Abstract
X-linked lymphoproliferative disease (XLP-1) is an often-fatal primary immunodeficiency associated with the exuberant expansion of activated CD8+ T cells following Epstein-Barr virus (EBV) infection. XLP-1 is caused by defects in SAP, an adaptor protein that modulates T cell receptor (TCR)-induced signaling. SAP-deficient T cells exhibit impaired TCR restimulation-induced cell death (RICD) and diminished TCR-induced inhibition of diacylglycerol kinase alpha (DGKα), leading to increased diacylglycerol metabolism and decreased signaling through Ras and PKCθ. Here, we show that down-regulation of DGKα activity in SAP-deficient T cells restores diacylglycerol signaling at the immune synapse and rescues RICD via induction of the pro-apoptotic proteins NUR77 and NOR1. Importantly, pharmacological inhibition of DGKα prevents the excessive CD8+ T cell expansion and IFNγ production that occur in Sap-deficient mice following Lymphocytic Choriomeningitis Virus infection without impairing lytic activity. Collectively, these data highlight DGKα as a viable therapeutic target to reverse the life-threatening EBV-associated immunopathology that occurs in XLP-1 patients.
Introduction
X-linked lymphoproliferative disease (XLP-1) is a heritable immune disorder caused by germline mutations in the SH2D1A gene, which encodes the Signaling Lymphocytic Activation Molecule (SLAM)-associated protein (SAP) (1). SAP is a small SH2 domain-containing adaptor primarily expressed in T, natural killer (NK) and invariant NKT (iNKT) cells (1). XLP-1 is best recognized for the increased susceptibility of affected males to develop overwhelming lymphoproliferation following primary Epstein Barr virus (EBV) infection (2). Also known as fulminant infectious mononucleosis (FIM), this lymphoproliferative process is characterized by the massive accumulation of activated CD8+ T cells, which infiltrate multiple organs and inflict severe tissue damage. FIM is the most common and clinically challenging manifestation of XLP-1, with up to 65% of patients dying despite the use of chemo-immunotherapy (3). Accordingly, alternative and more effective treatment strategies are sorely needed for XLP-1 patients who develop FIM.
T lymphocytes derived from XLP-1 patients exhibit multiple functional defects, including reduced cytotoxic activity (4) and impaired restimulation-induced cell death (RICD) (5). RICD is a self-regulatory apoptosis program triggered by repeated TCR stimulation that maintains peripheral immune homeostasis by constraining the accumulation of activated T cells (6). A similar death defect is present in the activated T cells of Sh2d1a−/− mice (7). It is proposed that defective RICD, combined with impaired clearance of EBV-infected B cells, sustains and amplifies the expansion of activated T cells that typifies FIM (5, 6).
SAP binds to immunotyrosine-based switch motifs (ITSMs) within the cytoplasmic domains of the SLAM-family receptors (SLAM-Rs) (8), thus competing with the binding of SH2 domain containing inhibitory lipid and tyrosine phosphatases such as SHIP and SHP-1/SHP-2 (9). In addition, SAP facilitates recruitment of kinases such as FynT and Lck to SLAM-Rs to promote optimal signaling within T, NK and NKT cells (10, 11). Indeed, RICD resistance in XLP patient T cells results in part from weak TCR signaling associated with excess SHP-1 activity and defective recruitment of Lck to the NTB-A receptor, which colocalizes with the TCR (5, 11). Although SAP links SLAM-R signaling to several downstream functions via activation of Src-family kinases (e.g. IL-4 secretion (12), iNKT cell development (13)), this signaling axis is not the only pathway in which SAP is involved for signal regulation. For example, the requirement for SAP in the provision of CD4+ T cell-mediated “help” for B cell differentiation is Fyn-independent (14). To fully understand XLP-1 pathogenesis and develop more effective therapeutic interventions, the mechanistic characterization of signaling molecules involved in these “alternative” SAP-dependent signaling pathways is imperative.
We recently observed that following TCR stimulation, SAP selectively inhibits diacylglycerol kinase-alpha (DGKα) without requiring FynT or Lck (15). DGKα and DGKζ phosphorylate diacylglycerol (DAG) to generate phosphatidic acid, thereby modulating TCR signal strength by regulating DAG levels and downstream biochemical events (16, 17). In activated T cells, silencing SAP expression results in persistently active DGKα and thus impaired DAG signaling, leading to reduced-mediated PKCθ membrane recruitment, NFAT and ERK1/2 activation and interleukin 2 (IL-2) production (15). These data collectively suggest that upon antigen stimulation, SAP inhibits DGKα activity to facilitate optimal DAG accumulation and full TCR signal strength, ultimately leading to cell activation.
Because TCR signal strength directly correlates with RICD sensitivity (18), we hypothesized that the reduced RICD of XLP-1 T cells might be linked to deregulation of DGKα in the absence of functional SAP. Consistent with this notion, we show herein that the loss of SAP in T cells results in reduced DAG polarization to the immune synapse (IS) and impaired TCR-induced DAG-dependent TCR signaling. Both of these events are due to persistent DGKα activity and contribute to RICD resistance. Consequently, the inhibition of DGKα in XLP-1 T cells restored DAG signaling and RICD by rescuing IS architecture and triggering a specific DAG-dependent apoptotic process mediated by the orphan receptors NR4A1 (NUR77) and NR4A3 (NOR1). Strikingly, in vivo inhibition of DGKα activity reduced the excessive CD8+ T cell accumulation and IFNγ production that occur in Sh2d1a−/− mice infected with Lymphocytic Choriomeningitis Virus (LCMV), a murine model of FIM. Our findings illuminate the SAP/DGKα signaling axis as a key regulator of TCR-induced apoptosis. Importantly, these results highlight DGKα as a novel, druggable target for treating FIM by promoting RICD, reducing the accumulation of pathogenic, activated CD8+ T cells and thus mitigating the life-threatening immunopathology that often occurs in EBV-infected XLP-1 patients.
Results
DGKα inhibition rescues RICD in SAP-deficient T cells
To investigate whether reduced DAG signaling contributes to the T cell-driven pathologic manifestations of XLP-1, we examined whether silencing or inhibition of DGKα could restore the sensitivity of XLP-1 T cells to RICD. SAP-deficient XLP-1 T cells exhibit reduced RICD relative to control T cells following stimulation with increasing concentrations of the agonistic anti-CD3 Ab OKT3 (5) (Fig 1A–B). Remarkably, this defect in RICD was substantially rescued by the siRNA-mediated silencing of DGKα (Fig. 1A–C), or by pre-treatment with the DGKα inhibitors R59949 (Fig. 1D–E) or R59022 (Fig. 1F) (19). The rescue in RICD obtained upon DGKα inhibition was likely due to the induction of apoptosis, as indicated by an increased percentage of AnnexinV+ cells (Fig. 1G). Conversely, the inhibition or silencing of DGKα had little effect on RICD in activated T cells from healthy subjects (Fig. 1–2).
As patient-derived cells were limited, we repeated these assays using siRNA to knock down SAP expression in activated T cells from healthy donors (Fig. 2) (5). In agreement with our prior findings, SAP-silenced cells exhibited defective RICD that was rescued by concomitant silencing of DGKα (Fig. 2A–B), or by treatment with the DGKα inhibitors R59949 (Fig. 2C) or R59022 (Fig. 2D). This restoration of RICD in SAP-silenced T cells was associated with enhanced apoptosis, as indicated by increased AnnexinV staining (Fig. 2E). For other isoforms expressed in T cells, silencing of DGKζ, but not DGKδ, also partially rescued RICD in SAP silenced cells (Fig. S1A–D). Conversely, overexpression of DGKα or DGKζ conferred partial resistance to RICD in normal T cells (Fig. S1E–F). These findings suggest a link between the RICD resistance of SAP-deficient lymphocytes and unrestrained DAG depletion caused by enhanced DGK activity. To explore this further, we supplemented cultures with the DAG analogue 1,2-dioctanoyl-sn-glycerol (C8-DAG), which is rapidly incorporated into the cell membrane and triggers DAG-dependent signaling (20). Indeed, C8-DAG treatment markedly enhanced RICD in SAP-silenced but not control T cells (Fig. 2F). Collectively, these data demonstrate that excessive DGKα activity contributes to RICD resistance in SAP-deficient T cells, and that this process can be reversed by inhibition of DGKα. These data suggest that SAP promotes TCR signal strength and RICD sensitivity by attenuating DAG metabolism carried out by DGKα in activated T cells (Fig. 2G).
Inhibition of DGKα rescues defective DAG polarization and signaling at the IS in SAP-deficient cells
DAG generation and polarization at the IS are required for TCR-induced cellular responses (21). To investigate whether the deregulated DGKα activity caused by SAP deficiency affects DAG polarization toward the IS, we imaged DAG localization using a PKCθ-CRD-based biosensor (22). Following activation by superantigen-loaded Raji B cells, we observed that PKCθ-CRD polarization to the IS was strongly reduced in SAP-silenced versus control Jurkat cells (Fig. 3A–D). In contrast, co-silencing of DGKα (Fig. 3A, B) or pre-treatment with the DGK inhibitor R59949 (Fig. 3C, D) restored PKCθ-CRD polarization in SAP-silenced T cells. Consistent with the finding that DGKα shapes the DAG gradient at the IS (23), DAG polarization was also reduced in SAP-expressing, DGKα-silenced Jurkat cells (Fig. 3A, B).
Polarized DAG signaling triggers F-actin polymerization and microtubule organizing center (MTOC) orientation (24, 39). Consistent with reduced DAG polarization, SAP-silenced T cells exhibited a strong defect in F-actin accumulation at, and MTOC orientation toward, the IS upon contact with superantigen-loaded Raji cells (Fig. 3E–J). Again, silencing or inhibition of DGKα partially restored these processes (Fig. 3E–J). These findings indicate that SAP regulates the architecture of the IS by inhibiting DGKα, thereby limiting DAG metabolism locally.
We next investigated whether inhibition of DGKα restores DAG-mediated signaling downstream of the TCR in SAP-silenced primary human T cells. PKCθ and RasGRP1 are recruited to the IS in a DAG-dependent manner (25, 26), and are required for induction of RICD (27, 28). Consistent with our hypothesis, SAP-silenced primary T cells exhibited defective recruitment of PKCθ and RasGRP1 to the IS, which was fully restored upon DGKα silencing (Fig. 4A–B, E–F) or pharmacological inhibition (Fig. 4C–D, G–H). Considering inhibition of DGKα also rescues defective ERK1/2 activation in SAP-deficient T cells (15), these data underscore the importance of the SAP/DGKα axis in regulating DAG-dependent signaling.
To test if inhibition of DGKα rescues RICD in SAP-deficient T cells by restoring specific DAG-mediated signaling pathways, we examined whether the rescue of RICD requires the activity of PKCθ or RasGRP1. Silencing of PKCθ (Fig. 5A) or RasGRP1 (Fig 5B) reduced RICD in control siRNA transfected T cells, and completely abrogated the rescue of RICD in SAP and DGKα siRNA transfected cells. Moreover, pharmacological inhibition of PKC or MEK/ERK enzymatic activity also prevented the restoration of RICD noted following DGKα silencing in SAP-deficient T cells (Fig. S2).
TCR activation stimulates DAG-dependent induction of IL-2 and the high-affinity IL-2 receptor CD25 (29, 30), which are both required for RICD (31). Indeed, inhibition or silencing of DGKα restored induction of CD25 in SAP-silenced T cells after TCR restimulation, and a similar trend was observed with IL-2 expression (Fig. 5C–E). These findings further establish the SAP/DGKα signaling axis as a critical regulator of DAG signaling potency. Collectively, these findings underscore the vital role of SAP-dependent inhibition of DGKα in sustaining DAG signaling, leading to the activation of PKCθ and Ras-ERK and RICD (Fig. 5F).
NUR77 and NOR1 mediate the rescue of RICD that is induced by DGKa inhibition in SAP-deficient T cells
We next investigated the mechanism by which the enhancement of DAG signaling obtained following inhibition of DGKα restores RICD sensitivity in SAP-deficient T cells. We previously showed that in SAP-deficient T cells, TCR-induced expression of key pro-apoptotic genes such as FASLG and BCL2L11 is impaired (5). Surprisingly, we observed that silencing or inhibition of DGKα failed to rescue FASLG or BCL2L11 expression following TCR restimulation of SAP-silenced T cells (Fig. S3A, B). Similarly, DGKα blockade failed to restore the induction of all three major isoforms of BIM protein (extra-long EL, long L, and short S), as well as full-length and soluble FASL protein in SAP-silenced and XLP-1 patient T cells following restimulation (Fig. S3C–E). These observations imply that DGKα inhibition does not restore all SAP-dependent, pro-apoptotic effector functions that contribute to RICD sensitivity.
Instead, we found that SAP-deficient T cells exhibit a previously unrecognized defect in TCR restimulation-induced upregulation of NR4A1 (NUR77) and NR4A3 (NOR1), two nuclear receptors involved in negative selection of thymocytes and RICD of mature T cells (32). Importantly, DGKα silencing or inhibition selectively restored TCR-dependent induction of both NR4A1 and NR4A3 in SAP-silenced activated T cells (Fig. 6A–D). DGKα inhibition also partially rescued NUR77 and NOR1 protein induction in XLP-1 T cells following TCR restimulation (Fig. 6E). Upon TCR engagement, NUR77 and NOR1 proteins are phosphorylated by the ERK1/2-regulated 90 kD ribosomal S6 kinase (RSK), triggering the intrinsic apoptosis pathway (33). Indeed, the RSK-specific inhibitor SL0101 (34) significantly reduced RICD in control T cells, confirming that phosphorylation of NUR77 and NOR1 is an important component of RICD execution (Fig 6F–H). Importantly, SL0101 significantly blunted the RICD rescue triggered by DGKα inhibition in XLP-1 T cells, as well as in SAP/DGKα-silenced T cells (Fig 6F–H). These data indicate that the rescue of RICD afforded by DGKα blockade in SAP-deficient T cells is dependent on RSK activity. Moreover, concomitant knockdown of NUR77 and NOR1 reduced the rescue of RICD induced by DGKα inhibition in XLP-1 T cells (Fig. 6I–K). Altogether, these observations indicate that inhibition of DGKα boosts RICD in SAP-deficient T cells in part by selectively restoring TCR-induced upregulation and RSK-dependent phosphorylation of NUR77 and NOR1 (Fig. 6L).
DGKα inhibition reduces CD8+T cell accumulation and activation in LCMV-infected Sh2d1a−/− mice
Defective RICD is thought to contribute to the aberrant T cell activation and accumulation that occur in EBV-infected XLP-1 patients (35). The demonstration that DGKα silencing or inhibition sensitizes SAP-deficient lymphocytes to RICD in vitro prompted us to assess whether DGKα inhibition might influence T cell-mediated immunopathology in vivo. Towards this end, we used a murine model in which Sh2d1a−/− mice are infected with LCMV. In this model, Sh2d1a−/− mice develop many of the cardinal manifestations of FIM, including CD8+ T cell expansion, pro-inflammatory cytokine production and tissue infiltration (36, 37). For these experiments, wild-type (WT; Sh2d1a+/+) or Sh2d1a−/− mice were infected with LCMV-Armstrong and 4 days later, treated with vehicle or R59022 (38). On day 8, the peak of the anti-viral T cell response, mice were euthanized and evaluated for hyper-inflammation.
Following LCMV infection, both WT and Sh2d1a−/− mice developed marked and comparable splenomegaly (Fig 7A–B) that was associated with an increase in the absolute number of total splenocytes (Fig. 7C). Examination of splenocyte immunophenotype revealed a significant increase in the percentage and absolute number of total as well as LCMV-specific (gp33+) CD8+ T cells, the majority of which exhibited an activated CD44+ phenotype (Fig. 7D–I). Treatment of LCMV-infected WT mice with R59022 did not significantly affect any of these parameters (Fig. 7). Conversely, R59022 treatment of LCMV-infected Sh2d1a−/− mice appeared to lessen organomegaly (Fig. 7A–B) and decrease the total splenic lymphocyte count (Fig. 7C). Although R59022 treatment did not affect the percentage of activated splenic CD8+ T cells in either mouse strain, it did induce a significant decrease in the number of total as well as LCMV-specific CD8+ T cells selectively in the Sh2d1a−/− animals (Fig. 7D–I).
Compared to WT animals, LCMV-infected Sh2d1a−/− mice also exhibited a trend toward higher serum IFNγ levels (Fig. 8A) and greater degrees of tissue inflammation (Fig 8B–D). To evaluate whether DGKα inhibition affected CD8+ T cell functions such as cytokine production or degranulation, splenocytes from LCMV-infected mice were cultured directly ex vivo with the MHC class I restricted LCMV peptide gp33 and examined for expression of intracellular TNFα, IFNγ and CD107α. Interestingly, R59022 treatment did not affect the percentage of CD8+ T cells that secreted cytokines (TNFα or IFNγ) or degranulated (CD107α exposure) in LCMV-infected WT or Sh2d1a−/− mice (Fig 8E–F). In fact, R59022 treatment actually enhanced the cytolytic activity of Sh2d1a−/− CD8+ T cells against autologous B cell targets in vitro (Fig. S5). However, such treatment did reduce the absolute number of cytokine producing and degranulating cells only in the Sh2d1a−/− animals (Fig. 8G). Consistent with these findings, only R59022-treated Sh2d1a−/− mice exhibited a significant reduction in the serum IFNγ levels (Fig 8A). Finally, R59022 treatment significantly reduced the number and size of hepatic inflammatory infiltrates in LCMV-infected Sh2d1a−/− but not WT mice (Fig 8B–D). These findings collectively indicate that inhibition of DGKα selectively decreases the magnitude of the CD8+ T cell effector pool in LCMV-infected Sh2d1a−/− mice. DGKα inhibition had no adverse effects on viral clearance, as LCMV was efficiently cleared from WT and Sh2d1a−/− mice by day 8 with or without R59022 treatment (Fig. S6). These pre-clinical data suggest that pharmacologic inhibition of DGKα might reduce the accumulation of aberrantly activated CD8+ T cells and subsequent hypercytokinemia and tissue inflammation that occur in EBV-infected XLP-1 patients, without impairing CD8+ T cell activity or viral clearance.
One major limitation of this study is its focus on the role of the SAP/DGKα axis strictly in T cells. It does not address the putative role of DGKα in other SAP-deficient immune cells such as NK or NKT cells, which also likely contribute to the development of various XLP-1 manifestations. In addition, although LCMV-infection of Sh2d1a−/− mice is a widely used murine model of FIM, it does not fully recapitulate the pathogenesis of EBV infection in humans. Finally, the translation of these findings to the clinic will require the development and characterization of novel, clinical-grade DGKα specific inhibitors. Nonetheless, our data clearly provide proof of concept that DGKα may be a novel drug target for treating XLP-1-associated FIM.
Discussion
Our results demonstrate that inhibition of DGKα restores sensitivity to RICD in SAP-deficient T cells and reduces hyper-inflammation in LCMV-infected Sh2d1a−/− mice. These data support the hypothesis that in SAP-deficient T cells, persistent DGKα activity increases DAG metabolism at the IS, thus reducing DAG signaling and RICD sensitivity, and underscore the role of SAP in modulating DGKα activity (15). In SAP-expressing T cells, further inhibition of DGKα only marginally influenced sensitivity to RICD in vitro, and did not dampen the LCMV-induced CD8+ T cell response of wild-type mice in vivo.
Our finding that inhibition of DGKα restores proper IS organization in SAP-deficient T cells indicates that SAP, through regulation of DGKα, controls DAG polarization at the IS, thus promoting F-actin polymerization and MTOC orientation. Indeed, DGKα is recruited to the pSMAC, where it shapes the DAG gradient responsible for the recruitment of novel PKC isoforms (ε, η and θ), which control MTOC polarization and actin polymerization (Fig. 3) (23, 39). DGKα inhibition also partially rescued impaired cytolytic activity in SAP-deficient CTLs (Fig. S5), further highlighting the link between SAP-dependent inhibition of DGKα and IS function (4). Altogether, these data indicate that SAP-mediated negative regulation of DGKα controls IS structural organization and function by regulating the TCR-induced gradient of DAG.
Both DGKα and DGKζ regulate TCR-induced DAG-signaling (16, 17). Consistently, inhibition or overexpression of either isoform rendered T cells more or less sensitive to RICD, respectively, confirming that both isoforms regulate DAG signalling in this context (Fig S1). Accordingly, administration of exogenous DAG partially rescued the defective RICD in SAP-deficient T cells (Fig 2F). However, only DGKα is regulated by SAP and shapes the DAG gradient at the IS (15, 23). We speculate that DGKα, which co-localizes with F-actin at the pSMAC, regulates the DAG gradient and F-actin polymerization at the IS, whereas DGKζ, which is more evenly distributed in the IS, metabolizes most of DAG generated there, consistent with proposed models (23, 40). Notably silencing of DGKδ, which is highly expressed in T cells, did not affect RICD, underscoring the specific roles of DGKα and DGKζ in regulating the DAG pool relevant for signaling and RICD onset.
Our finding that inhibition of DGKα restored RasGRP1 and PKCθ recruitment to the IS in SAP-deficient T cells, and subsequent DAG-dependent induction of IL-2 and CD25, illuminates a biochemical link between the SAP/DGKα axis, IS restoration, and downstream signaling events required for RICD (27–30). Indeed, activation of RasGRP1 and PKCθ was required to rescue RICD in SAP-deficient T cells upon DGKα blockade (Fig. 5A–B, S2). Interestingly, DGKα inhibition cannot recapitulate all SAP-dependent signaling functions, such as TCR-induced expression of FASLG or BCL2L11, genes previously implicated in SAP-associated induction of RICD (5). This observation suggests that rescue of DAG-mediated signaling activates other pro-apoptotic pathways that partially compensate to boost RICD sensitivity. Here we show that the induction of NUR77 and NOR1 is defective in TCR-restimulated SAP-deficient T cells, and that the expression of these genes is restored by inhibition of DGKα. NUR77 and NOR1 are orphan nuclear receptors known to trigger thymocyte apoptosis during negative selection, and mediate RICD (32, 41). The pro-apoptotic activity of NUR77 and NOR1 depends on their phosphorylation by RSK, an ERK-1/2 dependent kinase, and subsequent translocation to the mitochondria to promote mitochondrial depolarization and apoptosis (32, 33). We observed that ERK and RSK activity, as well as NUR77 and NOR1, were required for RICD rescue triggered by DGKα inhibition in XLP-1 T cells. These observations provide a mechanistic connection between the rescue of DAG signaling and execution of RICD.
EBV-induced FIM is proposed to result from defective RICD of CD8+ T cells and impaired cytotoxic elimination of EBV-infected B cells by CD8+ T cells and NK cells. These events contribute to the excessive accumulation of activated effector CD8+ T cells and life-threating damage to the liver, bone marrow, and other organs (2, 5). Using a murine model of FIM (36, 37), we showed that DGKα inhibition had no significant effect on reducing the activation status or function (e.g. cytokine secretion or degranulation) of effector CD8+ T cells in either WT or Sh2d1a−/− mice. These data suggest that treatment with R59022 after LCMV infection does not impair initial lymphocyte activation. However, this treatment did significantly decrease the absolute number of activated CD8+ T cells in Sh2d1a−/− mice, leading to fewer and smaller lymphocytic infiltrates within the liver and marked reductions in the level of IFNγ in the serum. These results suggest that RICD resistance is connected to aberrant DGKα activity and serves as a key driver of virus-induced immunopathology in Sh2d1a−/− mice. Remarkably, the apoptosis resistance of activated T cells in LCMV-infected Sh2d1a−/− mice can be overcome via DGKα inhibition, even when such inhibition is initiated well after infection is established. These data are relevant to the clinical setting, where patients often present with FIM days to weeks after primary EBV infection.
In conclusion, our findings underscore the importance of SAP-mediated DGKα inhibition in maintaining lymphocyte homeostasis by ensuring sufficient TCR-induced DAG signaling strength for apoptosis. These data provide proof of principle that treatment with a DGKα inhibitor could serve as a novel, reasonable strategy to counteract pathological EBV-driven lymphohistiocytosis that occurs in EBV-infected XLP-1 patients by restoring the RICD sensitivity of activated CD8+ T cells.
Materials and Methods
Study design
This was a preclinical study to 1) determine if DGKα inhibition could rescue RICD in SAP-deficient T cells, and 2) assess the efficacy of a DGKα inhibitor in attenuating CD8+ T cell lymphocytosis and immunopathology in LCMV-infected SAP-deficient mice, a model of FIM. Although in vitro experiments utilizing XLP-1 patient T cells were often constrained by limited sample availability, each RICD experiment was performed with at least 2 separate XLP patients and different control donors (e.g. Fig 1A–B). We also generated robust corroborating data using siRNA-mediated SAP knockdown in T cells from multiple human donors (n ≥ 3 experiments each). Once we established that DGKα blockade restored RICD sensitivity in SAP-deficient T cells, we focused on delineating the biochemical mechanism that explains this phenomenon. For all in vitro data, the number of experiments (including technical replicates) is defined in each figure legend. For in vivo experiments, numbers of mice are outlined in each figure legend. All statistical analyses described below were verified by consultation with an experienced biostatistician (Cara Olsen, USUHS).
Cell culture
Peripheral blood mononuclear cells (PBMCs) were isolated from normal controls or XLP-1 patients by Ficoll-Paque PLUS (GE Healthcare) density gradient centrifugation, washed, and resuspended at 2×106 cell/ml in complete media (cRPMI): RPMI-GlutaMAX (Life Technologies) containing 10% heat inactivated FCS (Lonza), 2 mM glutamine, and 100 U/ml of penicillin and streptomycin (Life Technologies). T cells were activated with 1 μg/ml anti-CD3 (clone UCHT1) and anti-CD28 (clone CD28.2) antibodies. After 3 days, activated T cells were washed and cultured in cRPMI plus 100 IU/ml rhIL-2 (Peprotech) at 1.2×106 cells/mL for ≥7 days before apoptosis assays were conducted (media changed every 2–3 days).
Jurkat A3 cells were from ATCC, and 293FT from Life Technologies. Cells were cultured in RPMI or DMEM (Life Technologies) with 10% FCS and antibiotics/antimycotics (Sigma-Aldrich).
DGK inhibitors R59949 and R59022 (Sigma-Aldrich) were dissolved in DMSO; all reagents and antibodies used are listed in Table S1.
siRNA transfections
PBMCs were transfected with 200 pmol of Stealth Select siRNA or Stealth RNAi Negative Control Duplexes (Life Technologies). siRNA sequences are listed in Table S2. Transient transfections were performed using Amaxa nucleofector kits for human T cells (Lonza) and the Amaxa Nucleofector II or 4D systems (programs T-20 or EI-115). Cells were cultured in IL-2 (100 IU/ml) for 4 days to allow target gene knockdown. Knockdown efficiency was periodically evaluated by RT-PCR and Western blotting.
Conjugation and live-cell imaging of Jurkat T-cells
Jurkat T cells and Raji B cells were labeled, imaged and analyzed as described in the Supplemental Methods.
Immunofluorescence experiments with primary T cells
Human T cells were stimulated with soluble anti-CD3 and anti-CD28 (1 μg/ml) for at least 7 days and transfected with Amaxa Nucleofector™ Kit for human T Cells (Lonza) with control, SAP-specific and/or DGKα-specific siRNA. After 72 hours T cells were incubated with Raji B cells loaded with mixed SEE and SEB superantigens (1 μg/ml) for 15 min, fixed and stained for either PKCθ or RasGRP1. For some experiments, transfected T cells were pre-treated with R59949 (10 μM, 30 min 37°C) or DMSO before conjugation.
Cytofluorimetry
To examine RICD, activated T cells (105 cells/well) were plated in triplicate in 96-well round-bottom plates and treated with anti-CD3ε mAb OKT3 (1–100 ng/ml) in cRPMI + 100 IU/ml rhIL-2 for 24 hours. R59949 (5–10 μM), R59022 (5–10 μM), DAG (50 μM), U0126 (5 μM), FR180204 (10 μM) or Rottlerin (6 μM) inhibitors were added 30 minutes before restimulation. At 24 hours post-restimulation, cells were stained with 1 μg/ml propidium iodide and collected for 30 seconds per sample on FACScan or Accuri C6 flow cytometers (BD). Cell death was analyzed with CellQuest/CFlow software (BD) or Flowing software (Turku Bioimaging) as percentage of cell loss = (1 − [number of viable cells (treated) / number of viable cells (untreated)]) × 100 (5).
For AnnexinV assays, ~1×106 cells were treated with OKT3 (10 ng/ml) as above. Cells were stained 6–12 hours later with AnnexinV-PE (Biolegend) and analyzed on an Accuri C6.
To evaluate CD25 expression, 1×106 cells were stimulated with OKT3 (100 ng/ml) for 24 hours, fixed and stained with anti-CD25 plus anti-mouse AlexaFlour488. Stained cells were collected on a FACSCalibur.
Western blotting
Lymphocytes (1–10×106 cells) were stimulated, lysed and subjected to SDS-PAGE and immunoblotting as described (5, 15). Immunoblot images were acquired and quantified using a Versadoc Model 4000 Imaging System (Bio-Rad) or ImageJ software (for film). Spot densitometry analyses are summarized in Table S4.
Quantitative RT-PCR
Activated lymphocytes (30×106 cell/ml) were stimulated in cRPMI with 10 μg/ml OKT3 for 4 hours. R59949 (5 μM) was added 30 minutes before restimulation. Cells were washed with cold PBS, and mRNA was extracted using a ChargeSwitch Total RNA Cell Kit (Life Technologies). RNA was reverse transcribed using High-Capacity cDNA Reverse Transcription Kits (Life Technologies), and cDNA targets quantified by RT-PCR (C1000 Thermal Cycler CFX96, Bio-Rad) using TaqMan gene expression assays (see Table S3), with GUSB as the housekeeping control (Life Technologies).
Mice and in vivo experiments
Sh2d1a−/− mice were as described (37). C57BL/6 (B6) mice were purchased from Jackson Laboratories. To establish LCMV infection, mice received 2×105 plaque-forming units (PFU) of LCMV-Armstrong by intraperitoneal (i.p) injection on day 0 and experiments were carried out until day +8 post-infection. Beginning at day 4, mice were given twice daily i.p injections of R59022 at a dose of 2 mg/kg body weight, dissolved in DMSO. Mice in all groups were sex and age matched. Stimulation of mouse splenocytes in vitro, assessment of liver histology, and quantification of viral titers were performed as described in the Supplemental Methods.
Statistical analysis
Evaluation of in vitro assays across multiple treatments (RICD, RT-PCR, ELISA), and in vivo experiments, were analyzed using two-way ANOVA (alpha: 0.05) with Sidak’s multiple comparisons correction using GraphPad PRISM software. When comparing two groups (RT-PCR, AnnV+ cells), a two-tailed paired Student’s t-test was performed in Microsoft Excel. Error bars are described in figure legends as ± SEM or ± SD where appropriate. A single asterisk denotes significance of a p-value ≤0.05 in all experiments; p-values are included in Table S5.
Study approval
Blood samples were obtained with informed consent under protocols approved by the respective Institutional Review Boards (Cincinnati Children’s Hospital Medical Center, National Institute of Allergy and Infectious Diseases, University of Piemonte Orientale). Experimental procedures on animals were approved by the Institutional Animal Care and Use Committee at The Children’s Hospital of Philadelphia and St. Jude Children’s Research Hospital.
Supplementary Material
Acknowledgments
We thank the patients and their families for participating in our study. We also thank biostatistician Cara Olsen (USUHS) for consultation on statistical analysis, John Wherry for providing LCMV and assistance with performing LCMV infections, Doreen Cantrell for supplying the PKCθ-CRD construct, Roland Wedlich-Soldner for supplying the Lifeact-GFP construct and Julian Downward for supplying GFP-tubulin.
Funding: KN was supported by the XLP Research Trust and the Sean Fischel Fund for HLH Research. ALS and SEL were supported by grants from the NIH (1R01GM105821), XLP Research Trust, and USUHS. AG, ER, and VM were supported by grants from Telethon (GGP10034 and GGP13254) and AIRC (IG13524 and IG5392). GB is supported by University Piemonte Orientale (Young Investigators). VM was supported by a grant from the Compagnia di San Paolo. RD was supported by a NIH K22 grant (1 K22 CA188149-01).
Footnotes
Author contributions: ER, VM, SEL, ALS, and GB designed and carried out in vitro experiments; RD, KV, PT and KEN in vivo experiments; SEL and ALS experiments on XLP-1 patient lymphocytes; VM, IR and CB imaging in Jurkat cells; LP and CTB imaging on primary lymphocytes, CW imaging on mouse lymphocytes, SMK and PLS cytotoxicity assays; GB, AG, KEN and ALS designed the project, supervised research and wrote the paper.
Competing interests: The authors declare no conflict of interest.
References and Notes
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