Distal arthrogryposis with variable clinical expression caused by TNNI2 mutation

Abstract

Distal arthrogryposis (DA) is a clinically and genetically heterogeneous disorder with multiple joint contractures. We describe a female DA patient with hand and foot deformities, and right-sided torticollis. Using exome sequencing, we identified a novel TNNI2 mutation (c.485>A, p.Arg162Lys) in the patient and her father. The father has no typical DA but hip dysplasia. This may explain the clinical features of DA2B in this family, but with variable clinical expression.

Distal arthrogryposis (DA) is a clinically and genetically heterogeneous disorder characterized by congenital limb contractures with no primary neurological or muscular effects. DA is an autosomal dominant disorder with reduced penetrance and variable expression. DA is classified into 10 types, 1, 2A, 2B, 3–5, 7–10,¹ and molecular diagnosis can help with the correct diagnosis of DA. DA2B (OMIM 601680) is one of the most common types.² In DA2B, mutations have been found in genes encoding troponin I, fast skeletal type (TNNI2),³ troponin T3, fast skeletal type (TNNT3),⁴ myosin heavy chain 3, skeletal muscle, embryonic (MYH3)⁵ and tropomyosin 2 (TPM2).⁵ In this study, we describe the detailed clinical features and molecular diagnosis of a female DA patient.

The female patient was 3 years old and born after 40 weeks of gestation to non-consanguineous Croatian parents (Figure 1a). Apgar scores were 8/7 at 1/5 min and her birth weight was 3450 g (50th percentile) and she was 48 cm long (25th percentile). At birth, short neck, low posterior hairline, nevus flammeus on the forehead and asymmetric epicanthus were seen. Bilateral joint contractures were also observed at the wrists, elbows, hips and knees, together with right-sided torticollis. In addition, hand and foot deformities (talipes equinovarus) and skin-furrowed fingers were reported (Table 1). Serum amino acid and organic acid levels, peripheral blood lymphocyte karyotypes and electroencephalogram were all normal. During the first few months, the patient showed motor delay, bilateral hypertonia and vertical talus (Figure 1b, c). Her motor movements were slow, and closed fists and bilateral unabducted thumbs were observed (Figure 1d, e). Her head was tilted to the left and rotated to the right. The patient also presented with hypertonic upper limbs and a palmar grasp. In addition, she was unstable when standing on tiptoes. Physiological reflexes were present. Physical therapy was started immediately for neurodevelopmental delay and right-sided torticollis. Poor muscle tone, hypertonus of the upper limbs, and palmar grasp were consistently observed. Conservative orthopedic correction using the Dobbs method (high gypsum boots, replaced every 7 days) was started. At 4 months, the talus was surgically repositioned and the navicular bone was fixed with Kirschner wire. The patient wore orthoses for her ankles and feet during the day, but only at night on the hands and wrists. Physical therapy is currently ongoing.

Figure 1.

(a) Pedigree tree and segregation status of TNNI2 mutation (c.485G>A, p.Arg162Lys). WT: wild type, Mut: mutant (b–e) The female patient showing vertical talus (b, c) and overlapping fingers (d, e). Electropherograms around the mutation of the patient and her parents (f). The father had hip dysplasia (g). TNNI2 mutations were mapped to the protein (h). Functional domains are colored differently (ID: inhibitory region, SR: switch region). The current (red) and reported (black) mutations were clustered in the actin-binding domain (h). Schematic representation of the troponin complex with an actin polymer in low Ca²⁺ concentrations, modified from Murakami et al. (i).¹³ The Ca²⁺-binding (TnC) and tropomyosin-binding (TnT) subunits are depicted as a yellow dumbbell shape and a magenta tube, respectively. The domain organization of the inhibitory subunit (TnI)¹⁴ is indicated; the IT-arm, which comprises two helices connected by a flexible linker, the inhibitory region, the switch region and the C-terminal actin-binding domain, is shown as cyan tube-like shapes connected with a cyan string, a dark-blue string, a pink rectangle and string, and a green oval, respectively. Actin monomers are presented as colored rounded rectangles. The mutation position of human TnI was mapped in a solution of the actin-binding domain of chicken TnI in a Ca²⁺-free state (PDB code 1VDI).¹³ The mutation site is colored red. The side chains of the residue at the mutation site (Arg161 in chicken) and its surrounding residues are shown as van der Waals spheres. The amino acid number of chicken TnI is shown with that of human TnI in parentheses. N and C denote the N- and C-terminus of the protein.

Table 1. Clinical features of the patient and her father.

Physical features	Proband	Father
Face
Triangular face	+	+
Naevus flameus on forehead	+	−
Long philtrum	+	+
Small prominent chin	+	−
Small mandible	+	+
Micrognathia	+	−
Attached ear lobules	+	−
Downslanting palpebral fissures	−	−
Prominent nasolabial folds	+	+
Broad nasal bridge	−	−
Broad nasal root	+	−
Small mouth	+	+
High-arched palate	+	−
Neck
Short neck	+	−
Mild neck webbing	+	−
Skeletal
Short stature	+	−
Joint contractures	+	−
Precocious arthrosis	−	+
Scoliosis	−	−
Ulnar (wrist) deviation	+	−
Severe camptodactyly	+	−
Hands
Overriding fingers	+	−
Thumb adduction	+	−
Contractures of the proximal interphalangeal (PIP) joints	+	−
Contractures of the metacarpophalangeal joints	+	−
Hypoplastic or absent interphalangeal creases	+	−
Feet
Talipes equinovarus	+	−
Calcaneovalgus deformities	+	−
Vertical talus	+	−
Metatarsus varus	−	−
Clubfoot	+	−

Whole-exome sequencing (WES) was performed as previously described⁶ and 93.7% of RefSeq coding regions were covered by 20 or more reads. WES identified a novel TNNI2 mutation (NM_003282, c.485G>A, p.Arg162Lys) in the patient and her father (Figure 1a, f). The altered amino residue is evolutionally conserved from Xenopus tropicalis to Homo sapiens. This missense mutation was predicted to be pathogenic by three prediction software: SIFT: damaging (score=0), PolyPhen-2: possibly damaging (score=0.956) and MutationTaster: disease causing. This variant has not been reported in the available public databases including ExAC browser (http://exac.broadinstitute.org/), Exome Variant Server (http://evs.gs.washington.edu/EVS/) or 1000 Genomes (http://browser.1000genomes.org/index.html) (all accessed on July 29, 2016). Sanger sequencing revealed that this mutation occurred de novo in the proband’s father (Figure 1a). The father did not have the clinical symptoms of DA, but he did have hip dysplasia in infancy, which was surgically repaired (Figure 1g). A total of 10 TNNI2 mutations have been reported.^2,3,5,7–10 All TNNI2 mutations, including the mutation reported here, occur in a small region (156–178 amino acids (aa)) of the TNNI2 actin-binding domain (182 aa in length) (Figure 1h). Therefore, this small region probably has an important role in TNNI2 function.

The troponin complex consists of a Ca²⁺-binding subunit (TnC), a tropomyosin-binding subunit (TnT) and an inhibitory subunit (TnI) (Figure 1i). Mutations are specific to the TnI subunit and exclusively affect the fast skeletal muscle. Low Ca²⁺ concentrations stabilize the inhibitory conformation of the troponin-tropomyosin complex, which inhibits actomyosin interactions, leading to relaxation of the skeletal muscle.¹¹ The C-terminal actin-binding domain of TnI is required for Ca²⁺-dependent inhibition¹² (Figure 1i).

We mapped the position of the human TnI mutation using the actin-binding domain of chicken TnI in a Ca²⁺-free state (PDB code 1VDI).¹³ The mutation occurred in a conserved arginine residue (Arg162 in human and Arg161 in chicken) located within the actin-binding domain of TnI. As shown in Figure 1i, a methylene group of the arginine is a component of the hydrophobic core and this can be replaced by the methylene group of the mutated lysine residue (p.Arg162Lys). Therefore, this mutation does not affect the protein structure, but could impair the molecular interactions between TnI and actin filaments.

In conclusion, we describe a novel TNNI2 mutation in two family members: a young girl with DA2B and her father with hip dysplasia (but not typical DA). This mutation may explain the variable clinical expression of DA2B in this family.