Skip to main content
Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2016 Sep 5;72(Pt 10):1380–1382. doi: 10.1107/S2056989016013864

Crystal structure of 3,4a,7,7,10a-penta­methyl-3-vinyl­dodeca­hydro-1H-benzo[f]chromen-9-ol isolated from Sideritis perfoliata

Ísmail Çelik a, Cem Cüneyt Ersanlı b, Rahmi Köseoğlu c, Hüseyin Akşit d, Ramazan Erenler d, Ibrahim Demirtaş e, Mehmet Akkurt c,*
PMCID: PMC5050758  PMID: 27746923

In the two independent mol­ecules in the asymmetric unit of the title compound, the cyclo­hexane rings adopt a chair conformation, while the oxane rings are also puckered. In the crystal, O—H⋯ O hydrogen bonds connect adjacent mol­ecules, forming a C(6) helical chain running along the [100] direction.

Keywords: crystal structure, cyclo­hexane ring, semi-empirical PM3 method, HOMO, LUMO

Abstract

The asymmetric unit of the title compound, C20H34O2, contains two crystallographically independent mol­ecules (1 and 2) with similar conformations. In both mol­ecules, the cyclo­hexane rings adopt a chair conformation, while the oxane rings are also puckered. In the crystal, O—H⋯O hydrogen bonds connect adjacent mol­ecules, forming C(6) helical chains located around a 21 screw axis and running along the crystallographic a axis. The packing of these chains is governed only by van der Waals inter­actions. Semi-empirical PM3 quantum chemical calculations are in a satisfactory agreement with the structural results of the X-ray structure analysis. The absolute structure was indeterminate in the present experiment.

Chemical context  

The Sideritis genus belonging to the Lamiaceae family is represented by more than 150 species in the world (Duman 2000). Sideritis species have been reported to have a broad spectrum of biological activities such as anti-inflammatory, anti-oxidant, anti-ulcerogenic, analgesic, anti­microbial, anti­proliferative, anti-HIV and anti­feedant activities (González-Burgos et al. 2011), and they have been consumed as teas, as flavoring agents, for therapeutic purposes, etc. In particular, Sideritis teas have been used for gastrointestinal disorders such as stomach ache and indigestion, to alleviate common colds, fever, flu and sore throats (Topçu et al. 2002). Phytochemical investigations of the species have revealed the presence of terpenes (Fraga et al. 2003), flavonoids, essential oils and other secondary metabolites (Barberan et al. 1985). As part of our studies in this area, we now describe the isolation and structure of the title compound, (I).graphic file with name e-72-01380-scheme1.jpg

Structural commentary  

In the title compound (Fig. 1), the asymmetric unit contains two crystallographically independent mol­ecules, 1 and 2, with a similar conformations. In mol­ecule 1, the cyclo­hexane ring (C1–C6) attached to the OH group and the central cyclo­hexane ring (C1/C6/C9–C12) each adopt a chair conformation with puckering parameters Q T = 0.536 (3) Å, θ = 0.0 (3), φ = 270 (81)° and Q T = 0.584 (3) Å, θ = 4.4 (3), φ = 59 (4)°, respectively. The oxane ring (O2/C11/C12/C15–C17) is also puckered, with puckering parameters Q T = 0.551 (3) Å, θ = 12.1 (3) and φ = 133.5 (16)°. The equivalent rings in mol­ecule 2 (C21–C16, C21/C26/C29–C32 and O4/C31/C32/C35–C37) have as puckering parameters Q T = 0.534 (3) Å, θ = 1.9 (3), φ = 296 (11)°, Q T = 0.583 (3) Å, θ = 5.0 (3), φ = 72 (3)° and Q T = 0.554 (3) Å, θ = 11.9 (3), φ = 127.2 (15)°, respectively. Bond lengths and angles are within normal range, comparable with each other and with those reported for similar structures in the literature (e.g., Evans et al., 2011).

Figure 1.

Figure 1

A view of the title compound, showing the atom-numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 30% probability level. The minor component of the disorder is not shown for clarity.

Supra­molecular features  

Inter­molecular O—H. . . O hydrogen bonds connect adjacent mol­ecules, forming C(6) helical chains located around a 21 screw axis running along the crystallographic a axis (Table 1 and Fig. 2). The crystal packing of these chains is governed only by van der Waals inter­actions. The two asymmetric molecules lead to pseudo-41 symmetry in space group P212121.

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1O⋯O3 0.80 (4) 1.99 (4) 2.784 (3) 170 (4)
O3—H3O⋯O1i 0.81 (4) 2.00 (4) 2.804 (3) 169 (4)

Symmetry code: (i) Inline graphic.

Figure 2.

Figure 2

A view along the a axis of the crystal packing of the title compound. H atoms not involved in hydrogen bonding (dashed lines) have been omitted for clarity.

Theoretical calculations  

PM3 (parameterized model number 3) is a semi-empirical method for the quantum calculation of the mol­ecular electronic structure in computational chemistry. It is based on the neglect of differential diatomic overlap integral approximation. The semi-empirical PM3 parameterization used in the MOPAC program is widely used to derive charges, dipole moments and bond lengths. The computed quantum chemical descriptors include bond lengths, bond angles, torsion angles, atom charges, HOMO and LUMO energy levels, dipole moment, polarizability, etc. In the present case, the geometry of the mol­ecule of the title compound was calculated with a semi-empirical PM3 method (Stewart, 1985). A spatial view is included in the Supporting information.

The calculated net charges at atoms O1 and O2 are −0.257 and −0.309 e, respectively. The total energy and dipole moment of the title mol­ecule are −3514.7 eV and 1.695 Debye. The HOMO and LUMO energy levels are −10.36 and 2.71 eV, respectively.

Calculated values for the geometrical parameter are consistent with those obtained by the X-ray structure determination, within the error limits (see Table S1 in the Supporting information), with the sole exception of the angles in the meth­oxy groups. This may be ascribed to the steric inter­actions between adjacent mol­ecules in the crystal structure.

Synthesis and crystallization  

The aerial part of the plant material (5 g) was extracted with ethyl acetate (3 × 20 mL). After removal of the solvent by rotary evaporator, the extract was subjected to column chromatography (2.5 × 70 cm); sephadex LH-20 (50 g) was used as a stationary phase and methanol was used as a mobile phase with a 0.25 ml min−1 flow rate. 16 fractions, each of which was 150 mL, were collected. Similar fractions were combined according to the TLC profile. Further purification was carried out with silica gel column chromatography to isolate the title compound. Colourless prisms were recrystallized from ethanol solution.

Refinement  

Crystal data, data collection and structure refinement details are summarized in Table 2. H atoms bound to oxygen were found from difference Fourier maps and their positional parameters were refined with U iso fixed at 1.5 times U eq(O). H atoms bound to carbon were positioned geometrically and allowed to ride on their parent atoms with U iso = 1.2U eq(C) (C—H = 0.93 Å for aromatic, 0.97 Å for methyl­ene and 0.98 Å for methine) and with U iso = 1.5U eq(C) (C—H = 0.96 Å) for methyl H atoms. The absolute structure was indeterminate in the present experiment.

Table 2. Experimental details.

Crystal data
Chemical formula C20H34O2
M r 306.47
Crystal system, space group Orthorhombic, P212121
Temperature (K) 296
a, b, c (Å) 7.1114 (4), 16.3899 (12), 32.812 (2)
V3) 3824.4 (4)
Z 8
Radiation type Mo Kα
μ (mm−1) 0.07
Crystal size (mm) 0.14 × 0.11 × 0.08
 
Data collection
Diffractometer Bruker APEXII CCD
Absorption correction Multi-scan (SADABS; Sheldrick, 2003)
T min, T max 0.635, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 36728, 9449, 5384
R int 0.074
(sin θ/λ)max−1) 0.667
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.060, 0.130, 1.02
No. of reflections 9449
No. of parameters 413
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.17, −0.23
Absolute structure Flack (1983), 4144 Friedel pairs
Absolute structure parameter 0.4 (15)

Computer programs: APEX2 and SAINT (Bruker, 2007), SHELXS97 (Sheldrick 2008), SHELXL2014 (Sheldrick 2015), WinGX (Farrugia, 2012) and PLATON (Spek, 2009).

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989016013864/bg2593sup1.cif

e-72-01380-sup1.cif (1.1MB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016013864/bg2593Isup2.hkl

e-72-01380-Isup2.hkl (750KB, hkl)

Supporting information file. DOI: 10.1107/S2056989016013864/bg2593sup3.pdf

e-72-01380-sup3.pdf (103.9KB, pdf)

Supporting information file. DOI: 10.1107/S2056989016013864/bg2593sup4.tif

Supporting information file. DOI: 10.1107/S2056989016013864/bg2593Isup5.cml

CCDC reference: 1501445

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

The authors are indebted to the X-ray laboratory of Sinop University Scientific and Technological Applied and Research Center, Sinop, Turkey, for use of the X-ray diffractometer.

supplementary crystallographic information

Crystal data

C20H34O2 F(000) = 1360
Mr = 306.47 Dx = 1.065 Mg m3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 7578 reflections
a = 7.1114 (4) Å θ = 2.9–25.0°
b = 16.3899 (12) Å µ = 0.07 mm1
c = 32.812 (2) Å T = 296 K
V = 3824.4 (4) Å3 Prism, colourless
Z = 8 0.14 × 0.11 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer 5384 reflections with I > 2σ(I)
φ and ω scans Rint = 0.074
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) θmax = 28.3°, θmin = 2.9°
Tmin = 0.635, Tmax = 0.746 h = −8→9
36728 measured reflections k = −19→21
9449 independent reflections l = −43→42

Refinement

Refinement on F2 H atoms treated by a mixture of independent and constrained refinement
Least-squares matrix: full w = 1/[σ2(Fo2) + (0.0617P)2 + 0.0101P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.060 (Δ/σ)max < 0.001
wR(F2) = 0.130 Δρmax = 0.17 e Å3
S = 1.02 Δρmin = −0.23 e Å3
9449 reflections Absolute structure: Flack (1983), 4144 Friedel pairs
413 parameters Absolute structure parameter: 0.4 (15)
0 restraints

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > 2sigma(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.0636 (3) 0.76038 (13) 0.54574 (6) 0.0525 (8)
O2 0.4700 (3) 0.53531 (14) 0.71395 (6) 0.0656 (8)
C1 0.2450 (3) 0.70848 (15) 0.65200 (7) 0.0323 (8)
C2 0.1533 (4) 0.69891 (16) 0.60996 (8) 0.0388 (9)
C3 0.1457 (4) 0.77677 (17) 0.58487 (8) 0.0400 (9)
O3 0.3152 (3) 0.65702 (13) 0.50623 (6) 0.0548 (8)
C4 0.3381 (4) 0.81502 (18) 0.58077 (8) 0.0461 (10)
O4 0.7389 (3) 0.33641 (12) 0.38715 (6) 0.0558 (7)
C5 0.4396 (4) 0.83089 (17) 0.62121 (8) 0.0440 (10)
C6 0.4392 (3) 0.75033 (16) 0.64591 (8) 0.0358 (8)
C7 0.6443 (5) 0.8531 (2) 0.61049 (11) 0.0723 (12)
C8 0.3532 (5) 0.90435 (19) 0.64330 (10) 0.0639 (11)
C9 0.5515 (4) 0.75220 (19) 0.68563 (9) 0.0510 (10)
C10 0.5874 (4) 0.6660 (2) 0.70119 (9) 0.0576 (11)
C11 0.4068 (4) 0.61840 (17) 0.70812 (8) 0.0467 (10)
C12 0.2877 (4) 0.62125 (16) 0.66896 (7) 0.0367 (8)
C13 0.1074 (4) 0.75550 (18) 0.67990 (8) 0.0460 (10)
C14 0.3115 (5) 0.6485 (2) 0.74714 (8) 0.0598 (11)
C15 0.1228 (5) 0.56256 (17) 0.67286 (9) 0.0531 (11)
C16 0.1983 (6) 0.47707 (19) 0.67885 (10) 0.0679 (14)
C17 0.3343 (6) 0.4701 (2) 0.71481 (10) 0.0713 (14)
C18 0.4553 (8) 0.3932 (3) 0.71083 (15) 0.118 (2)
C19 0.2373 (8) 0.4663 (2) 0.75573 (12) 0.0880 (16)
C20 0.0645 (9) 0.4471 (3) 0.76331 (15) 0.128 (3)
C21 0.5044 (3) 0.44774 (15) 0.47669 (7) 0.0333 (8)
C22 0.4083 (4) 0.53118 (15) 0.47366 (8) 0.0388 (9)
C23 0.3984 (4) 0.57841 (16) 0.51329 (8) 0.0424 (9)
C24 0.5903 (4) 0.58643 (18) 0.53327 (9) 0.0519 (10)
C25 0.6949 (4) 0.50615 (19) 0.53944 (8) 0.0492 (10)
C26 0.6985 (3) 0.46057 (16) 0.49801 (8) 0.0378 (9)
C27 0.6092 (6) 0.4573 (2) 0.57489 (9) 0.0747 (15)
C28 0.8980 (5) 0.5281 (3) 0.55159 (12) 0.0800 (16)
C29 0.8158 (4) 0.38262 (18) 0.49711 (9) 0.0502 (10)
C30 0.8551 (4) 0.35654 (18) 0.45324 (9) 0.0514 (10)
C31 0.6751 (4) 0.34233 (16) 0.42919 (8) 0.0419 (9)
C32 0.5496 (4) 0.41801 (15) 0.43262 (8) 0.0356 (8)
C33 0.3720 (4) 0.38850 (17) 0.49895 (8) 0.0453 (10)
C34 0.5885 (5) 0.26093 (16) 0.44237 (9) 0.0542 (10)
C35 0.3826 (4) 0.40988 (18) 0.40359 (8) 0.0478 (10)
C36 0.4571 (5) 0.4026 (2) 0.36037 (9) 0.0619 (11)
C37 0.6014 (5) 0.3344 (2) 0.35483 (9) 0.0637 (11)
C38 0.7165 (7) 0.3489 (3) 0.31656 (11) 0.0987 (18)
C39 0.5169 (7) 0.2505 (2) 0.35154 (12) 0.0843 (16)
C40 0.3428 (8) 0.2309 (3) 0.34365 (15) 0.122 (2)
H1O 0.125 (6) 0.727 (2) 0.5337 (12) 0.0980*
H2A 0.22230 0.65800 0.59470 0.0470*
H2B 0.02610 0.67880 0.61370 0.0470*
H3 0.06420 0.81560 0.59910 0.0480*
H4A 0.32520 0.86640 0.56640 0.0550*
H4B 0.41600 0.77950 0.56420 0.0550*
H6 0.50890 0.71210 0.62860 0.0430*
H7A 0.70930 0.86980 0.63470 0.1080*
H7B 0.64500 0.89690 0.59110 0.1080*
H7C 0.70600 0.80640 0.59900 0.1080*
H8A 0.40310 0.90760 0.67040 0.0960*
H8B 0.21910 0.89800 0.64460 0.0960*
H8C 0.38330 0.95340 0.62870 0.0960*
H9A 0.67060 0.77950 0.68110 0.0610*
H9B 0.48240 0.78280 0.70600 0.0610*
H10A 0.66470 0.63700 0.68160 0.0690*
H10B 0.65680 0.66890 0.72660 0.0690*
H12 0.36830 0.59640 0.64820 0.0440*
H13A 0.17640 0.78130 0.70150 0.0690*
H13B 0.01770 0.71820 0.69130 0.0690*
H13C 0.04270 0.79630 0.66420 0.0690*
H14A 0.18570 0.62730 0.74840 0.0900*
H14B 0.30740 0.70710 0.74710 0.0900*
H14C 0.38140 0.63000 0.77040 0.0900*
H15A 0.04510 0.57790 0.69590 0.0640*
H15B 0.04600 0.56470 0.64840 0.0640*
H16A 0.26260 0.46010 0.65420 0.0820*
H16B 0.09370 0.44010 0.68320 0.0820*
H18A 0.54110 0.39030 0.73340 0.1780*
H18B 0.52490 0.39530 0.68580 0.1780*
H18C 0.37570 0.34590 0.71080 0.1780*
H19 0.31090 0.47940 0.77820 0.1050*
H20A −0.01600 0.43330 0.74210 0.1540*
H20B 0.02070 0.44690 0.79000 0.1540*
H3O 0.376 (6) 0.680 (2) 0.4887 (11) 0.0840*
H22A 0.47530 0.56390 0.45380 0.0470*
H22B 0.28140 0.52330 0.46360 0.0470*
H23 0.31650 0.54830 0.53200 0.0510*
H24A 0.57450 0.61250 0.55960 0.0620*
H24B 0.66760 0.62210 0.51660 0.0620*
H26 0.76590 0.49780 0.47980 0.0450*
H27A 0.67140 0.40550 0.57700 0.1120*
H27B 0.47760 0.44880 0.56990 0.1120*
H27C 0.62520 0.48710 0.59980 0.1120*
H28A 0.96390 0.47950 0.55950 0.1200*
H28B 0.89580 0.56560 0.57400 0.1200*
H28C 0.96080 0.55290 0.52880 0.1200*
H29A 0.74900 0.33940 0.51120 0.0600*
H29B 0.93390 0.39180 0.51120 0.0600*
H30A 0.92890 0.39840 0.43980 0.0620*
H30B 0.92870 0.30670 0.45340 0.0620*
H32 0.62550 0.46210 0.42090 0.0430*
H33A 0.44450 0.34590 0.51140 0.0680*
H33B 0.28550 0.36510 0.47980 0.0680*
H33C 0.30330 0.41750 0.51950 0.0680*
H34A 0.54640 0.26490 0.47010 0.0820*
H34B 0.48360 0.24830 0.42510 0.0820*
H34C 0.68110 0.21860 0.44020 0.0820*
H35A 0.30950 0.36190 0.41050 0.0570*
H35B 0.30180 0.45740 0.40590 0.0570*
H36A 0.51450 0.45400 0.35270 0.0740*
H36B 0.35230 0.39290 0.34210 0.0740*
H38A 0.77500 0.40160 0.31800 0.1480*
H38B 0.63560 0.34670 0.29320 0.1480*
H38C 0.81150 0.30760 0.31430 0.1480*
H39 0.59900 0.20710 0.35570 0.1010*
H40A 0.25380 0.27150 0.33920 0.1460*
H40B 0.30770 0.17630 0.34240 0.1460*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0556 (13) 0.0615 (14) 0.0404 (12) 0.0157 (11) −0.0096 (10) 0.0025 (10)
O2 0.0720 (15) 0.0624 (15) 0.0625 (14) 0.0127 (13) −0.0031 (12) 0.0215 (12)
C1 0.0288 (13) 0.0360 (15) 0.0321 (14) 0.0008 (11) 0.0022 (11) −0.0020 (11)
C2 0.0342 (15) 0.0406 (15) 0.0417 (15) −0.0004 (12) −0.0010 (12) 0.0001 (12)
C3 0.0392 (15) 0.0447 (16) 0.0361 (15) 0.0083 (13) −0.0022 (12) −0.0010 (12)
O3 0.0585 (14) 0.0481 (13) 0.0578 (13) 0.0106 (11) 0.0178 (11) −0.0004 (10)
C4 0.0497 (18) 0.0437 (17) 0.0450 (16) 0.0072 (14) 0.0078 (14) 0.0109 (13)
O4 0.0561 (13) 0.0539 (12) 0.0575 (13) 0.0036 (10) 0.0109 (11) −0.0072 (11)
C5 0.0401 (16) 0.0412 (17) 0.0506 (17) −0.0040 (13) 0.0038 (13) 0.0035 (13)
C6 0.0280 (13) 0.0409 (15) 0.0385 (14) 0.0009 (12) 0.0045 (12) −0.0010 (12)
C7 0.054 (2) 0.084 (2) 0.079 (2) −0.0273 (19) 0.0005 (18) 0.027 (2)
C8 0.079 (2) 0.0426 (18) 0.070 (2) −0.0066 (17) −0.0012 (19) −0.0047 (16)
C9 0.0372 (16) 0.065 (2) 0.0509 (17) −0.0135 (15) −0.0063 (14) 0.0059 (15)
C10 0.0403 (17) 0.078 (2) 0.0545 (18) −0.0012 (17) −0.0152 (14) 0.0132 (17)
C11 0.0520 (18) 0.0482 (17) 0.0399 (16) 0.0053 (15) −0.0018 (14) 0.0093 (13)
C12 0.0416 (16) 0.0395 (15) 0.0289 (13) 0.0033 (12) 0.0036 (12) −0.0004 (11)
C13 0.0369 (15) 0.0509 (18) 0.0501 (17) 0.0036 (14) 0.0101 (13) −0.0013 (14)
C14 0.076 (2) 0.068 (2) 0.0355 (16) −0.0062 (18) −0.0027 (16) −0.0003 (15)
C15 0.066 (2) 0.0467 (18) 0.0465 (17) −0.0170 (16) −0.0032 (16) 0.0043 (14)
C16 0.102 (3) 0.0448 (19) 0.057 (2) −0.0143 (19) 0.012 (2) 0.0058 (15)
C17 0.103 (3) 0.051 (2) 0.060 (2) 0.008 (2) 0.005 (2) 0.0181 (17)
C18 0.167 (5) 0.063 (3) 0.125 (4) 0.036 (3) 0.021 (4) 0.027 (3)
C19 0.133 (4) 0.065 (2) 0.066 (2) −0.013 (3) 0.010 (3) 0.022 (2)
C20 0.178 (6) 0.118 (4) 0.089 (3) −0.063 (4) 0.041 (4) 0.004 (3)
C21 0.0268 (13) 0.0368 (15) 0.0363 (14) −0.0016 (11) −0.0019 (11) 0.0078 (12)
C22 0.0325 (14) 0.0433 (16) 0.0407 (15) 0.0019 (13) −0.0002 (12) 0.0056 (12)
C23 0.0424 (16) 0.0436 (17) 0.0413 (15) 0.0005 (14) 0.0107 (13) 0.0045 (12)
C24 0.0532 (18) 0.0572 (19) 0.0453 (17) −0.0051 (16) 0.0053 (15) −0.0095 (14)
C25 0.0435 (17) 0.062 (2) 0.0420 (17) −0.0046 (15) −0.0106 (15) −0.0011 (14)
C26 0.0284 (14) 0.0431 (16) 0.0418 (15) −0.0043 (12) −0.0025 (12) 0.0077 (12)
C27 0.096 (3) 0.088 (3) 0.0400 (18) 0.006 (2) −0.0099 (19) 0.0103 (18)
C28 0.062 (2) 0.094 (3) 0.084 (3) 0.003 (2) −0.029 (2) −0.026 (2)
C29 0.0309 (15) 0.0564 (19) 0.0633 (19) 0.0026 (13) −0.0155 (15) 0.0046 (16)
C30 0.0325 (15) 0.0507 (18) 0.071 (2) 0.0104 (13) 0.0004 (15) 0.0047 (15)
C31 0.0389 (15) 0.0390 (16) 0.0478 (16) 0.0028 (13) 0.0039 (13) 0.0008 (13)
C32 0.0338 (14) 0.0329 (14) 0.0402 (14) −0.0008 (12) −0.0008 (12) 0.0067 (12)
C33 0.0374 (16) 0.0485 (17) 0.0501 (17) −0.0068 (13) 0.0023 (13) 0.0112 (14)
C34 0.0558 (18) 0.0378 (16) 0.069 (2) 0.0038 (15) −0.0042 (16) 0.0059 (14)
C35 0.0494 (18) 0.0487 (17) 0.0452 (16) 0.0060 (14) −0.0115 (14) 0.0012 (13)
C36 0.078 (2) 0.064 (2) 0.0438 (18) 0.0015 (19) −0.0134 (16) −0.0016 (15)
C37 0.081 (2) 0.063 (2) 0.0471 (18) −0.002 (2) 0.0030 (18) −0.0111 (16)
C38 0.128 (4) 0.110 (3) 0.058 (2) 0.000 (3) 0.029 (2) −0.012 (2)
C39 0.110 (3) 0.070 (3) 0.073 (2) −0.001 (2) −0.013 (2) −0.023 (2)
C40 0.137 (4) 0.100 (4) 0.129 (4) −0.030 (3) −0.050 (4) −0.018 (3)

Geometric parameters (Å, º)

O1—C3 1.436 (3) C18—H18A 0.9600
O2—C11 1.447 (4) C19—H19 0.9300
O2—C17 1.440 (4) C20—H20A 0.9300
O1—H1O 0.80 (4) C20—H20B 0.9300
C1—C6 1.555 (3) C21—C26 1.562 (3)
C1—C12 1.564 (4) C21—C32 1.559 (3)
C1—C2 1.534 (4) C21—C22 1.532 (3)
C1—C13 1.546 (4) C21—C33 1.537 (4)
C2—C3 1.520 (4) C22—C23 1.515 (4)
C3—C4 1.511 (4) C23—C24 1.520 (4)
O3—C23 1.437 (3) C24—C25 1.525 (4)
C4—C5 1.533 (4) C25—C27 1.538 (4)
O4—C37 1.443 (4) C25—C28 1.541 (5)
O4—C31 1.455 (3) C25—C26 1.551 (4)
C5—C7 1.541 (5) C26—C29 1.526 (4)
C5—C6 1.549 (4) C29—C30 1.527 (4)
C5—C8 1.534 (4) C30—C31 1.522 (4)
C6—C9 1.529 (4) C31—C32 1.532 (4)
C9—C10 1.524 (4) C31—C34 1.532 (4)
C10—C11 1.520 (4) C32—C35 1.528 (4)
C11—C12 1.540 (4) C35—C36 1.519 (4)
C11—C14 1.530 (4) C36—C37 1.528 (5)
C12—C15 1.522 (4) C37—C39 1.505 (5)
C15—C16 1.513 (4) C37—C38 1.518 (5)
C16—C17 1.530 (5) C39—C40 1.305 (7)
C17—C19 1.511 (6) C22—H22A 0.9700
C17—C18 1.532 (6) C22—H22B 0.9700
C19—C20 1.293 (8) C23—H23 0.9800
C2—H2A 0.9700 C24—H24A 0.9700
C2—H2B 0.9700 C24—H24B 0.9700
O3—H3O 0.81 (4) C26—H26 0.9800
C3—H3 0.9800 C27—H27A 0.9600
C4—H4B 0.9700 C27—H27B 0.9600
C4—H4A 0.9700 C27—H27C 0.9600
C6—H6 0.9800 C28—H28A 0.9600
C7—H7B 0.9600 C28—H28B 0.9600
C7—H7A 0.9600 C28—H28C 0.9600
C7—H7C 0.9600 C29—H29A 0.9700
C8—H8B 0.9600 C29—H29B 0.9700
C8—H8A 0.9600 C30—H30A 0.9700
C8—H8C 0.9600 C30—H30B 0.9700
C9—H9B 0.9700 C32—H32 0.9800
C9—H9A 0.9700 C33—H33A 0.9600
C10—H10B 0.9700 C33—H33B 0.9600
C10—H10A 0.9700 C33—H33C 0.9600
C12—H12 0.9800 C34—H34A 0.9600
C13—H13C 0.9600 C34—H34B 0.9600
C13—H13A 0.9600 C34—H34C 0.9600
C13—H13B 0.9600 C35—H35A 0.9700
C14—H14C 0.9600 C35—H35B 0.9700
C14—H14A 0.9600 C36—H36A 0.9700
C14—H14B 0.9600 C36—H36B 0.9700
C15—H15A 0.9700 C38—H38A 0.9600
C15—H15B 0.9700 C38—H38B 0.9600
C16—H16A 0.9700 C38—H38C 0.9600
C16—H16B 0.9700 C39—H39 0.9300
C18—H18C 0.9600 C40—H40A 0.9300
C18—H18B 0.9600 C40—H40B 0.9300
C11—O2—C17 119.5 (2) H20A—C20—H20B 120.00
C3—O1—H1O 110 (3) C19—C20—H20A 120.00
C2—C1—C6 107.9 (2) C22—C21—C26 107.7 (2)
C2—C1—C12 108.0 (2) C22—C21—C32 108.10 (19)
C6—C1—C12 106.05 (19) C26—C21—C32 105.98 (19)
C6—C1—C13 114.7 (2) C26—C21—C33 114.4 (2)
C12—C1—C13 111.6 (2) C32—C21—C33 111.7 (2)
C2—C1—C13 108.3 (2) C22—C21—C33 108.8 (2)
C1—C2—C3 114.6 (2) C21—C22—C23 114.9 (2)
O1—C3—C2 110.0 (2) O3—C23—C22 109.8 (2)
O1—C3—C4 111.5 (2) O3—C23—C24 111.2 (2)
C2—C3—C4 111.4 (2) C22—C23—C24 111.9 (2)
C3—C4—C5 114.8 (2) C23—C24—C25 114.9 (2)
C31—O4—C37 119.1 (2) C24—C25—C27 110.9 (2)
C4—C5—C7 106.7 (2) C24—C25—C28 106.9 (3)
C4—C5—C8 110.7 (2) C26—C25—C27 114.7 (2)
C6—C5—C8 114.9 (2) C26—C25—C28 108.9 (2)
C7—C5—C8 107.5 (2) C27—C25—C28 107.3 (3)
C4—C5—C6 107.9 (2) C24—C25—C26 107.9 (2)
C6—C5—C7 108.8 (2) C21—C26—C25 116.3 (2)
C1—C6—C5 116.4 (2) C25—C26—C29 115.4 (2)
C5—C6—C9 115.3 (2) C21—C26—C29 111.2 (2)
C1—C6—C9 111.3 (2) C26—C29—C30 110.6 (2)
C6—C9—C10 110.8 (2) C29—C30—C31 112.2 (2)
C9—C10—C11 112.6 (2) O4—C31—C32 107.8 (2)
O2—C11—C12 108.1 (2) O4—C31—C34 109.6 (2)
O2—C11—C14 109.3 (2) O4—C31—C30 103.9 (2)
C10—C11—C14 109.5 (2) C30—C31—C34 109.0 (2)
C12—C11—C14 116.4 (2) C32—C31—C34 116.8 (2)
O2—C11—C10 103.9 (2) C30—C31—C32 109.2 (2)
C10—C11—C12 108.9 (2) C21—C32—C31 116.2 (2)
C1—C12—C11 115.6 (2) C21—C32—C35 116.4 (2)
C1—C12—C15 117.3 (2) C31—C32—C35 109.7 (2)
C11—C12—C15 109.5 (2) C32—C35—C36 108.5 (2)
C12—C15—C16 108.8 (3) C35—C36—C37 113.8 (3)
C15—C16—C17 113.2 (3) O4—C37—C38 103.8 (3)
O2—C17—C19 110.7 (3) O4—C37—C39 110.1 (3)
C16—C17—C18 110.5 (3) C36—C37—C38 110.2 (3)
O2—C17—C18 103.5 (3) C36—C37—C39 114.1 (3)
C18—C17—C19 107.4 (3) C38—C37—C39 107.4 (3)
C16—C17—C19 113.6 (4) O4—C37—C36 110.5 (2)
O2—C17—C16 110.7 (3) C37—C39—C40 128.2 (4)
C17—C19—C20 128.0 (4) C21—C22—H22A 109.00
C1—C2—H2A 109.00 C21—C22—H22B 109.00
C3—C2—H2A 109.00 C23—C22—H22A 108.00
C3—C2—H2B 109.00 C23—C22—H22B 108.00
C1—C2—H2B 108.00 H22A—C22—H22B 108.00
H2A—C2—H2B 108.00 O3—C23—H23 108.00
C2—C3—H3 108.00 C22—C23—H23 108.00
C4—C3—H3 108.00 C24—C23—H23 108.00
O1—C3—H3 108.00 C23—C24—H24A 109.00
C23—O3—H3O 108 (3) C23—C24—H24B 109.00
C3—C4—H4B 109.00 C25—C24—H24A 109.00
C5—C4—H4A 109.00 C25—C24—H24B 109.00
H4A—C4—H4B 108.00 H24A—C24—H24B 108.00
C5—C4—H4B 109.00 C21—C26—H26 104.00
C3—C4—H4A 109.00 C25—C26—H26 104.00
C9—C6—H6 104.00 C29—C26—H26 104.00
C1—C6—H6 104.00 C25—C27—H27A 109.00
C5—C6—H6 104.00 C25—C27—H27B 109.00
C5—C7—H7B 109.00 C25—C27—H27C 109.00
C5—C7—H7A 109.00 H27A—C27—H27B 109.00
H7A—C7—H7C 109.00 H27A—C27—H27C 110.00
C5—C7—H7C 109.00 H27B—C27—H27C 110.00
H7A—C7—H7B 109.00 C25—C28—H28A 110.00
H7B—C7—H7C 110.00 C25—C28—H28B 109.00
C5—C8—H8B 109.00 C25—C28—H28C 109.00
C5—C8—H8C 109.00 H28A—C28—H28B 109.00
H8A—C8—H8C 109.00 H28A—C28—H28C 110.00
H8B—C8—H8C 110.00 H28B—C28—H28C 109.00
H8A—C8—H8B 109.00 C26—C29—H29A 110.00
C5—C8—H8A 109.00 C26—C29—H29B 110.00
C6—C9—H9B 109.00 C30—C29—H29A 110.00
C10—C9—H9B 109.00 C30—C29—H29B 110.00
H9A—C9—H9B 108.00 H29A—C29—H29B 108.00
C6—C9—H9A 110.00 C29—C30—H30A 109.00
C10—C9—H9A 109.00 C29—C30—H30B 109.00
C11—C10—H10A 109.00 C31—C30—H30A 109.00
C9—C10—H10A 109.00 C31—C30—H30B 109.00
C9—C10—H10B 109.00 H30A—C30—H30B 108.00
H10A—C10—H10B 108.00 C21—C32—H32 104.00
C11—C10—H10B 109.00 C31—C32—H32 104.00
C11—C12—H12 104.00 C35—C32—H32 104.00
C1—C12—H12 104.00 C21—C33—H33A 109.00
C15—C12—H12 104.00 C21—C33—H33B 110.00
C1—C13—H13A 109.00 C21—C33—H33C 109.00
H13A—C13—H13B 109.00 H33A—C33—H33B 109.00
C1—C13—H13B 110.00 H33A—C33—H33C 110.00
H13B—C13—H13C 110.00 H33B—C33—H33C 109.00
C1—C13—H13C 109.00 C31—C34—H34A 110.00
H13A—C13—H13C 109.00 C31—C34—H34B 109.00
C11—C14—H14B 110.00 C31—C34—H34C 109.00
C11—C14—H14A 109.00 H34A—C34—H34B 109.00
H14A—C14—H14C 109.00 H34A—C34—H34C 109.00
C11—C14—H14C 110.00 H34B—C34—H34C 110.00
H14A—C14—H14B 109.00 C32—C35—H35A 110.00
H14B—C14—H14C 109.00 C32—C35—H35B 110.00
C12—C15—H15B 110.00 C36—C35—H35A 110.00
C16—C15—H15A 110.00 C36—C35—H35B 110.00
H15A—C15—H15B 108.00 H35A—C35—H35B 108.00
C16—C15—H15B 110.00 C35—C36—H36A 109.00
C12—C15—H15A 110.00 C35—C36—H36B 109.00
C15—C16—H16A 109.00 C37—C36—H36A 109.00
C17—C16—H16A 109.00 C37—C36—H36B 109.00
C17—C16—H16B 109.00 H36A—C36—H36B 108.00
H16A—C16—H16B 108.00 C37—C38—H38A 110.00
C15—C16—H16B 109.00 C37—C38—H38B 109.00
C17—C18—H18C 109.00 C37—C38—H38C 109.00
C17—C18—H18A 109.00 H38A—C38—H38B 109.00
C17—C18—H18B 109.00 H38A—C38—H38C 109.00
H18B—C18—H18C 109.00 H38B—C38—H38C 110.00
H18A—C18—H18B 110.00 C37—C39—H39 116.00
H18A—C18—H18C 110.00 C40—C39—H39 116.00
C20—C19—H19 116.00 C39—C40—H40A 120.00
C17—C19—H19 116.00 C39—C40—H40B 120.00
C19—C20—H20B 120.00 H40A—C40—H40B 120.00
C17—O2—C11—C10 −169.9 (2) C15—C16—C17—C19 78.7 (4)
C17—O2—C11—C12 −54.3 (3) C15—C16—C17—C18 −160.6 (3)
C17—O2—C11—C14 73.2 (3) C15—C16—C17—O2 −46.6 (4)
C11—O2—C17—C19 −78.7 (4) C18—C17—C19—C20 −102.8 (5)
C11—O2—C17—C16 48.2 (4) O2—C17—C19—C20 145.0 (4)
C11—O2—C17—C18 166.6 (3) C16—C17—C19—C20 19.7 (5)
C12—C1—C2—C3 −165.9 (2) C32—C21—C22—C23 −165.4 (2)
C13—C1—C6—C5 −68.4 (3) C33—C21—C26—C25 −68.0 (3)
C13—C1—C2—C3 73.1 (3) C33—C21—C22—C23 73.2 (3)
C6—C1—C2—C3 −51.7 (3) C26—C21—C22—C23 −51.3 (3)
C2—C1—C12—C15 −57.2 (3) C22—C21—C32—C35 −58.3 (3)
C13—C1—C6—C9 66.6 (3) C33—C21—C26—C29 66.8 (3)
C2—C1—C12—C11 171.2 (2) C22—C21—C32—C31 170.2 (2)
C12—C1—C6—C9 −57.1 (3) C32—C21—C26—C29 −56.7 (3)
C13—C1—C12—C15 61.8 (3) C33—C21—C32—C35 61.3 (3)
C6—C1—C12—C11 55.8 (3) C26—C21—C32—C31 55.0 (3)
C6—C1—C12—C15 −172.6 (2) C26—C21—C32—C35 −173.5 (2)
C13—C1—C12—C11 −69.8 (3) C33—C21—C32—C31 −70.2 (3)
C12—C1—C6—C5 168.0 (2) C32—C21—C26—C25 168.5 (2)
C2—C1—C6—C9 −172.6 (2) C22—C21—C26—C29 −172.2 (2)
C2—C1—C6—C5 52.5 (3) C22—C21—C26—C25 53.0 (3)
C1—C2—C3—C4 53.9 (3) C21—C22—C23—C24 52.8 (3)
C1—C2—C3—O1 178.0 (2) C21—C22—C23—O3 176.9 (2)
O1—C3—C4—C5 −177.3 (2) O3—C23—C24—C25 −176.2 (2)
C2—C3—C4—C5 −54.1 (3) C22—C23—C24—C25 −53.0 (3)
C3—C4—C5—C8 −74.5 (3) C23—C24—C25—C28 168.7 (3)
C3—C4—C5—C7 168.9 (2) C23—C24—C25—C27 −74.6 (3)
C3—C4—C5—C6 52.1 (3) C23—C24—C25—C26 51.8 (3)
C37—O4—C31—C32 −55.5 (3) C27—C25—C26—C21 70.9 (3)
C37—O4—C31—C30 −171.2 (2) C27—C25—C26—C29 −62.1 (3)
C37—O4—C31—C34 72.5 (3) C24—C25—C26—C29 173.8 (2)
C31—O4—C37—C38 166.7 (3) C28—C25—C26—C29 58.2 (3)
C31—O4—C37—C39 −78.5 (3) C28—C25—C26—C21 −168.9 (3)
C31—O4—C37—C36 48.5 (3) C24—C25—C26—C21 −53.3 (3)
C7—C5—C6—C1 −167.9 (2) C25—C26—C29—C30 −164.0 (2)
C7—C5—C6—C9 58.9 (3) C21—C26—C29—C30 60.8 (3)
C4—C5—C6—C9 174.3 (2) C26—C29—C30—C31 −58.3 (3)
C8—C5—C6—C1 71.5 (3) C29—C30—C31—C32 53.0 (3)
C8—C5—C6—C9 −61.6 (3) C29—C30—C31—C34 −75.5 (3)
C4—C5—C6—C1 −52.5 (3) C29—C30—C31—O4 167.8 (2)
C5—C6—C9—C10 −164.3 (2) O4—C31—C32—C35 59.4 (3)
C1—C6—C9—C10 60.3 (3) C34—C31—C32—C21 70.2 (3)
C6—C9—C10—C11 −57.8 (3) C30—C31—C32—C21 −53.9 (3)
C9—C10—C11—C14 −75.3 (3) C30—C31—C32—C35 171.6 (2)
C9—C10—C11—C12 53.1 (3) O4—C31—C32—C21 −166.0 (2)
C9—C10—C11—O2 168.1 (2) C34—C31—C32—C35 −64.4 (3)
C10—C11—C12—C1 −54.3 (3) C31—C32—C35—C36 −60.3 (3)
C10—C11—C12—C15 170.6 (2) C21—C32—C35—C36 165.2 (2)
O2—C11—C12—C15 58.3 (3) C32—C35—C36—C37 53.9 (3)
C14—C11—C12—C15 −65.0 (3) C35—C36—C37—O4 −46.2 (4)
C14—C11—C12—C1 70.1 (3) C35—C36—C37—C38 −160.4 (3)
O2—C11—C12—C1 −166.5 (2) C35—C36—C37—C39 78.6 (3)
C11—C12—C15—C16 −60.5 (3) O4—C37—C39—C40 142.0 (4)
C1—C12—C15—C16 165.3 (2) C36—C37—C39—C40 17.0 (6)
C12—C15—C16—C17 54.8 (4) C38—C37—C39—C40 −105.6 (5)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O1—H1O···O3 0.80 (4) 1.99 (4) 2.784 (3) 170 (4)
O3—H3O···O1i 0.81 (4) 2.00 (4) 2.804 (3) 169 (4)

Symmetry code: (i) x+1/2, −y+3/2, −z+1.

References

  1. Barberan, F. A. T., Nuñez, J. M. & Tomas, F. (1985). Phytochemistry, 24, 1285–1288.
  2. Bruker (2007). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Duman, H. (2000). Sideritis L, in Flora of Turkey and East Aegean Islands (Supplement 2), Vol. 11, pp. 201–205. Edinburgh: University Press.
  4. Evans, G. B. & Gainsford, G. J. (2011). Acta Cryst. E67, o2870. [DOI] [PMC free article] [PubMed]
  5. Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
  6. Flack, H. D. (1983). Acta Cryst. A39, 876–881.
  7. Fraga, B. M., Reina, M., Luis, J. G. & Rodriguez, M. L. (2003). Z. Naturforsch. Teil C, 58, 621–625. [DOI] [PubMed]
  8. González-Burgos, E., Carretero, M. E. & Gómez-Serranillos, M. P. (2011). J. Ethnopharmacol. 135, 209–225. [DOI] [PubMed]
  9. Sheldrick, G. M. (2003). SADABS. University of Göttingen, Germany.
  10. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  11. Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8.
  12. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  13. Stewart, J. J. P. (1985). MOPAC. QCPE Program 445. Quantum Chemistry Program Exchange, Indiana University, Bloomington, IN 47405, USA.
  14. Topçu, G., Gören, A. C., Kıliç, T., Kemal Yıldız, Y. & Tümen, G. (2002). Nat. Prod. Lett. 16, 33–37. [DOI] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989016013864/bg2593sup1.cif

e-72-01380-sup1.cif (1.1MB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016013864/bg2593Isup2.hkl

e-72-01380-Isup2.hkl (750KB, hkl)

Supporting information file. DOI: 10.1107/S2056989016013864/bg2593sup3.pdf

e-72-01380-sup3.pdf (103.9KB, pdf)

Supporting information file. DOI: 10.1107/S2056989016013864/bg2593sup4.tif

Supporting information file. DOI: 10.1107/S2056989016013864/bg2593Isup5.cml

CCDC reference: 1501445

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

RESOURCES