Introduction
Dysregulation of lipid metabolism is a hallmark of metabolic disease and cancer. While it is not yet clear how changes in lipid amounts and composition affect tumor cell growth, evidence indicates that these changes play a critical role in driving oncogenesis. [1,2] Given the strong epidemiological link between obesity and cancer, identification of the key molecular targets downstream of molecules that regulate lipid metabolism and link these disease states is needed to facilitate the development of new therapeutic strategies.
Phosphatase and tensin homologue (PTEN) is one of the most commonly mutated tumor suppressors in human cancer. PTEN functions as a lipid phosphatase; it contains a tensin-like domain and a catalytic domain that dephosphorylates phosphatidylinositol-3,4,5-trisphosphate (PtdIns [3,4,5]P3). Loss of PTEN results in the accumulation of this substrate at the cellular membrane, leading to recruitment of AKT and activation of numerous downstream signaling pathways that support cell growth and survival [3,4]. Extensive studies suggest that decreased PTEN activity also leads to metabolic reprogramming of cells to facilitate the synthesis of macromolecules needed to drive cell growth [5]. This is accomplished, in part, by the ability of PTEN to regulate both glucose and lipid metabolism. While the central role of PTEN in glucose metabolism has been well defined [6–9], less is known about how PTEN affects lipid metabolism [10,11]. Here we discuss emerging evidence supporting the idea that PTEN-mediated repression of genes that encode tRNAs and rRNAs is needed to suppress oncogenic transformation and maintain lipid and energy homeostasis. This involves Maf1, a transcription factor that functions downstream of PTEN to coordinately restrain RNA synthesis, lipid biosynthesis, and tumor growth.
PTEN signaling pathways affect tRNA and rRNA synthesis
While the primary function of the PTEN/PI3K/AKT signaling pathway is to control cellular metabolism [1,2], metabolic reprogramming through PTEN and its downstream targets appears to be a pre-requisite for rapid growth of cancer cells. Studies on the molecular functions of PTEN have primarily focused on the PTEN-controlled signaling pathways that alter the expression of protein-coding genes or non-coding (nc) RNAs, transcribed by RNA polymerase (pol) II [3,4]. However, the majority of cellular RNAs are synthesized by RNA pols I and III, whose major products are tRNAs and rRNAs. These RNAs, which constitute 85% of total cellular RNA, are essential for protein synthesis [12]. While the genes encoding these RNAs were long thought to serve constitutive rather than regulatory functions, many studies have now revealed that the increased expression of these transcripts is in fact a hallmark of transformed cells and human tumors [13–15]. Subsequent studies demonstrated that these RNA pol I- and III-mediated transcription processes are exquisitely regulated through various oncogenic and tumor suppressor proteins, including PTEN [15–20].
PTEN was first demonstrated to repress RNA pol III-dependent transcription through its lipid phosphatase activity and its ability to inhibit PI3K/AKT and downstream effectors, target of rapamycin complex 1 (TORC1) and S6 kinase (S6K) [20]. Analysis of the RNA pol III-specific transcription components revealed that PTEN expression leads to changes in the TBP (TATA-binding protein)-containing complex, TFIIIB. PTEN changes the phosphorylation state of this complex, disrupting the formation of the TFIIIB complex and its recruitment to promoters [20]. PTEN was similarly shown to repress RNA pol I-dependent transcription through its inhibition of the PI3K/TORC1/S6K pathway [21]. In this case, PTEN acts to dissociate TBP from the promoter, thereby disrupting the RNA pol I-specific TBP-containing SL-1 complex. In addition, inhibition of this pathway results in inactivation of the RNA pol I-specific factors, TIF-1A/RRN3 [22] and UBF [23], further contributing to transcription repression. Thus, multiple RNA pol I and III transcription components are subject to PTEN/PI3K/TORC1 modulation (Figure 1, Key figure). This highlights the multiple mechanisms that are used for restraining the synthesis of tRNAs and rRNAs in order to ultimately control cellular growth properties.
Given that dysregulation of RNA pol I- and III-dependent gene activity may be important drivers of cancer development (see Box 1), is targeting these transcription processes a viable strategy for cancer therapy? Genetically engineered mouse models of leukemia and lymphoma revealed strong sensitivity and selectivity in tumor cell death relative to normal cells with treatment of the RNA pol I inhibitor, CX-5461 [24]. Currently, clinical trials of this small molecule are underway in patients with lymphoma and leukemia [25]. Work on hematological malignancies, which are sensitive to inhibition of RNA pol I transcription, has so far revealed that aberrant myc expression and p53 status are key predictors of sensitivity to RNA pol I inhibition therapy [24,26]. However, further work will be needed to determine the feasibility of this approach in other tumor types and to learn how dysregulation of other proteins, such as PTEN, may affect efficacy. Together, these studies form a compelling argument that the aberrant activation of RNA pol I- and RNA pol III-specific factors by oncogenic signaling pathways and the inactivation of tumor suppressors drives cancer development and that targeting these processes may provide effective new therapeutic strategies to treat cancer.
BOX 1. Regulation of RNA pol III-mediated transcription, protein synthesis, and oncogenesis.
Although dysregulation of the RNA pol III-dependent transcription process is a hallmark of cancer cells [13–15], it is important to understand whether this actually contributes to cancer development. Evidence so far indicates that the observed increases in transcription contribute to oncogenic transformation [63,64]. One study revealed that c-myc-transformed cells required increases in RNA pol III dependent-transcription for anchorage-independent growth and tumor formation in mice [65]. So how might changes in this transcription process and its products drive oncogenesis? While the specific changes in RNA pol III transcription that lead to cellular transformation have not been clearly elucidated, emerging evidence supports the idea that alterations in tRNA gene expression and activity leads to changes in the cellular composition of functional tRNAs [66]. Analysis of tRNA pools showed that there are marked differences in types and amounts of tRNAs in different tissues [67,68]. In proliferating cells, the tRNAs that are induced are typically repressed in differentiating cells, and these tRNAs contain anticodons corresponding to a codon-usage signature that encompasses proliferation-related genes [69]. Furthermore, tRNAiMet overexpression in human cell lines can independently produce significant changes in tRNA expression profiles [70]. New evidence also indicates that the maturation of tRNA transcripts is a key regulatory step that can affect the population of functional tRNAs in fission yeast. When tRNA synthesis is induced, at least one tRNA modification enzyme, Trm1, becomes limiting [71]. This results in hypomodification of certain tRNAs and impact tRNA function in translation. Collectively, these studies support the idea that changes in RNA pol III-dependent transcription can lead to selective alterations in the abundance and activities of tRNAs. These changes in tRNAs, together with the mRNA codon-usage demand, could then result in selective changes in protein translation. In addition to tRNAs, alterations in other RNA pol III transcribed products that regulate protein processing (7SL RNA), mRNA splicing (U6 RNA) and transcription elongation (7SK RNA) could also conceivably lead to changes in the population of functional proteins. A large body of work has identified specific changes in translation initiation factors in cancer cells that alter mRNA translation [72,73]. Thus, there are multiple mechanisms by which protein synthesis may be dysregulated in cancer cells, including changes in the synthesis of RNA pol I and III products, to drive cancer development.
The transcription factor, Maf1, functions as a tumor suppressor
Maf1 is a central repressor of genes transcribed by RNA pol III. It functions to restrict the synthesis of these cellular RNA products in response to low nutrient availability and cellular stress [27,28]. Maf1 associates with RNA pol III both on and off the DNA and inhibits pre-initiation complex assembly by polymerase molecules that have dissociated from the DNA template [29,30]. The fact that Maf1 represses RNA pol III gene promoters is well established and conserved in all eukaryotes. Less well defined is Maf1’s ability to regulate transcription of RNA pol II transcribed genes [31–35]. Under certain growth conditions, deletion of Maf1 results in decreased transcription of gluconeogenetic genes in S. cerevisiae. However it is unclear whether Maf1 functions directly or indirectly on these genes [36]. Mammalian Maf1 occupies the promoters and inhibits transcription of select RNA pol II-dependent growth promoting genes that contain Elk-1 binding sites [31]. In this case, recruitment of Maf1 to these promoters was reciprocal with that of Elk-1. Studies in C. elegans and mammalian cells showed that Maf1 inhibits expression of the TBP gene, a central transcription initiation factor that is used by all nuclear RNA pols [31,33]. Maf1-mediated changes in TBP expression can indirectly affect genes that are sensitive to the concentration of TBP, including RNA pol I-dependent genes [31], although this is context-dependent [37]. Maf1 was also reported to induce transcription of the PTEN promoter [35]. In another example, the effect of Maf1 on specific RNA pol II genes involved changes in RNA pol III and Maf1 recruitment to a promoter-associated short interspersed element (SINE) [34]. However Maf1 does not contain a canonical DNA binding domain and there is no direct demonstration of Maf1 alone binding to DNA. Thus, the mechanism by which Maf1 is recruited to RNA pol II-dependent promoters is not known. Genome-wide detection of mammalian Maf1 in chromatin has been problematic and one study detected Maf1 at RNA pol III promoters but not RNA pol II promoters [38]. Collectively, current studies indicate that Maf1 is bound to both RNA pol II- and III-dependent promoters but more studies are needed to elucidate what contacts specify Maf1 recruitment to these promoters and whether common or distinct mechanisms are used.
Evidence supports that Maf1 is an important downstream effector of PTEN’s tumor suppressor function. Maf1 overexpression suppresses the anchorage-independent growth of PTEN-deficient human U87 glioblastoma cells with changes in cytoskeletal organization [31]. In addition, Maf1 overexpression in HT-29 colon carcinoma cells results in a decrease in both anchorage-independent growth and tumorigenicity in athymic mice [32]. Diminished nuclear Maf1 protein expression was also observed in several PTEN-negative human liver and prostate tumors compared to normal tissue [32]. Further analyses showed that Maf1 expression is frequently down-regulated in different subtypes of primary human liver cancers [35]. However, mice that are completely deficient for Maf1 were not prone to developing cancers [37]. Maf1 represses AKT signaling by increasing PTEN expression and this contributes to its ability to inhibit liver cancer cell proliferation [35]. Thus, Maf1 both represses the expression of genes that promote an oncogenic state, and it enhances PTEN expression. Together, these results demonstrate that Maf1 functions as a tumor suppressor.
Maf1 regulation
Several studies have revealed that mammalian Maf1 activity is regulated through post-translational modifications (PMTs). Phosphorylation of mammalian Maf1 TORC1 renders it less repressive of transcription [39–41]. Small ubiquitin-related modifier (SUMO) modification of Maf1 results in repressed transcription and cellular growth. Sentrin-specific protease 1 (SENP1) is the deSUMOylase that regulates this SUMO modification [42]. As SENP1 is overexpressed in a variety of human cancers [43], Maf1 could be an important SENP1 target that contributes to its oncogenic properties. In addition to PMTs, Maf1 expression is also subject to regulation by PTEN. Compared with PTEN-expressing cells, PTEN-deficient mouse tissues and cancer cell lines displayed decreased Maf1 protein expression. PTEN regulation of Maf1 was shown to involve the PI3K/AKT and forkhead box protein O1 (FOXO1) signaling pathways, through which changes in Maf1 expression led to reciprocal changes in RNA pol III-dependent transcription [33]. Importantly, this regulatory pathway is conserved in evolution. Loss of expression of the PTEN ortholog abnormal dauer formation (DAF)-18 in C. elegans or the FOXO ortholog DAF-16 also resulted in alterations in Maf1 expression, with converse changes in RNA pol III transcription [33]. These studies elaborate a new role for FOXO1 in repressing RNA pol III-dependent transcription and uncover another mechanism by which PTEN inhibits this transcription process through its ability to positively control Maf1 expression. Thus, FOXO1 and mTORC1 are important downstream targets of PTEN that play opposing roles in regulating the cellular activity of Maf1 (Figure 1).
Roles of PTEN targets, mTORC1 and FOXO1, in lipid biosynthesis
As a major negative regulator of PI3K/AKT signaling, PTEN plays a fundamental role in both lipid and glucose metabolism [1,2]. The increased de novo lipogenesis, prevalent in tumor cells, has been less studied. Increased cancer cell proliferation requires rapid biosynthesis of lipids to generate new membranes and serve other structural roles. Lipids themselves also serve as signaling molecules and can have a direct effect on cancer cell growth. Furthermore, lipids serve as substrates for PMTs. Collectively, lipids play a prominent role in promoting tumorigenesis [44]. Lipid biosynthesis or lipogenesis occurs by inducing the expression of the lipogenic enzymes. These include fatty acid synthase (Fasn), a rate-limiting enzyme for lipid biosynthesis, and acetyl-coA carboxylase (Acc). Emerging studies demonstrate that inhibition of these enzymes limits the growth of cancer cells and reduces tumorigenesis in various models [45,46]. As a result, small molecule inhibitors of Fasn are currently under development as anticancer therapeutic agents [47–49].
Two key downstream targets of AKT, mTORC1 and FOXO1, play critical and opposing roles in lipogenesis by controlling the expression of stearyl receptor element binding protein (SREBP), a key transcription factor that promotes lipogenic enzyme gene induction. While FOXO1 represses SREBP expression [50], its role in lipid metabolism in mouse models is still ambiguous. AKT phosphorylates FOXO1 at three sites, preventing its nuclear localization and target gene regulation. However, expression of different mutant FOXO1 proteins, which results in nuclear accumulation of FOXO1, displayed opposing phenotypes. Expression of FOXO1 mutated at a single AKT phosphorylation site, S253, led to an increase in intracellular lipid accumulation and fatty liver disease. However, possible changes in lipogenesis were not evaluated [51]. In contrast, mutation of all three AKT phosphorylation sites led to suppression of lipogenic gene expression [52]. The role of FOXO1-mediated regulation of Fasn also differs depending on whether AKT signaling is induced [53]. Overall, the current view is that the transcriptional repression function of FOXO1 is needed to suppress lipogenesis. When FOXO1 is phosphorylated, together with either inactivation or deletion of AKT, lipids can accumulate. In contrast, activation of mTORC1 promotes lipogenesis. This is mediated by the ability of TORC1 to stimulate SREBP expression, processing, and its nuclear localization [54]. However, deletion of the negative regulator of mTORC1, tuberous sclerosis proteins 1 and 2 (TSC1/2), and the resultant hyperactivation of mTORC1, are not sufficient to trigger SREBP activation when AKT is not induced [55]. Together, these results indicate that there are unidentified signals that dictate the ability of FOXO1 and mTORC1 to regulate lipogenesis and that more studies are needed to elucidate their roles in lipid metabolism.
Maf1 regulates lipid metabolism
The idea that FOXO1 and mTORC1 signaling molecules control Maf1 expression and activity, respectively, suggested that Maf1 might regulate the levels of intracellular lipids. When Maf1 is knocked-down in mammalian cell lines, an increase in both the expression of the lipogenesis enzymes Fasn and Acc and intracellular lipid accumulation is observed [32]. Consistent with these results, mice fed a high carbohydrate diet to induce insulin signaling and lipogenesis displayed a significant decrease in Maf1 expression in the liver. Overexpression of Maf1 in the livers of these mice via adenoviral delivery blocked increases in Fasn, Acc and triglycerides. The ability of Maf1 to control intracellular lipid accumulation is conserved. In yeast, Maf1 affects both glucose and lipid homeostasis [56]. Manipulation of Maf1 expression in C. elegans resulted in altered lipid storage in the intestine and hypodermis [33]. This is at least partially a result of altered expression of Fasn and Acc, which occurred concomitantly with the expression of RNA pol III transcripts. As lipid homeostasis is controlled through additional mechanisms that involve degradation and transport, further analysis will be needed to determine whether Maf1 also regulates other aspects of lipid metabolism. Thus, Maf1 is an important downstream target of TORC1 and FOXO1 that contributes to their ability to regulate intracellular lipids. FOXO1 represses lipogenesis by positively regulating Maf1 expression [32,33] and by negatively controlling SREBP expression [50]. In contrast, mTORC1 induces lipogenesis by phosphorylating Maf1 to repress its activity [39–41] and by inducing SREBP expression [54]. Together, these studies identify a new mechanism by which FOXO1 and mTORC1 coordinately control lipogenesis through Maf1 and define a new evolutionarily conserved role for Maf1 as an important downstream effector of these signaling proteins in the regulation of intracellular lipids (Figure 1).
On a molecular level, how does Maf1 negatively regulate lipogenesis? Examination of genes known to promote lipid biogenesis revealed that Maf1 repressed the expression of the lipogenic enzymes Fasn and Acc [32,33]. In mammalian cells, Maf1-mediated repression was shown to involve its recruitment to the Fasn gene promoter without affecting the expression or occupancy of SREBP [32]. Thus, even under conditions in which SREBP expression is induced, Maf1 is able to restrain the activation of the lipogenic genes. While this function of Maf1 is, at least in part, responsible for its ability to regulate intracellular lipid accumulation, the contributions of other Maf1 targeted genes remain to be determined. It will be particularly important to examine whether specific Maf1-mediated changes in RNA pol III-dependent transcription are involved in regulating intracellular lipids.
Lessons from mouse models
Recent studies reported that a whole body knockout of Maf1 in mice resulted in a lean phenotype [37]. The Maf1-deficient mice were found to be resistant to high fat diet-induced obesity and fatty liver disease. Energy expenditure is increased via several mechanisms. Maf1-deficient mice exhibited increased synthesis of precursor tRNAs in a variety of tissues without significant changes in the total amounts of mature tRNAs. Although increases in lipogenesis were observed in the livers of these mice, there was also an increase in lipid consumption through enhanced autophagy, resulting in futile cycling of hepatic lipids [37]. The study suggests that given the high-energy demand for the increased synthesis of these macromolecules, Maf1-deficient cells do not accumulate lipids to the extent seen in wild-type cells. Thus, metabolic efficiency is compromised in the mice lacking Maf1. Interestingly, increased Maf1 expression in C. elegans and decreased intracellular lipid accumulation resulted in reduced fecundity and reproductive success, whereas the same was observed in mice when Maf1 was inactivated [33,37]. These results identify another biological function for Maf1 in reproduction that may be a consequence of its ability to control lipid homeostasis. Mouse models in which Maf1 is inactivated in a tissue-specific manner are needed to identify potential non-cell-autonomous effects of Maf1. Notably, in Drosophia, down-regulation of Maf1 resulted in accelerated development and increased body size. This was due to a non cell-autonomous effect of Maf1 inhibition in the fat body that led to enhanced systemic insulin signaling [57].
Studies have identified energy-dependent nucleolar silencing complex (eNoSC) as an important negative regulator of RNA pol I-transcribed genes that senses cellular energy status to control rRNA synthesis [58]. Upon nutrient deprivation, the energy-dependent change in the NAD+/NADH ratio regulates eNoSC to epigenetically repress rRNA synthesis by establishing heterochromatin [58]. In doing so, eNoSC protects cells from energy deprivation-dependent apoptosis. The nucleomethylin (NML) component of this complex is required for silencing of rDNA genes. Similar to the phenotype observed with the whole body knockout of Maf1, liver-specific knockout of NML led to protection from diet-induced fatty liver and obesity in mice [59]. Given that the rate-limiting step for ribosome biosynthesis is rRNA transcription, which demands major energy expenditure, repression of rRNA synthesis is critical in order to maintain metabolic efficiency. Together, studies from the Maf1- and NML-deficient mouse models support the idea that both proteins coordinately repress genes that are major consumers of nucleotides, which are energetically costly to synthesize. By repressing the synthesis of these RNAs, this then allows for the accumulation of lipids and energy storage. Loss of these proteins, and the resulting high transcription rate of these genes, prevents appropriate control of intracellular energy consumption.
The discovery that Maf1-deficient mice cannot accumulate intracellular lipids under a high fat diet to the same extent as wild-type mice appears incongruent with the results demonstrating that Maf1 inhibits intracellular lipid accumulation in mice fed a high carbohydrate diet. However, there are several potential explanations for these seemingly opposing results. A complete whole body deletion of Maf1 may have different effects compared with a tissue-specific deletion or knockdown of Maf1. The lack of Maf1 during embryonic development could also affect the differentiation of cells that store lipids and result in altered lipid metabolism. Furthermore, long-term versus transient Maf1 deficiency and the different high carbohydrate/high fat diets that might contribute to these phenotypic differences need to be further examined.
Concluding Remarks
Recent studies have defined a new role for Maf1, a key downstream target of PTEN and an established global repressor of RNA pol III-transcribed genes, in lipid metabolism. Maf1 is regulated by PTEN and its downstream targets mTORC1 and FOXO1, and represses genes that dictate translational capacity and the synthesis of lipids de novo. Given that both of these processes are highly dysregulated in cancer, Maf1 is likely a critical component that coordinately represses these gene expression pathways to suppress tumorigenesis (Figure 1). Current studies indicate that both Maf1 and nicotinamide mononucleotide adenylyltransferase (NMNAT1), a positive effector of eNoSC activity, may function as tumor suppressors. Maf1 expression is diminished in human liver cancers [32, 35] while the NMNAT1 locus frequently undergoes heterozygous deletion in human cancers [60]. The ability of Maf1 to control intracellular lipids further suggests that it may also be dysregulated in metabolic diseases, although studies are necessary to assess this possibility. Given the well-established link between obesity and cancer [61,62], and the role of Maf1 in lipid metabolism and oncogenesis, Maf1 likely serves as a molecular link between these diseases.
While Maf1 and components of eNoSC may play central roles in suppressing an oncogenic state, Maf1- or NML-deficiency prevents diet-induced obesity in mice. Thus, it is not yet clear whether strategies to enhance or inhibit Maf1 or NML function will be useful for treating metabolic disease or cancer. Clearly more studies are needed to understand the complex roles of these proteins and the contexts in which they function to regulate lipid metabolism and oncogenesis. Nevertheless, compelling evidence supports the idea that the ability of rRNA and tRNA synthesis to control biosynthetic capacity, once thought to be limited to protein synthesis, now encompasses a critical new function in lipid metabolism. Future studies are needed to determine how changes in the synthesis of these RNAs, through perturbations of the PTEN/PI3K signaling pathway, can influence intracellular lipid accumulation and metabolic disease.
TRENDS BOX.
While epidemiological links exists between obesity and cancer, the basis for this is unclear. Maf1 represents a novel link between lipid metabolism and oncogenesis, providing a molecular explanation for the strong association between these two diseases.
PTEN and downstream targets FOXO1 and mTORC1 play critical roles in lipid biogenesis. Maf1, a global repressor of tRNA and 5S rRNA transcription, is a target of these signaling events and key player in their ability to control intracellular lipid accumulation.
While tRNAs and rRNAs were thought to possess only constitutive functions for protein translation, new studies suggest that their tight regulation is a critical determinant for cells to be able to store lipids. Restraining their synthesis is important for maintaining metabolic efficiency and lipid homeostasis.
Acknowledgments
We would like to thank R. Maxson and members of the laboratory of D. Johnson for helpful discussions.
Footnotes
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