Table 5.
Sample | Reported by Metrichor | Sequence type | Level | Accuracy |
---|---|---|---|---|
species/strain | ||||
K. pneumoniae (ATCC BAA-2146, ST11) | K. pneumoniae | - | Species | |
K. quasipneumoniae (ATCC 700603, ST489) ∗ | K. pneumoniae subsp. pneumoniae | - | Sub-species | |
K. pneumoniae 342 | ST146 | Strain | ✓/× | |
K. pneumoniae JM45 | ST11 | Strain | ✓/× | |
K. pneumoniae CG43 | ST86 | Strain | ✓/× | |
K. oxytoca | - | Species | ×/ | |
K. variicola At-22 | - | Strain | ✓/× | |
K. pneumoniae (ATCC 13883, ST3) | K. pneumoniae subsp. pneumoniae 1084 | ST1084 | Strain | ✓/× |
K. pneumoniae CG43 | ST86 | Strain | ✓/× | |
K. pneumoniae subsp. rhinoscleromatis SB3432 | ST67 | Strain | ✓/× | |
E. coli O103:H2 str. 12009 | ST17 | Strain | ×/ × | |
Mixture sample | E. coli UMN026 | ST597 | Strain | ✓/× |
75 % E. coli (ATCC 25922, ST73) | E. coli ETEC H10407 | ST48 | Strain | ✓/× |
S. aureus subsp. aureus HO 5096 0412 | ST22 | Strain | ✓/× | |
25 % S. aureus (ATCC 25923, ST243) | S. aureus subsp. aureus MRSA252 | ST36 | Strain | ✓/× |
S. aureus subsp. aureus T0131 | ST239 | Strain | ✓/× | |
Yersinia pestis | - | Species | ×/ |
The last column indicates if the detection is correct () or incorrect (×) at species/strain levels. The Metrichor was able to identify the species (with some false positives) but not the strains in our samples
* K. quasipneumoniae ATCC 700603 strain was recently re-classified from K. pneumoniae as K. quasipneumoniae [49] but has not been updated in most major databases