Table 1. Differentially expressed LncRNAs resulting from SAM analyses comparing N with MGUS, sMM, MM, or PCL patients.

lncRNA	N	MGUS	SMM	MM	PCL	Chr	ALIAS; OVERLAPPING TRANSCRIPTa	Corr. lncRNA- transcriptb	PsGc	Putative Parental Gene	Corr. lncRNA- parental geneb
AC100793.1-1	↑	↓	↓	↓	↓	17q21	RAMP2-AS1
ATL3-1	↑	↓	↓	↓	↓	11q13	C11orf95
ADAP2-2	↑	↓	↓	↓	↓	17q11	RN7SL138P		M	RN7SL (14q21)	NA
STOM-7	↑		↓	↓	↓	9q33	GGTA1P		UP
HSFY2-10	↑		↓	↓	↓	Yq11	CD24P4; S to CD24	NA	PP	CD24 (Yq11)	NA
CISH-3	↑	↓		↓	↓	3p21	ZNF652P1; AS to DOCK3	R=0.053	PP	ZNF652 (17q21)	R=0.65 p<2.2e-16
LRRC47-1	↑	↓		↓	↓	1p36	TP73-AS1; AS to TP73	R=0.03
SEL1L3-6	↑	↓	↓		↓	4p15			UnP	NA
SEMA4B-4	↑	↓	↓		↓	15q26
PQLC2-5	↑	↓	↓		↓	1p36	RN7SL277P; AS to CAPZB	R= − 0.26	M	RN7SL (14q21)	NA
SNURF-1	↑	↓	↓		↓	15q11	S to SNORD115-116 family	NA
SNURF-3	↑	↓	↓		↓	15q11	S to SNORD115-116 family	NA
APC-6	↓	↑	↑	↑	↑	5q22	EPB41L4A-AS1; S to SNORA13	NA
MON2-2	↓	↑	↑	↑	↑	12q14	S to Let7i	NA
ARFIP1-5	↓	↑	↑	↑	↑	4q13	AS to FBXW7, S to MIR4453	R=0.03 (FBXW7)
PTPDC1-7	↓		↑	↑	↑	9q22	AS to MIRLET7DHG	NA
MC2R-2	↓		↑	↑	↑	18p11			PP	RPL36A (Xq22)	NA
SAFB2-3	↓		↑	↑	↑	19p13	SNRPEP4		PP	SNRPE (1q32)	R=0.5 p =0.030
SYT8-3	↓		↑	↑	↑	11p15	RPL36AP39		PP	RPL36A (Xq22)	NA
CHRDL2-3	↓		↑	↑	↑	11q13			PP	RPS12 (6q23)	R=0.17
SCYL1-1	↓		↑	↑	↑	11q13	MALAT1
TRPV2-1	↓		↑	↑	↑	17p11	LRRC75A-AS1; S to SNORD49B, 49A, 65	NA
LIPG-3	↓		↑	↑	↑	18q21	SNHG22
USP25-2	↓		↑	↑	↑	21q21	S to SNORD74, MIR99AHG	NA
C3orf25-2	↓		↑	↑	↑	3q21	RPL32P3; S to SNORA7B	NA	UnP	RPL32 (3p25)	R=0.47 p<2.2e-16
AP1M2-1	↓		↑	↑	↑	19p13	ILF3-AS1
ANGPTL1-3	↓		↑	↑	↑	1q25	AS to RALGPS2	R=0.3 p=3.8e-08
SENP5-4	↓		↑	↑	↑	3q29	NCBP2 -AS2
PAIP1-3	↓		↑	↑	↑	5p12	RPL29P12; AS to NNT	R= − 0.054	PP	RPL29 (3p21)	R=0.7 p<2.2e-16
ABCB5-3	↓		↑	↑	↑	7p21	RPL23P8		PP	RPL23 (17q12)	NA
RLIM-6	↓		↑	↑	↑	Xq13	AS to SLC16A2	R=0.37 p=3.7e-10

Arrows indicate lncRNA expression, upregulation (↑) or downregulation (↓), in the corresponding group. Chromosomal localization (Chr), alias name, and overlapping transcripts are indicated.

^aSense (S) to, or Antisense (AS) to overlapping transcripts;

^bPearson correlation coefficient; NA =not available (not detected by the array);

^cPsG=Pseudogene; Ensembl type: PP= Processed Pseudogene; UP= Unitary Pseudogene;UnP= Unprocessed Pseudogene; M= miscellaneous RNA.