Abstract
Vertebrate life critically depends on renal filtration and excretion of low molecular weight waste products. This process is controlled by a specialized cell-cell contact between podocyte foot processes: the slit diaphragm (SD). Using a comprehensive set of targeted KO mice of key SD molecules, we provided genetic, functional, and high-resolution ultrastructural data highlighting a concept of a flexible, dynamic, and multilayered architecture of the SD. Our data indicate that the mammalian SD is composed of NEPHRIN and NEPH1 molecules, while NEPH2 and NEPH3 do not participate in podocyte intercellular junction formation. Unexpectedly, homo- and heteromeric NEPHRIN/NEPH1 complexes are rarely observed. Instead, single NEPH1 molecules appear to form the lower part of the junction close to the glomerular basement membrane with a width of 23 nm, while single NEPHRIN molecules form an adjacent junction more apically with a width of 45 nm. In both cases, the molecules are quasiperiodically spaced 7 nm apart. These structural findings, in combination with the flexibility inherent to the repetitive Ig folds of NEPHRIN and NEPH1, indicate that the SD likely represents a highly dynamic cell-cell contact that forms an adjustable, nonclogging barrier within the renal filtration apparatus.
Genetic and high-resolution ultrastructural data suggest that the podocyte slit diaphragm is a highly dynamic cell-cell contact that forms an adjustable, nonclogging barrier within the renal filtration apparatus.
Introduction
The identification of mutations in the type 1 transmembrane molecule NEPHRIN in hereditary nephrotic syndrome revealed its central role in kidney filtration barrier function (1). Subsequently, the NEPHRIN-related protein family of NEPH1–3 proteins was identified (2), and all 4 molecules have been implicated in the assembly of the slit diaphragm (SD). Their cytoplasmic tails appear to initiate crucial signalling programs that maintain the integrity of the SD (1, 3–5), establishing the SD as a dynamic signalling hub that transfers and integrates diverse internal and external cues (6, 7). In addition to NEPHRIN and NEPH family proteins, molecular constituents of tight, adhesion, gap, and neuronal junctions localize to the SD, establishing the SD as a unique cell-cell contact (7). Although our knowledge of the molecular composition of the SD complex has expanded over the past decade, the structure and structure-based functional concepts of the glomerular filtration barrier have remained incomplete. On the basis of conventional electron microscopy (EM) studies of perfusion-fixed rat kidneys, Rodewald and Karnovsky proposed a zipper-like SD structure (8). More recently, an electron tomography study of fixed tissue suggested that the SD contains 35-nm strands that wind together to form a network, creating pores smaller than albumin molecules (9). However, owing to the low accessibility of the SD in vivo and the absence of high-resolution studies on nonfixed tissue, the precise molecular structure and function of the SD remained unresolved. Moreover, several known properties of the glomerular filtration barrier are difficult to explain based on the current structural model, begging the following questions: how can an anticipated rigid mesh of NEPHRIN/ NEPH cis- and trans-heterodimers adapt to dynamic changes of podocyte foot processes; which roles are taken by the different members of the NEPH family proteins; and why does this static filter at the outermost section of the glomerular filtration barrier not clog? These unanswered questions led us to reappraise the molecular composition and ultrastructure of the slit diaphragm.
Results
Lack of NEPHRIN or NEPH1, but not NEPH2 or NEPH3, causes early lethality and severe nephrotic kidney disease.
Since the reported expression profiles of all 4 NEPHRIN/NEPH protein family members varied considerably throughout the literature, we first performed ISH to determine their individual expression profiles (3, 4, 10). Tissue from newly generated constitutive KO mice for Nphs1, Neph1, Neph2, and Neph3 was used as a negative control. Nphs1 (NEPHRIN) showed a restricted expression pattern in podocytes, pancreas, and the cerebellum anlage (Figure 1, A and B and Supplemental Figure 1, A–D; supplemental material available online with this article; doi:10.1172/jci.insight.86177DS1). In contrast, ISH and Western blotting revealed that Neph1 was broadly expressed in kidney, lung, brain, heart, skeletal muscle, liver, pancreas, and gut (Figure 1, C and D and Supplemental Figure 1, E–I). Neph2 was expressed predominantly in the central nervous system and peripheral neuronal tissue, whereas Neph3 was expressed mainly in the hind- and forebrain, as well as the pancreas (Supplemental Figure 2, A and B) (11). Surprisingly, despite their proposed function within the SD, neither Neph2 nor Neph3 were detected in embryonic kidney by ISH (Supplemental Figure 2, A and B) (4, 5, 12). Adult expression in 8-week-old animals was assessed using isolated podocytes of mT/mG*hNPHS2Cre mice. While Nphs1 and Neph1 mRNA could be readily detected, no Neph2 mRNA and only a weak band corresponding to Neph3 mRNA could be demonstrated (Supplemental Figure 2E). In contrast to adult brain tissue, no NEPH2 and NEPH3 protein could be detected in glomerular lysates (Supplemental Figure 2F).
To further examine the functional role of NEPHRIN, NEPH1, NEPH2, and NEPH3, we generated constitutive KO mice for each gene (Figure 1, E–H; Supplemental Figure 1, J–M; and Supplemental Figure 2, C and D). These mice displayed differing survival characteristics; Nphs1–/– and Neph1–/– mice were born with nephrotic-range proteinuria and died perinatally, whereas Neph2–/– and Neph3–/– mice appeared normal for at least the first 6 months (Figure 1, E–H).
NEPHRIN and NEPH1 can form rudimentary SDs independently of each other.
By light microscopy, both Nphs1–/– and Neph1–/– had glomerula of normal appearance but presented signs of increased tubular protein reuptake (Figure 2, A, E, and I). Compared with control animals, scanning EM (SEM) revealed broadened primary processes, as well as shortened foot processes in Nphs1–/– and Neph1–/– mice (Figure 2. B, F, and J). Transmission EM (TEM) documented tight junction–based intercellular contacts in most areas of podocytes covering the glomerular basement membrane (GBM) (Figure 2, C, G, and K). NEPH1 immunoreactivity in Nphs1–/– kidneys was largely maintained, as was NEPHRIN expression in Neph1–/– (Figure 2, D, H, and L). Unexpectedly, in 17% of the GBM, we detected shorter 22 nm intercellular junctions in Nphs1–/– mice (Figure 2, M and N and Supplemental Figure 3, A and C), which previously have not been described (13).
Importantly and in contrast to the current literature, this kind of intercellular junction was also seen in TEM images of human patients with congenital nephrotic syndrome (CNS) due to NPHS1 Fin major/Fin major mutations (Figure 2S, Supplemental Figure 3C, and Supplemental Figure 4, A–E) (14–17). Immunogold labeling identified these structures as NEPH1-containing cell-cell contacts in both mice and humans (Figure 2, O and T, and Supplemental Figure 4F). Conversely, Neph1–/– mice displayed 34 nm intercellular junctions in 30% of the GBM at early stages of glomerular maturation (Figure 2, P and Q and Supplemental Figure 3, B and C). During maturation, these remnant SDs moved apically and were finally replaced by apparent tight junctions (Figure 2K and Supplemental Figure 3, D–F). Immunogold labeling of these early SD-like junctions identified NEPHRIN as a constituent (Figure 2R). Loss of either Nphs1 or Neph1 led to pronounced proteinuria at birth, whereas Neph2 and Neph3 KO mice had normal-appearing SDs and did not show any signs of proteinuria (Supplemental Figure 5, A–H). Together, these data suggest that the mammalian SD consists of 2 main functional components, a NEPH1- and a NEPHRIN-based cell-cell contact, both of which are required for normal SD development and maintenance in mammals.
The SD is a flexible multilayered, bipartite protein scaffold.
To analyze the precise arrangement of NEPHRIN and NEPH1 within the mammalian SD, we used cryo-electron tomography (CET) of vitreous sections (Figure 3, A and B) (18). The tomograms revealed quasiperiodic molecular strands, spanning adjacent podocyte foot processes. These strands typically formed 2–3 individual layers toward the apical cell surface (Figure 3A). Although the length of these molecular strands varied markedly between the basal and apical layers, they exhibited a similar thickness and approximately the same distance to the neighboring molecule, indicating that homophilic interactions in a trans-configuration were virtually absent (Figure 3, A and B). The length of 283 individual molecular strands extracted from individual subtomograms varied between 15 and 55 nm. Subsequent subtomogram averaging and classification of the strands according to their length revealed a quasiperiodic spacing of 7 nm, which becomes more disordered with increasing length. The strand length, as quantified after classification, shows a bimodal distribution with 2 peaks at 25 nm and 40 nm, respectively.
Homology modeling of NEPHRIN and NEPH1 with TITIN and other Ig-fold containing proteins (sequence identities between 39%–78%, Supplemental Table 1) suggested that the extracellular domain of NEPHRIN contains 9 Ig folds and measures 43.8 nm in length, while the extracellular domain of NEPH1 contains 5 Ig folds, resulting in a length of 19.7 nm (Figure 4, B and C and Supplemental Table 1) (19, 20). These values are consistent with the measured strand lengths of the SD in vitreous sections (Figure 3, A and B). Due to large variations of individual strand lengths, subtomogram averaging did not yield a high-resolution structure. Thus, we used high-pressure freezing, freeze substitution, and plastic electron tomography (PET) of the same specimen to record larger fields of view and to obtain reliable statistics by measuring the length of several thousand individual molecular strands. PET confirmed the tight quasiperiodic arrangement of NEPH1 molecules in a junctional compartment facing the GBM (Figure 3, C–H), while NEPHRIN strands in the junctional compartment distant to the GBM were loosely stacked and less periodically arranged (Figure 3, E–H). Analyzing the length of strands connecting the interdigitating podocyte foot processes revealed a bimodal peak at 23 nm and 45 nm (with a variance of 10 nm), corresponding well to the CET data analysis (Figure 4A). The PET 3D reconstruction showed a multilayered, bipartite assembly of the SD with several horizontal layers of basal NEPH1 strands and apical NEPHRIN strands crossing the interpodocyte space (Figure 3, E–H). The 3D reconstruction suggests an approximately 1:2.5 ratio of NEPHRIN and NEPH1 molecules within the SD. Interestingly, we could obtain this molecular ratio reanalyzing available mouse and human proteomic data sets, which — in the case of microdissected human glomerula — yielded a ratio of 1:2.34 for the amount of NEPHRIN to NEPH1 protein (SEM ± 0.53, n = 7) (21, 22).
Evolutionary concept of a NEPH1-based SD in birds.
Given the complexity of the multilayered, bipartite (NEPHRIN/NEPH1) mammalian SD, we investigated the evolutionary conservation of the genes encoding for NEPHRIN and NEPH1 (www.treefam.org, TF327139). Whereas NEPH1 is remarkable conserved through all 99 species examined, NPHS1 encoding for NEPHRIN is surprisingly absent in birds (Figure 5A). Strikingly, however, we found that birds (chicken; Gallus gallus), despite the absence of NEPHRIN, still exhibited a fully differentiated foot process network with SDs (Figure 5, B and C, E–G). Thus, this animal model offered the unique opportunity to explore the junctional architecture of a non-NEPHRIN based SD. Supporting our hypothesis that the shorter SDs in mammals are formed by NEPH1, the SD in G. gallus had a width of 18 nm, similar to the 22 nm–wide SD in Nphs1–/– mice or the 23 nm–wide SD in humans with CNS due to NPHS1 mutations (Figure 5D). As predicted by the genome analysis, we detected NEPH1, but not NEPHRIN, by immunofluorescence and immuno–electron microscopy in chicken kidneys (Figure 5I and Supplemental Figure 6, A–F). Other known SD-associated proteins (e.g., PODOCIN, ZO-1, CD2AP, and TRPC6) were detected in G. gallus, indicating an otherwise similar molecular composition of this structure (Figure 5, H, and J–L and Supplemental Figure 6, G–L, refs. 23–27). High-resolution SEM analysis of the SD in G. gallus revealed a tight mesh of junctions spanning the interpodocyte space similar to the NEPH1 molecule configuration in the mammalian SD (Figure 5, O and P). This is in contrast to mice, in which multiple molecular strands that we attribute to NEPHRIN bridge the interpodocyte space (Figure 5, M and N). Importantly, birds have a more than 20× higher urinary protein concentration (2.0 mg/ml vs. <0.1 mg/ml) than mammals — a difference that appears to be needed to keep uric acid in a micellar solution. Thus, our data might suggest that the efficient excretion of nitrogen via uric acid in a high-protein containing solution is associated with the evolutionary loss of NEPHRIN in birds.
Discussion
In recent years, the SD has emerged as a key substructure in glomerular disease and proteinuria. With the cloning of Nphs1 as the gene responsible for CNS of the Finnish type has allowed analysis of this condition at the molecular level (1). Further understanding of the role of NPHS1 in the development of CNS has also been fostered by the use of KO animals targeting newly identified constituents of the SD. While, for all 3 previous Nphs1 KO models (13, 28, 29), perinatal lethality and extreme albuminuria similar to our mouse model were reported, description of a substantial percentage of open slits (20%) showing some residual parts of a shortened slit diaphragm (22 nm) is a new observation that is in contrast to the so far noted complete loss of the SD. Given that this finding could be robustly shown in both mouse and human tissue, differences in either mouse genetic background or tissue preparation might be a possible explanation for the observed differences.
While others have shown RNA and protein expression of all 3 NEPH family members in glomerula, we — in contrast — can demonstrate that, beside Neph1, only Neph3 is expressed at the level of RNA in podocytes, while on a glomerular protein level, neither NEPH2 nor NEPH3 are detectable. This is underlined by the absence of a proteinuric phenotype in constitutive Neph2 and Neph3 KO animals (4, 30). It should be stated that both antibodies used were controlled using brain lysates of the respective constitutive KO animals. This evidence on the protein level, plus the lack of a functional glomerular phenotype in both Neph2 and Neph3 KO animals, in our opinion conclusively indicates that NEPH1 is the only relevant player of the NEPH family of proteins at the SD.
Although the composition and function of the SD in part has been described before, the native molecular architecture and function of its constituents have remained elusive. Electron tomography revealed 2 populations of strands: one with an average length of 23 (variance 10 nm) and another with an average length of 45 nm (variance 10 nm). The extreme variability seen in individual strand lengths is in striking contrast to the minimal flexibility usually observed in cadherin-based junctions, such as desmosomes or adherens junctions (18). The measurements of the inter–foot process distances in capillaries without blood flow correspond well to the extracellular lengths of both NEPH1 and NEPHRIN at a low energy state. Bioinformatic analysis revealed a high homology of NEPH-1 and NEPHRIN to TITIN, OBSCURIN-like proteins, VCAM-1, DSCAM, and other immunoglobulin superfamily molecules; several of these molecules have been shown to function as molecular springs (31), a mechanism utilized within biological systems to provide a high degree of flexibility. Among these, TITIN is probably the best-studied protein and functions as a return spring to reposition the muscular thick filaments (32). Atomic force microscopy and mechanotransduction experiments have shown that the TITIN Ig-fold repeats can be dramatically stretched. A possible molecular spring mechanism of NEPH1 and NEPHRIN could be supported by the extreme variability seen in individual strand lengths. Conceptually, a spring-like, bipartite arrangement of NEPH1 and NEPHRIN could account for the dynamic adjustments of the SD required to respond to different blood pressures and variable glomerular capillary wall extensions and could offer an evolving concept of the biophysical properties and function of the SD. Firstly, the peculiar hourglass shape of adjacent podocyte foot processes can be explained by the layered, bipartite arrangement of NEPH1 and NEPHRIN. The shorter NEPH1 molecules bridge the narrower basal parts of the intercellular slit, providing a broad contact area with the GBM and concentrating the adhesive properties of the foot processes on the side opposing the GBM. The longer NEPHRIN molecules are placed more apically and follow the shape of the foot process. Secondly, the molecular spring properties of NEPH1 and NEPHRIN may have extensive implications for the filtration properties of podocytes. Our tomographic reconstructions revealed that transinteractions near the SD midline are very rare (<5%), and thus, the previously postulated dense midline was virtually absent. Historically, this dense midline structure was based on conventional EM techniques and laid the foundation of the molecular zipper SD concept and of a static sieve model, blocking molecules larger than the size of albumin (8, 9). Based on our observations, the structure of NEPH1 and NEPHRIN suggest the possibility of a more dynamic arrangement (20). In the relaxed state, their layered assembly could allow the diffusion of small molecules approximately 2–3 nm in diameter. Changing the slit width (by e.g. blood pressure variation, glomerular contractions, body movements) could lead to elongation or shortening of the molecular springs formed by NEPH1 and NEPHRIN. During these repetitive cycles of strain and relaxation, NEPH1 and NEPHRIN would actively change their spacing, while adaptive changes in NEPH1/NEPHRIN-mediated signaling and rearrangement of the cortical actin web could control the slit width. This would allow molecules like albumin to move through the SD at presumably low rates, which ultimately could ensure that the filter does not clog.
Recently, two other groups reported results using block-face SEM (FIB-SEM) where they could resolve the arrangement of neighboring podocyte foot processes and prove that individual podocytes indeed only interdigitate with adjacent podocytes but not with their own processes (33, 34). However, this technique does not have the resolution to study the SD in detail. One of these groups, therefore, also used electron tomography, albeit with glutaraldehyde fixed samples (34). This might be the reason this group only found one continuous layer of cell-cell contacts. Whether the also-reported punctated filamentous cell-cell contacts on both sides of this SD monolayer represent remnants of the native structure, as we describe it in this manuscript, remains to be shown.
Our study also reveals that NEPHRIN is not required to build a functional filtration barrier in birds. While other IgG molecules such as adherens junction proteins have been shown in avian podocytes using antibody-based staining techniques, their relevance for maintaining the avian SD need to be determined (35). Interestingly, the bipartite NEPHRIN/NEPH1 organization seems to provide the filtering characteristics with the least loss of albumin. In birds, an SD containing only Neph1 has possibly evolved to keep urate in micellar solution, albeit at the expense of a higher proteinuria. The concept of a spring-like, multilayered interpodocyte slit stresses the necessity for a strong yet flexible cell-cell contact that forms an adjustable barrier to proteins, thereby ensuring that the renal filter does not clog at its outermost part.
Methods
Animals.
Mice were housed in an specific pathogen free (SPF) facility with free access to chow and water and a 12-hour day/night cycle. Breeding and genotyping were done according to standard procedures. Urinary albumin and creatinine were measured using a fluorimetric albumin test kit (Progen, PR2005) or enzymatic colorimetric creatinine kit (LT-SYS, Lehmann) following the manufacturers’ instructions.
For complete information on techniques used, please refer to the Supplemental Methods.
Statistics.
Data are expressed as mean ± SEM. Statistical comparisons were performed using the GraphPad Prism Software Package 6.02 (GraphPad Software) with 2-tailed Student’s t test, Wilcoxon test, or ANOVA, including respective corrections where indicated. Differences with P values less than 0.05 were considered significant.
Study approval.
All animal experiments were conducted according to the NIH Guide for the Care and Use of Laboratory Animals, as well as in accordance with the German law for the welfare of animals, and were approved by local authorities (Regierungspräsidium Freiburg G-09/23, G-10/100, X12/06J, and X13/04J).
Author contributions
FG, ASF, JM, and TBH conceived and analyzed experiments. FG, ASF, and TBH supervised the study. FG, CW, CS, OK, JP, SS, MK, SA, AH, RB, MMR, LV, AB, DR, MB, DK, and ASF performed experiments. GW, TB, and AF provided critical reagents. FG, CS, GW, ASF, and TBH wrote the manuscript with input and discussion from all authors.
Supplementary Material
Acknowledgments
We would like to thank Charlotte Meyer, Temel Kilic, Helga Schachner, and Elisabeth Wiesner for expert technical assistance. We thank Hannu Jalanko for granting us access to human EM material and Yutaka Yoshida for access to his original proteomic data sets of human glomeruli. In addition, we would like to express our gratitude to all members of our laboratories for helpful discussions and support. We thank Ketan Patel for critical reading of the manuscript. This study was supported by the German Research Foundation (DFG), CRC 1140 (to F. Grahammer, G. Walz, and T.B. Huber), CRC 992 (to T.B. Huber), Heisenberg program (to T.B. Huber), and FR 1653/3-1/HU 1016/5-1; the European Research Council (ERC grant to A.S. Frangakis and T.B. Huber); the BMBF-Joint transnational Grant 01KU1215 (T.B. Huber) and STOP-FSGS 01GM1518C (to T.B. Huber); the Else-Kröner Fresenius Stiftung-NAKSYS; Excellence Initiative of the German Federal and State Governments (GSC-4, Spemann Graduate School to C. Schell and T.B. Huber, BIOSS to T.B. Huber); the Diabetes Research Institute Foundation (A. Fornoni); and the NIH (R01-DK090316 and R01-DK104753 to A. Fornoni).
Footnotes
Conflict of interest: The authors declare that no conflict of interest exists.
Reference information:JCI Insight. 2016;1(9):e86177. doi:10.1172/jci.insight.86177.
Contributor Information
Florian Grahammer, Email: florian.grahammer@uniklinik-freiburg.de.
Christoph Wigge, Email: wigge.christoph@gmail.com.
Christoph Schell, Email: christoph.schell@uniklinik-freiburg.de.
Oliver Kretz, Email: oliver.kretz@bioss.uni-freiburg.de.
Jaakko Patrakka, Email: Jaakko.Patrakka@ki.se.
Simon Schneider, Email: simsimilia@web.de.
Martin Klose, Email: martin.klose@mol-med.uni-freiburg.de.
Anja Habermann, Email: Habermann@biophysik.org.
Ricarda Bräuniger, Email: office.frangakis@biophysik.org.
Andreas Bregenzer, Email: alaskan67@hotmail.com.
Dennis Rubbenstroth, Email: Dennis.Rubbenstroth@uniklinik-freiburg.de.
Melanie Boerries, Email: m.boerries@dkfz-heidelberg.de.
Dontscho Kerjaschki, Email: dontscho.kerjaschki@meduniwien.ac.at.
Gerd Walz, Email: gerd.walz@uniklinik-freiburg.de.
Thomas Benzing, Email: thomas.benzing@uk-koeln.de.
Alessia Fornoni, Email: afornoni@med.miami.edu.
References
- 1.Kestila M, et al. Positionally cloned gene for a novel glomerular protein--nephrin--is mutated in congenital nephrotic syndrome. Molecular Cell. 1998;1(4):575–582. doi: 10.1016/S1097-2765(00)80057-X. [DOI] [PubMed] [Google Scholar]
- 2.Sellin L, Huber TB, Gerke P, Quack I, Pavenstädt H, Walz G. NEPH1 defines a novel family of podocin interacting proteins. FASEB J. 2003;17(1):115–117. doi: 10.1096/fj.02-0242fje. [DOI] [PubMed] [Google Scholar]
- 3.Donoviel DB, et al. Proteinuria and perinatal lethality in mice lacking NEPH1, a novel protein with homology to NEPHRIN. Mol Cell Biol. 2001;21(14):4829–4836. doi: 10.1128/MCB.21.14.4829-4836.2001. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Gerke P, et al. NEPH2 is located at the glomerular slit diaphragm, interacts with nephrin and is cleaved from podocytes by metalloproteinases. J Am Soc Nephrol. 2005;16(6):1693–1702. doi: 10.1681/ASN.2004060439. [DOI] [PubMed] [Google Scholar]
- 5.Ihalmo P, Palmén T, Ahola H, Valtonen E, Holthöfer H. Filtrin is a novel member of nephrin-like proteins. Biochem Biophys Res Commun. 2003;300(2):364–370. doi: 10.1016/S0006-291X(02)02854-1. [DOI] [PubMed] [Google Scholar]
- 6.Huber TB, Benzing T. The slit diaphragm: a signaling platform to regulate podocyte function. Curr Opin Nephrol Hypertens. 2005;14(3):211–216. doi: 10.1097/01.mnh.0000165885.85803.a8. [DOI] [PubMed] [Google Scholar]
- 7.Grahammer F, Schell C, Huber TB. The podocyte slit diaphragm--from a thin grey line to a complex signalling hub. Nature Reviews Nephrology. 2013;9(10):587–598. doi: 10.1038/nrneph.2013.169. [DOI] [PubMed] [Google Scholar]
- 8.Rodewald R, Karnovsky MJ. Porous substructure of the glomerular slit diaphragm in the rat and mouse. J Cell Biol. 1974;60(2):423–433. doi: 10.1083/jcb.60.2.423. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Wartiovaara J, et al. Nephrin strands contribute to a porous slit diaphragm scaffold as revealed by electron tomography. J Clin Invest. 2004;114(10):1475–1483. doi: 10.1172/JCI22562. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Putaala H, Sainio K, Sariola H, Tryggvason K. Primary structure of mouse and rat nephrin cDNA and structure and expression of the mouse gene. J Am Soc Nephrol. 2000;11(6):991–1001. doi: 10.1681/ASN.V116991. [DOI] [PubMed] [Google Scholar]
- 11.Völker LA, et al. Comparative analysis of Neph gene expression in mouse and chicken development. Histochem Cell Biol. 2012;137(3):355–366. doi: 10.1007/s00418-011-0903-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Sun C, et al. Kirrel2, a novel immunoglobulin superfamily gene expressed primarily in beta cells of the pancreatic islets. Genomics. 2003;82(2):130–142. doi: 10.1016/S0888-7543(03)00110-1. [DOI] [PubMed] [Google Scholar]
- 13.Putaala H, Soininen R, Kilpeläinen P, Wartiovaara J, Tryggvason K. The murine nephrin gene is specifically expressed in kidney, brain and pancreas: inactivation of the gene leads to massive proteinuria and neonatal death. Hum Mol Genet. 2001;10(1):1–8. doi: 10.1093/hmg/10.1.1. [DOI] [PubMed] [Google Scholar]
- 14.Patrakka J, et al. Congenital nephrotic syndrome (NPHS1): features resulting from different mutations in Finnish patients. Kidney Int. 2000;58(3):972–980. doi: 10.1046/j.1523-1755.2000.00254.x. [DOI] [PubMed] [Google Scholar]
- 15.Ruotsalainen V, et al. Role of nephrin in cell junction formation in human nephrogenesis. Am J Pathol. 2000;157(6):1905–1916. doi: 10.1016/S0002-9440(10)64829-8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Patrakka J, et al. Proteinuria and prenatal diagnosis of congenital nephrosis in fetal carriers of nephrin gene mutations. Lancet. 2002;359(9317):1575–1577. doi: 10.1016/S0140-6736(02)08504-5. [DOI] [PubMed] [Google Scholar]
- 17.Schneeberger EE, Levey RH, McCluskey RT, Karnovsky MJ. The isoporous substructure of the human glomerular slit diaphragm. Kidney Int. 1975;8(1):48–52. doi: 10.1038/ki.1975.75. [DOI] [PubMed] [Google Scholar]
- 18.Al-Amoudi A, Díez DC, Betts MJ, Frangakis AS. The molecular architecture of cadherins in native epidermal desmosomes. Nature. 2007;450(7171):832–837. doi: 10.1038/nature05994. [DOI] [PubMed] [Google Scholar]
- 19.Özkan E, et al. Extracellular architecture of the SYG-1/SYG-2 adhesion complex instructs synaptogenesis. Cell. 2014;156(3):482–494. doi: 10.1016/j.cell.2014.01.004. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Sauer F, Vahokoski J, Song YH, Wilmanns M. Molecular basis of the head-to-tail assembly of giant muscle proteins obscurin-like 1 and titin. EMBO Rep. 2010;11(7):534–540. doi: 10.1038/embor.2010.65. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Yoshida Y, et al. Proteomic approach to human kidney glomerulus prepared by laser microdissection from frozen biopsy specimens: exploration of proteome after removal of blood-derived proteins. Proteomics Clin Appl. 2012;6(7-8):412–417. doi: 10.1002/prca.201200016. [DOI] [PubMed] [Google Scholar]
- 22.Boerries M, et al. Molecular fingerprinting of the podocyte reveals novel gene and protein regulatory networks. Kidney Int. 2013;83(6):1052–1064. doi: 10.1038/ki.2012.487. [DOI] [PubMed] [Google Scholar]
- 23.Boute N, et al. NPHS2, encoding the glomerular protein podocin, is mutated in autosomal recessive steroid-resistant nephrotic syndrome. Nature Genetics. 2000;24(4):349–354. doi: 10.1038/74166. [DOI] [PubMed] [Google Scholar]
- 24.Shih NY, et al. Congenital nephrotic syndrome in mice lacking CD2-associated protein. Science. 1999;286(5438):312–315. doi: 10.1126/science.286.5438.312. [DOI] [PubMed] [Google Scholar]
- 25.Winn MP, et al. A mutation in the TRPC6 cation channel causes familial focal segmental glomerulosclerosis. Science. 2005;308(5729):1801–1804. doi: 10.1126/science.1106215. [DOI] [PubMed] [Google Scholar]
- 26.Reiser J, et al. TRPC6 is a glomerular slit diaphragm-associated channel required for normal renal function. Nat Genet. 2005;37(7):739–744. doi: 10.1038/ng1592. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Schnabel E, Anderson JM, Farquhar MG. The tight junction protein ZO-1 is concentrated along slit diaphragms of the glomerular epithelium. J Cell Biol. 1990;111(3):1255–1263. doi: 10.1083/jcb.111.3.1255. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Hamano Y, et al. Determinants of vascular permeability in the kidney glomerulus. J Biol Chem. 2002;277(34):31154–31162. doi: 10.1074/jbc.M204806200. [DOI] [PubMed] [Google Scholar]
- 29.Rantanen M, et al. Nephrin TRAP mice lack slit diaphragms and show fibrotic glomeruli and cystic tubular lesions. J Am Soc Nephrol. 2002;13(6):1586–1594. doi: 10.1097/01.ASN.0000016142.29721.22. [DOI] [PubMed] [Google Scholar]
- 30.Rinta-Valkama J, Palmén T, Lassila M, Holthöfer H. Podocyte-associated proteins FAT, alpha-actinin-4 and filtrin are expressed in Langerhans islets of the pancreas. Mol Cell Biochem. 2007;294(1-2):117–125. doi: 10.1007/s11010-006-9251-2. [DOI] [PubMed] [Google Scholar]
- 31.Puchner EM, et al. Mechanoenzymatics of titin kinase. Proc Natl Acad Sci USA. 2008;105(36):13385–13390. doi: 10.1073/pnas.0805034105. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Bertz M, Wilmanns M, Rief M. The titin-telethonin complex is a directed, superstable molecular bond in the muscle Z-disk. PNAS. 2009;106(32):13307–133310. doi: 10.1073/pnas.0902312106. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Ichimura K, et al. Three-dimensional architecture of podocytes revealed by block-face scanning electron microscopy. Sci Rep. 2015;5:8993. doi: 10.1038/srep08993. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Burghardt T, et al. Advanced electron microscopic techniques provide a deeper insight into the peculiar features of podocytes. Am J Physiol Renal Physiol. 2015;309(12):F1082–F1089. doi: 10.1152/ajprenal.00338.2015. [DOI] [PubMed] [Google Scholar]
- 35.Yaoita E, et al. Avian podocytes, which lack nephrin, use adherens junction proteins at intercellular junctions. J Histochem Cytochem. 2016;64(1):67–76. doi: 10.1369/0022155415611708. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Kelley LA, Sternberg MJ. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc. 2009;4(3):363–371. doi: 10.1038/nprot.2009.2. [DOI] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.