate the image gradient (RxI, RyI, LxI, LyI)
    graphic file with name wimj-64-0376-eq09.jpg
  2. Make the kernel window co-ordinates (X,Y)

  3. Build the Gaussian second derivatives filters (Dxx, Dyy, Dxy) DGaussyy = DGaussxx

  4. Compute the eigenvectors (Vx, Vy)

  5. Normalize the values and check whether eigenvectors are orthogonal
    graphic file with name wimj-64-0376-eq10.jpg
  6. Compute the eigenvalues (mu1, mu2)

    graphic file with name wimj-64-0376-eq11.jpg
  7. Sort eigenvalues by absolute value abs(λ1) < abs2)

  8. Check abs(mu1) < abs(mu2)

  9. Replace the value of OSRAD filter λ1 and λ2 with λ1 =cSRAD and λ2 =cDPAD mentioned as part of the proposed system

  10. Update the kernel information based on the Gaussian second order derivatives and λ1 and λ2

  11. Reconstruct the image using the updated kernel information from step 10

  12. Display the reconstructed image as denoised results

In the existing approach, λ2 =ctang is a constant, but in the proposed approach, eigenvalues are taken as the extension of DPAD. To measure the variation caused by filtering, the difference between the filtered and reference value is used. This is normalized relative to the value in the reference image.

Filter performance evaluation

The effects of filtering are calculated by application of image quality metrics. Image performance metrics are applied to the ultrasound images. The performance of each filter is evaluated quantitatively for ultrasound image with speckle noise using quality metrics such as maximum peak signal-to-noise ratio (PSNR), structural similarity index (SSIM) and figure of merit (FoM).

i) Peak signal-to-noise ratio

The PSNR indicates the level of chosen signal to the level of background noise and is computed using

graphic file with name wimj-64-0376-eq06.jpg [6]

where MSE is defined as mean square error and Inline graphic is the maximum intensity in the unfiltered images (18). The larger PSNR values show good quality image.

ii) Structural similarity

The SSIM measure is a way for assessing the similarity between two images. It is used to assess the preservation of spatial information of the pixel in the filtering process.

graphic file with name wimj-64-0376-eq07.jpg [7]

where μ1, μ2 and σ1, σ2 are the means and standard deviations of the images being compared, and σ12 is the covariance between them; is the total number of pixels. The SSIM has values in the −1 to 1 range, with unity representing structurally similar images. The SSIM lies between −1 for a bad and 1 for a good similarity between the original and despeckled images (11).

iii) Figure of merit

The FOM indicates edge pixel displacement between each filtered image Ifilt and reference Iref.

graphic file with name wimj-64-0376-eq08.jpg [8]

where Nfilt and Nref are the number of edge pixels in edge maps of Ifilt and Iref. Parameter α is set to a constant 1/9, and di is the Euclidean distance of the ith detected edge pixel and the nearest ideal edge pixel. The FOM has a range between 0 and 1, with 1 representing perfect edge preservation (11).

RESULTS

In this experiment, the clinical ultrasound images of cervix dataset obtained from the Regional Cancer Centre, Thiruvananthapuram, is shown in Fig. 1. The standardized ways of organizing and storing the image are in the format of bmp and the dimensions of 256 256. For analysis, 24 ultrasound images were tested at different times. Figure 2 shows the different levels of speckle noise such as 0.01, 0.02 and 0.03 of test image TI1 from the dataset. Figure 3 demonstrates the seven types of filter, processed from speckle noise 0.03 (level 3) ultrasound test image from the dataset. Tables 13 show the performances (PSNR, SSIM and edge preservation accuracy [FOM]) for all test images with IADF.

Fig. 1. Ultrasound cervix dataset test images (TI1-TI24).

Fig. 1

Fig. 2. Noisy input image TI1. a) Noisy input image at level 0.01, b) noisy image at level 0.02, c) noisy image at level 0.03.

Fig. 2

Fig. 3. Denoising of cervix input image (level 3) of different filters. a) Lee filter, b) Frost filter, c) Kuan filter, d) speckle reducing anisotropic diffusion (SRAD) filter, e) detail preserving anisotropic diffusion (DPAD) filter, f) oriented speckle reducing anisotropic diffusion (OSRAD) filter, g) improved anisotropic diffusion filter (IADF) (proposed).

Fig. 3

Table 1. Peak signal-to-noise ratio (PSNR) of improved anisotropic diffusion filter (IADF).

Performance matrix PSNR
Test images IADF (proposed)
TI2, TI3, TI5, TI7, TI10, TI11, TI13, TI16, TI17, TI19, TI21, TI22, TI23 31 dB
TI1, TI4, TI6, TI8, TI9, TI12, TI14, TI15, TI18, TI20, TI24 30 dB

Table 3. Edge preservation accuracy of improved anisotropic diffusion filter (IADF).

Performance matrix Edge preservation accuracy
Test images IADF (proposed)
TI6, TI10, TI13, TI14, TI19, TI20, TI21, TI24 88%
TI4, TI11, TI17, TI22 86%
TI5, TI12, TI18, TI23 84%
TI3, TI9, TI16 82%
TI1, TI2, TI7, TI8, TI15 81%

Table 2. Structural similarity of improved anisotropic diffusion filter (IADF).

Performance matrix SSIM
Test images IADF (proposed)
TI5, TI6, TI10, TI11, TI12, TI16, TI17, TI20, TI21 0.88
TI3, TI8, TI14, TI18, TI23, TI24 0.85
TI2, TI7, TI13, TI22 0.84
TI4, TI9, TI15, TI19 0.82
TI1 0.80

SSIM: structural similarity index map

From Tables 13, there are a few observations. The outcome shows that best performance for PSNR (31 dB) and SSIM (0.88) were achieved, respectively from the test images of TI2, TI3, TI5, TI7, TI10, TI11, TI13, TI16, TI17, TI19, TI21, TI22, TI23 and TI5, TI6, TI10, TI11, TI12, TI16, TI17, TI20, TI21. Similarly, edge preservation accuracy (88%) was obtained from the test images of TI6, TI10, TI13, TI14, TI19, TI20, TI21, TI24, respectively.

These observations show the IADF achieved best results for all cases. Some images show the predominant results for proposed filter and as an average, the best overall filter performances were obtained by the combination of all the datasets. Overall, experimental results proved that the IADF suppresses the speckle noise higher than previous filters. Figure 4 compares the rate of different filters with IADF. Figure 5 compares the structural similarity ratio of different filters with IADF. It is noted that IADF shows better performance. Figure 6 compares the accuracy rate of different filters with IADF, and IADF shows better performance in all cases.

Fig. 4. Extracted maximum peak signal-to-noise ratio (PSNR) rate of different filters.

Fig. 4

Fig. 5. Extracted maximum structural similarity index map (SSIM) value of different filters.

Fig. 5

Fig. 6. Extracted maximum edge preservation accuracy of different filters.

Fig. 6

In the case of improved anisotropic diffusion, the filter suppresses the speckle more but the similarity between the two images shows poor performance. Table 4 shows PSNR values of all 24 images and the filters. Table 5 shows structural similarity between all the filters, while Table 6 shows the edge preservation accuracy of all filters. The low PSNR rate of 30 dB and SSIM (0.80) is noted in some test cases. The results also show low edge preservation accuracy (81%) noted in some test cases. Separate set of image gradient and eigenvalues improve the accuracy rate of PSNR, SSIM and edge preservation accuracy.

Table 4. Quality matrix of peak signal-to-noise ratio (PSNR).

Performance matrix PSNR (dB)
Test images (TI) Lee Frost Kuan DPAD SRAD OSRAD IADF (proposed)
TI1 23.0164 22.3975 22.4512 22.341 22.2361 24.1209 30.023
TI2 22.8471 21.7312 21.4012 23.1756 23.1765 23.1771 30.5114
TI3 21.4045 20.1289 21.145 24.1472 24.1231 24.1785 30.7482
TI4 22.0164 21.3975 21.4512 21.341 21.2361 21.1209 30.024
TI5 22.0271 21.6312 21.1432 23.1435 23.1765 23.1771 30.7414
TI6 20.4124 20.1354 21.132 24.1874 24.1681 24.4532 30.2482
TI7 22.0164 21.3975 21.4512 21.341 22.2361 23.1209 30.7812
TI8 21.8471 20.1354 20.4012 22.1756 22.1765 22.1771 30.3114
TI9 20.4045 21.3975 20.145 23.1472 23.1231 23.1785 30.4578
TI10 22.0164 20.7312 21.4512 21.341 21.2361 23.1209 30.523
TI11 20.4045 19.1289 20.4012 22.1756 22.1765 22.1771 30.5123
TI12 21.8471 21.3975 21.145 23.1472 23.1231 24.1785 30.2873
TI13 22.0164 20.7312 20.4012 22.1756 22.1765 22.1771 30.5123
TI14 21.8471 19.1289 22.4512 21.341 21.2361 23.1209 30.0451
TI15 20.4045 20.7312 20.4012 22.1756 22.1765 22.1771 30.3451
TI16 21.8471 21.3975 21.4012 22.1756 23.1231 24.1209 30.8482
TI17 23.0164 20.7312 20.4012 22.1756 22.1765 22.1771 30.5123
TI18 21.8471 20.7312 21.145 20.1472 22.2361 22.1771 30.023
TI19 21.4045 19.1289 20.145 22.341 22.1765 24.1785 30.5123
TI20 22.8471 22.3975 20.4012 22.1756 23.1765 24.1209 30.3114
TI21 21.8471 20.7312 21.4512 24.1472 22.1765 23.1785 30.5123
TI22 21.8471 21.7312 20.4012 22.1756 24.1231 22.1771 30.7482
TI23 23.0164 20.7312 22.4512 23.1756 22.1765 23.1785 30.8482
TI24 22.8471 20.1289 21.145 22.1756 22.2361 23.1771 30.3114

DPAD: detail preserving anisotropic diffusion; SRAD: speckle reducing anisotropic diffusion; OSRAD: oriented speckle reducing anisotropic diffusion; IADF: improved anisotropic diffusion filter

Table 5. Quality matrix of structural similarity index map (SSIM).

Performance matrix SSIM
Test images (TI) Lee Frost Kuan DPAD SRAD OSRAD IADF (proposed)
TI1 0.8738 0.8517 0.8281 0.8424 0.8704 0.1265 0.8001
TI2 0.3641 0.4134 0.6885 0.2563 0.2009 0.0781 0.8445
TI3 0.821 0.9293 0.5656 0.5986 0.4897 0.0563 0.8513
TI4 0.8602 0.8193 0.8136 0.7107 0.8246 0.8153 0.8217
TI5 0.0683 0.0703 0.9266 0.1404 0.0939 0.5298 0.878
TI6 0.442 0.4859 0.2113 0.4409 0.4265 0.3943 0.8753
TI7 0.3641 0.4134 0.6885 0.2563 0.2009 0.0781 0.8415
TI8 0.821 0.9293 0.5656 0.5986 0.4897 0.0563 0.8513
TI9 0.8602 0.0703 0.8136 0.7107 0.8246 0.8153 0.8247
TI10 0.0683 0.4859 0.9266 0.1404 0.0939 0.5298 0.878
TI11 0.442 0.4134 0.2113 0.4409 0.4265 0.3943 0.8753
TI12 0.3641 0.9293 0.6885 0.2563 0.2009 0.0781 0.8753
TI13 0.3641 0.8193 0.5656 0.5986 0.4897 0.0563 0.8465
TI14 0.821 0.0703 0.9266 0.7107 0.4265 0.8153 0.8513
TI15 0.8602 0.4134 0.2113 0.1404 0.8246 0.5298 0.8247
TI16 0.0683 0.4859 0.8281 0.4409 0.0939 0.3943 0.878
TI17 0.442 0.9293 0.6885 0.8424 0.4265 0.5298 0.8753
TI18 0.3641 0.8193 0.5656 0.2563 0.4897 0.3943 0.8513
TI19 0.821 0.0703 0.8136 0.5986 0.8246 0.0781 0.8247
TI20 0.8602 0.4859 0.2113 0.7107 0.0939 0.8153 0.878
TI21 0.0683 0.4134 0.6885 0.5986 0.4897 0.5298 0.8753
TI22 0.442 0.4859 0.5656 0.5986 0.0939 0.3943 0.8415
TI23 0.821 0.0703 0.6885 0.2563 0.4265 0.0781 0.8513
TI24 0.8602 0.8193 0.8281 0.1404 0.8246 0.8153 0.8513

DPAD: detail preserving anisotropic diffusion; SRAD: speckle reducing anisotropic diffusion; OSRAD: oriented speckle reducing anisotropic diffusion; IADF: improved anisotropic diffusion filter

Table 6. Quality matrix of figure of merit (FOM).

Performance matrix Edge preservation accuracy (%)
Test images (TI) Lee Frost Kuan DPAD SRAD OSRAD IADF (proposed)
TI1 0.6531 0.7197 0.6377 0.4227 0.1506 0.7925 0.8111
TI2 0.6215 0.6803 0.6089 0.3807 0.1359 0.7294 0.8148
TI3 0.6286 0.6527 0.5688 0.3576 0.1231 0.746 0.8243
TI4 0.6993 0.7375 0.6384 0.5144 0.3118 0.7735 0.8641
TI5 0.7003 0.7375 0.677 0.5525 0.3272 0.7854 0.8439
TI6 0.6929 0.7575 0.6751 0.5385 0.3438 0.7889 0.8845
TI7 0.6531 0.7197 0.6751 0.3807 0.1506 0.7925 0.8111
TI8 0.6215 0.6803 0.6377 0.4227 0.1359 0.7294 0.8148
TI9 0.6286 0.6527 0.6089 0.3807 0.1231 0.746 0.8243
TI10 0.6531 0.7197 0.5688 0.3576 0.3118 0.7925 0.8811
TI11 0.6993 0.7375 0.6384 0.5144 0.3118 0.7735 0.8641
TI12 0.7003 0.7553 0.677 0.5525 0.3272 0.7854 0.8439
TI13 0.6929 0.7575 0.6751 0.5385 0.3438 0.7889 0.8845
TI14 0.6531 0.7197 0.6089 0.3576 0.1506 0.7925 0.8811
TI15 0.6929 0.6803 0.6377 0.4227 0.1359 0.7294 0.8148
TI16 0.6215 0.6527 0.6089 0.3807 0.1231 0.746 0.8243
TI17 0.6286 0.6803 0.5688 0.3576 0.3118 0.7735 0.8631
TI18 0.6993 0.7375 0.6384 0.5144 0.3272 0.7854 0.8439
TI19 0.7003 0.7553 0.677 0.5525 0.3272 0.7889 0.8845
TI20 0.6929 0.7575 0.6751 0.5385 0.3438 0.7294 0.8758
TI21 0.6993 0.7375 0.6384 0.5144 0.3438 0.7889 0.8845
TI22 0.7003 0.7553 0.6384 0.5385 0.3118 0.7735 0.8641
TI23 0.6929 0.7575 0.677 0.5525 0.3272 0.7854 0.8439
TI24 0.6993 0.7553 0.6751 0.5385 0.3438 0.7889 0.8845

DPAD: detail preserving anisotropic diffusion; SRAD: speckle reducing anisotropic diffusion; OSRAD: oriented speckle reducing anisotropic diffusion; IADF: improved anisotropic diffusion filter

DISCUSSION

In this work, we presented an efficient IADF that gives better results, and this approach represents some real time performance for denoising an ultrasound image. The proposed approach provides the quality metrics of 31 dB, SSIM of 0.88 and also the edge preservation accuracy of 88%. Additionally, our approach shows better improvement in terms of SSIM with the original image reconstructed.

Further investigations into the nature and uses of IADF are analysed. The computational efficiency and robustness of the proposed approach is compared with several state-of-the-art filters in ultrasound images. The experimental results verify that the proposed technique achieves the highest accuracy among all the strategies under comparison. Lastly, the IADF is tested with mostly real time ultrasound images and shows better improvements with less time for execution.

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