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Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America logoLink to Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America
. 2016 Aug 23;63(10):1332–1339. doi: 10.1093/cid/ciw573

Individualized Approaches Are Needed for Optimized Blood Cultures

Ritu Banerjee 1, Volkan Özenci 2, Robin Patel 3,4
PMCID: PMC5091349  PMID: 27558570

Laboratories should individually optimize procedures for blood culture (BC) collection, processing, analysis, and result reporting. Implementation of rapid BC diagnostics should be done with clinical decision support systems that maximize clinical benefits.

Keywords: blood culture, bacteremia

Abstract

Many strategies and technologies are available to improve blood culture (BC)–based diagnostics. The ideal approach to BCs varies between healthcare institutions. Institutions need to examine clinical needs and practices in order to optimize BC-based diagnostics for their site. Before laboratories consider offering rapid matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF MS) or expensive rapid panel-based molecular BC diagnostics, they should optimize preanalytical, analytical, and postanalytical processes and procedures surrounding BC systems. Several factors need to be considered, including local resistance rates, antibiotic prescribing patterns, patient- and provider-types, laboratory staffing, and personnel available to liaise with clinicians to optimize antibiotic use. While there is much excitement surrounding new high-technology diagnostics, cost-neutral benefits can be realized by optimizing existing strategies and using available tools in creative ways. Rapid BC diagnostics should be implemented in a manner that optimizes impact. Strategies to optimize these BC diagnostics in individual laboratories are presented here.


Automated continuous monitoring blood culture (BC) systems introduced in the last century, such as those from Becton, Dickinson and Company (New Jersey), bioMérieux (France), and Trek Diagnostic Systems (Ohio), have revolutionized BC diagnostics. Recently, new strategies and technologies have evolved for further improving BC-based diagnostics. The ideal approach, given the numerous available schemes, will vary between healthcare institutions; there is no universal strategy. It is challenging for laboratories to choose among numerous rapid BC diagnostics, including rapid panel-based diagnostics, that are currently available. In our opinion, attention should be devoted to optimizing processes and procedures to ensure quality BC practices prior to adopting new rapid BC-based diagnostics. BC approaches need to be individualized based on local resistance rates, antibiotic usage patterns, patient types, provider make-up, laboratory setups and routines, stewardship practices, and personnel available to liaise with clinicians to optimize antibiotic use and clinical outcomes. Although there is much excitement surrounding high-technology diagnostics, cost-neutral benefits may be realized by optimizing existing strategies using available tools. Several areas related to BC-based diagnostics are in need of clarification through future research.

Two tenets underscore BC-based diagnostics. The first is that early, effective treatment of bloodstream infection is ideal [1]. The second is that unnecessary antibiotic use (eg, treatment of contaminants or use of excessively broad-spectrum agents) results in excess cost [2] and/or potentially adverse outcomes, including toxicity, Clostridium difficile infection, and selection of resistance. Achieving these goals requires optimal BC use (Table 1). BCs should be performed on the right patient at the right time, ideally prior to administration of antibiotics. Many BCs are collected on patients who have received antibiotics [3]. It goes without saying that the sooner a BC is collected, the sooner positive results will be available. An adequate volume of blood needs to be collected. Ideally (for adults), that would be at least 40 mL divided into 2 sets [4], each via separate peripheral venipuncture (unless diagnosing catheter-associated bloodstream infection, in which case 1 peripheral and 1 catheter draw should be considered). Each set should include at least an aerobic and anaerobic bottle [5]. We have shown that collection of 2 aerobic and 1 anaerobic BC bottles per set (ie, 30 mL per set) results in improved yield compared with 2 bottles per set [5]. Single-set BCs should typically be avoided because they are insensitive and, if positive, do not allow contamination assessment, which may lead to downstream negative patient outcomes. In patients with positive BCs, follow-up BCs should only be performed as clinically indicated.

Table 1.

Pre- and Post-Analytical Areas for Optimization of Blood Cultures and Their Impact

Category Steps to be Optimized Impact
BC collection Collection of BCs prior to administration of antimicrobial agents and from patients for whom BCs are appropriate Improves BC yield
Adequate blood volume per bottle Improves BC yield
Sufficient number of draws (2 or more from separate venipuncture sites); avoid single-draw BCs Improves BC yield; allows discrimination of contamination
Sufficient number of bottles (at least 1 aerobic and 1 anaerobic bottle) with each draw Improves BC yield
Transportation Efficient transportation of BC bottles to the laboratory Reduces time to positivity
Processing Timely placement of BC bottles onto BC instrument Reduces time to positivity
Prompt removal of positive BC bottles from the instrument and immediate workup of those bottles Reduces time to organism identification
Reporting Prompt communication of positive results to clinicians Reduces time to optimal therapy
Linking results to treatment guidance Use of templated comments within BC result report (eg, NDM detected by polymerase chain reaction. This organism is resistant to carbapenems and other β-lactam antibiotics. Patient requires contact precautions if hospitalized. Consult infectious diseases.) Reduces time to optimal therapy
Antimicrobial stewardship team notification for provision of treatment recommendations or direct microbiologist oversight of positive BCs with provision of treatment recommendations to clinical team by MD microbiologist Reduces time to optimal therapy
Use of electronic decision-support systems Reduces time to optimal therapy

Abbreviations: BC, blood culture; NDM, New Delhi metallo-β-lactamase.

Clinical and Laboratory Standards Institute guidelines state that BC bottles should be sent to the laboratory within 2 hours of collection [4]; in our opinion, they should be placed onto BC instruments within this timeframe. A solution for laboratories that receive bottles from several hospitals is to place satellite, small- to medium-sized BC systems in respective hospitals. Quality improvement projects surrounding BC processes, from collection to reporting, can identify areas for improvement to enable more rapid reporting of positive BCs [6]. Using such an approach, quality improvement teams follow trajectories of BC bottles, from collection through transportation to the laboratory, from arrival in the laboratory through placement onto BC instruments, and finally, from removal from instruments, when positive, to reporting of positive results; a journey that involves multiple hand-offs and different personnel types (Table 1) [6]. By examining these processes and finding opportunities for improvement, the time between BC collection and results reporting can be decreased (by almost 3 hours, in our study). Such interventions are cost neutral, with effects maintained as the process changes that are executed become routine practice [6]. Of course, collection of BCs at off-site locations and timing of such collections as well as numbers of transports per day from off-site locations to centralized laboratories affect time from BC collection to placement of bottles onto instruments, as do laboratory work hours [7]. If trained microbiology laboratory staff is unavailable, systems that enable BCs to be loaded onto instruments, including use of nonmicrobiology staff or robotic loading, such as that available with the BacT/ALERT VIRTUO BC system (bioMérieux), may be helpful. Although these issues seem mundane, failure to optimize them can negatively impact conventional and new BC diagnostics and should be addressed as part of routine quality systems.

There may be differences in time to detection of positivity and organism detection rates with different BC bottle types and instruments. We showed that for anaerobic bacteria, BACTEC Lytic (Becton, Dickinson and Company) bottles had shorter detection times and better detection rates compared with BACTEC-Plus (Becton, Dickinson and Company) and BacT/ALERT-FN and -FN Plus (bioMérieux) bottles [8]. Similarly, we showed that in the presence of antifungals, the number of bottles positive for Candida species was higher using BacT/Alert FA compared with BACTEC Mycosis IC/F bottles (Becton, Dickinson and Company) [9]. Recently, we demonstrated that overall time to detection was approximately 20% shorter for bottles incubated on the BacT/ALERT VIRTUO BC system compared with the BacT/ALERT 3D system, although overall detection rates did not differ [10]. Future enhancements in BC bottle media and positivity detection mechanisms are likely to yield improvements. Current systems are based on detection of carbon dioxide production; by the time bottles flag positive, there is a relatively high concentration of organisms present. Given this, time to positivity can likely be decreased by detection of growth ahead of when bottles signal positive today. That this is possible is evidenced by a study we performed showing that the FilmArray Blood Culture Identification (BCID) Panel (BioFire Diagnostics, LLC) can detect bacteria in BC bottles before they signal positive [11]. Since it would be logistically challenging to interrogate bottles before they signal positive and would potentially risk the introduction of contaminants and since most bottles are negative, new systems that allow earlier “in-bottle” detection should be a priority for development. Such novel approaches may detect organisms ahead of Gram stain positivity.

Once bottles signal positive on a BC instrument, they must be removed from the instrument, worked up, and results reported (Figure 1); faster results will impact patient care. The College of American pathologists requires twice daily examination of bottles during the first 48 hours of incubation and daily monitoring thereafter. This may seem insufficient but is affected by hours that staff is in the laboratory. Some laboratories remove and work up positive BC bottles in real time (ie, as they become positive), others do so at regular intervals (eg, hourly), and yet others vary practices depending on times of the day. There may be no removal of positive BC bottles at night or on weekends. Laboratories should examine strategies to optimize workflow in order to decrease turnaround time to reporting positive BCs. If this is done, systems need to be in place to handle associated results. We have shown that frequent, scheduled monitoring of BC instruments decreases turnaround time to reporting positive BCs [6]. Work-up of new positive bottles should be prioritized, and perhaps, accrediting agencies should revisit requirements for frequency of monitoring of BC instruments. In addition, staffing limitations present an opportunity to develop new technologies that automatically detect and report results of positive BC bottles.

Figure 1.

Figure 1.

Overview of the process of blood collection for culture, inoculation of blood into blood culture (BC) bottles, loading of bottles onto a BC instrument, removal of positive bottles from the instrument when the bottle signals positive, and work-up of positive bottles with Gram stain, subculture for identification and antimicrobial susceptibility testing, and rapid BC-based diagnostic testing. Rapid methods are highlighted with red arrows and background toward the bottom of the figure. Underlined text indicates clinical reporting opportunities.

Once a positive BC bottle is removed from the instrument, the contents are gram stained and the clinician notified of results. Historically, further information would not be forthcoming until a day or more later because the bottle would be subcultured with growth worked up for identification and antimicrobial susceptibility testing (Figure 1). Today, instead of just receiving a Gram stain morphology report when a BC bottle signals positive and having to wait a day or more for identification of the organism(s) involved, microbial identification and detection of selected antibacterial resistance genes can be reported in a 1- to 4-hour time frame (Figure 1). However, not all such new approaches are cleared by the US Food and Drug Administration (FDA).

Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-ToF MS) is available in many clinical microbiology laboratories and is FDA cleared for microorganism identification from colonies on plates (Figure 1). Although BC bottles may be tested “directly” using MALDI-ToF MS (Figure 1), this strategy is not FDA cleared. Also, because the bottles contain macromolecules from blood and growth media, testing requires preparatory processing that involves the use of differential centrifugation and washings, selective lysis of blood cells, serum separator tubes, or filtration. Commercial processing is available using the Sepsityper (Bruker Daltonics, Germany). Although results are valid when obtained, yield is generally not as good from BC bottles compared with direct colony testing, with more gram-negative than gram-positive organisms typically identified [12]. In addition, not all organisms present in polymicrobial infections will be detected. MALDI-ToF MS performed directly on positive BC bottles is rapid (approximately 30–45 minutes) but, due to required processing steps, is not as fast as conventional direct colony testing. Furthermore, such testing is typically batched, impacting turnaround time. For this reason and because it involves less work for the laboratory, the strategy of subculture to solid media with testing of early growth after a short period of incubation (ie, before distinct colony formation) is becoming popular (Figure 1), although again, not FDA cleared. A current limitation of MALDI-ToF MS is that it does not provide antimicrobial susceptibility data. To overcome this, many laboratories are using or exploring strategies to more rapidly provide phenotypic susceptibility testing through the use of available technology (Figure 1). Examples include going straight from positive BC bottles into currently available automated susceptibility instruments that can also provide identification (a non–FDA-cleared approach) [13] or placing antibiotic disks directly onto subculture plates from positive BC bottles alongside MALDI-ToF MS–based identification performed on subculture plates after a short duration of incubation [14].

Another strategy is to apply molecular methods to positive bottles (Figure 1). Two broad molecular panels are FDA cleared for testing positive bottles (Table 2), the BCID, which includes gram-positive and gram-negative bacteria as well as yeast in a single panel, and the Verigene Gram-Positive Blood Culture Test (BC-GP) and Gram-Negative Blood Culture Test (BC-GN) (Nanosphere, Inc.), which are separate panels for gram-positive and gram-negative bacteria. Cepheid (California) offers an assay, Xpert MRSA/SA Blood Culture, for rapid detection of methicillin-susceptible and methicillin-resistant Staphylococcus aureus (MRSA) in positive BC bottles. Peptide nucleic acid fluorescence in situ hybridization (FISH) assays from AdvanDx, Inc. (Massachusetts) allow detection of a limited number of organism types as well as mecA. Prove-it Sepsis (Mobidiag, Finland) and the Unyvero BCU Application (Curetis, Germany) are broad panels available in Europe. These assays provide identification and detect select antibacterial resistance genes in 1 to 4 hours. They are easy to use but costly. Clinician ordering of these molecular tests is not practical because of associated delays, so laboratories must decide whether and when to use these “add-on” tests. For example, if they were used, only the first positive bottle from a patient in a certain period would warrant testing.

Table 2.

Molecular Tests for Positive Blood Culture Bottles

Gram-Positive Bacteria Gram-Negative Bacteria Candida Species
Xpert MRSA/SA Blood Culture (Cepheid, Sunnyvale, California)
Staphylococcus aureus
Resistance Gene
mecA
FilmArray Blood Culture Identification (BCID) Panel (BioFire Diagnostics, LLC, Salt Lake City, Utah)
Staphylococcus species
Staphylococcus aureus
Streptococcus species
Streptococcus agalactiae
Streptococcus pyogenes
Streptococcus pneumoniae
Enterococcus species
Listeria monocytogenes
Klebsiella oxytoca
Klebsiella pneumoniae
Serratia species
Proteus species
Acinetobacter baumannii
Haemophilus influenzae
Neisseria meningitidis
Pseudomonas aeruginosa
Enterobacteriaceae
Escherichia coli
Enterobacter cloacae complex
Candida albicans
Candida glabrata
Candida krusei
Candida parapsilosis
Candida tropicalis
Resistance Genes
mecA
vanA/vanB
Resistance Gene
blaKPC
Verigene (Nanosphere, Inc, Northbrook, Illinois)
Gram-Positive Blood Culture Test (BC-GP) Gram-Negative Blood Culture Test (BC-GN)
Staphylococcus aureus
Staphylococcus epidermidis
Staphylococcus lugdunensis
Streptococcus anginosus group
Streptococcus agalactiae
Streptococcus pneumoniae
Streptococcus pyogenes
Enterococcus faecalis
Staphylococcus species
Streptococcus species
Listeria species
Escherichia coli
Klebsiella pneumoniae
Klebsiella oxytoca
Pseudomonas aeruginosa
Acinetobacter species
Citrobacter species
Enterobacter species
Proteus species
Resistance Genes
mecA
vanA
vanB
Resistance Genes
blaNDM
blaKPC
blaOXA
blaVIM
blaCTX-M
QuickFISH (AdvanDx, Inc., Woburn, Massachusetts)
Staphylococcus QuickFISH
Staphylococcus aureus
Coagulase negative Staphylococcus species
Gram-Negative QuickFISH
Escherichia coli
Klebsiella pneumoniae
Pseudomonas aeruginosa
Candida QuickFISH
Candida albicans
Candida parapsilosis
Candida glabrata
Enterococcus QuickFISH
Enterococcus faecalis
Enterococcus faecium or other non-faecalis Enterococcus
Resistance Gene
mecA XpressFISH
mecA
Prove-it Sepsis (Mobidiag, Helsinki, Finland)a
Clostridium perfringens
Enterococcus casseliflavus
Enterococcus faecalis
Enterococcus faecium
Enterococcus gallinarum
Listeria monocytogenes
Propionibacterium acnes
Staphylococcus aureus
Staphylococcus epidermidis
Streptococcus agalactiae
Streptococcus dysgalactiae subspecies equisimilis
Streptococcus pneumoniae
Streptococcus pyogenes
Coagulase negative Staphylococcus
Acinetobacter baumannii
Enterobacter aerogenes
Enterobacter cloacae
Escherichia coli
Haemophilus influenzae
Kingella kingae
Klebsiella oxytoca
Klebsiella pneumoniae
Neisseria meningitidis
Proteus mirabilis
Proteus vulgaris
Pseudomonas aeruginosa
Salmonella enterica subspecies enterica
Serratia marcescens
Stenotrophomonas maltophilia
Bacteroides fragilis group
Campylobacter jejuni/coli
Enterobacteriaceae
Neisseria sp. non-meningitidis
Candida albicans
Candida dubliniensis
Candida glabrata
Candida guilliermondii
Candida krusei
Candida lusitaniae
Candida parapsilosis
Candida tropicalis
Pan-yeast
Resistance Genes
mecA
vanA
vanB
Unyvero BCU Application (Curetis, Holzgerlingen, Germany)a
Staphylococcus aureus
Coagulase negative staphylococci
Streptococcus species
Streptococcus agalactiae
Streptococcus pneumoniae
Streptococcus pyogenes/dysgalactiae
Enterococcus species
Enterococcus faecalis
Listeria monocytogenes
Corynebacterium species
Propionibacterium acnes
Mycobacterium species
Citrobacter freundii/koseri
Escherichia coli
Enterobacter cloacae complex
Enterobacter aerogenes
Klebsiella oxytoca
Klebsiella pneumoniae
Klebsiella variicola
Proteus species
Serratia marcescens
Acinetobacter baumannii complex
Pseudomonas aeruginosa
Stenotrophomonas maltophilia
Haemophilus influenzae
Neisseria meningitidis
Aspergillus species
Candida species
Candida albicans
Candida dubliniensis
Candida glabrata
Candida krusei
Candida parapsilosis
Candida tropicalis
Resistance Genes
vanA
vanB
mecA
mecC
ermA
Resistance Genes
aac(6′)aph(2″)
aacA4
blaNDM
blaKPC
blaVIM
blaCTX-M
blaIMP
blaOXA-23
blaOXA-24/40
blaOXA-48
blaOXA-58

a Available in Europe but not US Food and Drug Administration cleared.

The impact of rapid BC diagnostics (eg, MALDI-ToF MS, molecular diagnostics) on clinical and economic outcomes has been difficult to demonstrate, with mixed results reported (Supplementary Table 1). Clinical impact depends on multiple institution-specific factors, including local pathogen resistance rates, patient populations, antimicrobial prescribing practices, and antimicrobial stewardship program characteristics. Several studies have demonstrated decreased time to optimal therapy with rapid diagnostics (Supplementary Table 1). While some have reported rapid diagnostics to be associated with decreased length of stay [1522], lower mortality [15, 16, 2125], and reduced cost [15, 17, 21, 22, 24, 26, 27], others, including the only randomized controlled trial [28], have reported no such benefit compared with conventional subculture and susceptibility testing [2931]. Study design is an important consideration as use of historical controls may introduce bias.

Finding ways to integrate rapid diagnostics into clinical care and link results to treatment is a challenge to be addressed by individual institutions. Methods to communicate results to clinicians include telephone, email, text page, and electronic medical record–associated provider notification. Linking rapid test results to treatment guidance can occur through a variety of clinical decision-support strategies, including placing prescribing recommendations within the microbiology report, using audit and feedback by antimicrobial stewardship teams, and using more sophisticated computerized systems within electronic health records platforms that integrate clinical data, medication orders, and microbiology results to suggest appropriate antiinfective therapy or alert clinicians to modify suboptimal therapy [3234] (Supplementary Table 1).

Evidence, largely from observational studies, suggests that rapid testing together with stewardship interventions provide more favorable outcomes than rapid testing alone [13, 15, 16, 18, 21, 23, 24, 26, 27, 29, 3538] (Supplementary Table 1). In the only prospective randomized controlled trial to evaluate methods of test implementation, we found that antibiotic escalation was faster when rapid testing was implemented with templated comments in the microbiology report or with antimicrobial stewardship guidance [28]. However, antibiotic de-escalation was only enhanced when rapid testing was done together with antimicrobial stewardship intervention [28]. Our opinion is that reporting comments with prescribing guidance can enhance appropriate antibiotic use for straightforward scenarios, such as addition of vancomycin when a blood isolate is identified as MRSA or discontinuation of antibiotics when Staphylococcus epidermidis is detected and deemed a likely contaminant. In contrast, stewardship involvement is helpful for more complicated scenarios, such as antibiotic de-escalation in critically ill or immunocompromised patients. Stewardship teams can also help interpret reports of resistance gene detection, which may be unfamiliar to clinicians. It is not clear how best to coordinate rapid BC diagnostic testing and result reporting with antimicrobial stewardship activities. This depends on institutional stewardship practices. Some stewardship programs are notified of all positive BCs and perform audit and feedback on all patients with bacteremia. Programs with minimal funding or personnel may only be able to review select patients with bacteremia, such as those who have S. aureus bacteremia [39]. Decentralized stewardship is another possibility, especially to cover smaller hospitals that are part of a large healthcare system. Another strategy, common in Europe, is to have clinical microbiologists with a medical degree directly involved in antimicrobial stewardship, notifying clinicians of positive results as they are identified, while simultaneously providing treatment guidance. An important consideration is how to implement rapid diagnostic testing during off-hours and on weekends when stewardship interventionists may be unavailable. Automated, electronic clinical decision-support systems that provide clinicians with rapid test result interpretation and treatment guidance may be especially useful during off-hours. Although few studies are performed in such settings, rapid, easy-to-use, panel-based diagnostics may be particularly useful for small hospitals that lack expert microbiology staff and that may struggle with reading Gram stains from positive BC bottles.

Clinical microbiology laboratories need to select BC diagnostics based not only on test accuracy, turn-around-time, and work flow implications, but also on local resistance rates and mechanisms. Resistance mechanisms that are represented on molecular platforms must be fairly prevalent for such tests to be useful. For example, in regions of Sweden with extremely low MRSA rates, mecA detection would not add to clinical management of patients more so than rapid S. aureus identification, without susceptibility information. In contrast, in regions with high MRSA prevalence, rapid mecA detection can impact antimicrobial prescribing. In our prospective randomized controlled trial we found that use of the BCID panel led to more judicious antimicrobial use for treatment of gram-positive bacteremia but did not impact antimicrobial management of patients with gram-negative bacteremia. The sole gram-negative resistance determinant interrogated, blaKPC, was not identified in our study [28]. Current molecular platforms detect a limited number of resistance genes. Thus, for bloodstream infection with gram-negative bacteria, which can harbor multiple resistance mechanisms, these tests are helpful for escalating therapy when resistance is detected, but may not provide sufficient information to “rule out” resistance enabling antibiotic de-escalation. In institutions where broad-spectrum agents are commonly prescribed as empiric therapy for sepsis, antibiotic de-escalation is unlikely to be enhanced if available molecular platforms are used without additional stewardship interventions. Even so, due to potential resistance not identified by these platforms (eg, extended-spectrum β-lactamase or plasmid-mediated AmpC production with a concomitant porin mutation conferring carbapenem resistance), there may be reluctance to de-escalate. In this regard, rapid phenotypic susceptibility methods currently in development may have more clinical utility. In contrast, for gram-positive bacteria, currently available molecular platforms detect common resistance determinants such as mecA, vanA, and vanB and generally provide sufficient information to support antibiotic escalation or de-escalation. Technologies that provide early identification of organisms but do not provide antimicrobial susceptibility results (eg, MALDI-ToF MS) may not significantly impact antimicrobial prescribing, except when species identification predicts antimicrobial susceptibility (eg, Streptococcus pyogenes, Listeria monocytogenes) or possible contamination (eg, coagulase-negative Staphylococcus species), resistance rates are low (eg, low MRSA rates in Sweden), or patients are already known to harbor pathogens with specific susceptibility profiles (eg, in urine) that are subsequently detected in blood.

Several novel approaches are under development for BC-based diagnostics. A technology using a growth sensing strategy that detects volatiles outgassed by growing organisms, with the goal of not only earlier detection of positive results but “in-bottle” microbial identification, is being developed [40]. Several companies are developing automated systems for rapid phenotypic susceptibility testing that rapidly assess growth with and without antimicrobial agents using innovative strategies such as high-resolution imaging [41], individual cell mass measurement, and other sophisticated cell-counting methods. Given that BCs are typically incubated for 5 days before being resulted as negative, another strategy is to deploy methods for faster finalization of negative BCs. Finally, direct detection of bacteria in blood is under development, with no method currently FDA cleared. Future studies are needed to assess not only accuracy but also clinical usefulness of these approaches.

Semantics are a challenge with new diagnostics. As new techniques are adopted alongside conventional methods, clinicians may see a mixture of old and new tests being applied to the same patient to identify and perform susceptibility testing on a pathogen that is causing their infection, especially if the patient has multiple positive cultures (eg, blood and urine “isolates”). There may be differences in nomenclature between systems, resulting in the same organism being identified differently (eg, Proteus species vs Proteus mirabilis), and antimicrobial susceptibility panels may vary between systems.

In conclusion, novel platforms for rapid pathogen identification and antimicrobial susceptibility testing from BCs are available or in development and have potential to improve treatment and outcomes of bacteremia. However, before costly new diagnostics are routinely used, their impact on clinical outcomes and cost of care must be evaluated and strategies to optimally integrate testing into clinical practice developed. The optimal diagnostic test or implementation strategy needs to be individualized for each institution, based on unique microbiology, local prevalence of resistance mechanisms, antimicrobial prescribing patterns, and antimicrobial stewardship activities. Before implementing costly add-on tests, institutions can put in place process improvements to idealize collection of blood for culture, more rapidly place bottles on BC instruments, and more rapidly remove positive bottles from instruments, work them up and report results to clinicians. In our opinion, given that there is no single standard or universal strategy, it is imperative that healthcare institutions evaluate and optimize the systems that they have in place.

Supplementary Data

Supplementary materials are available at http://cid.oxfordjournals.org. Consisting of data provided by the author to benefit the reader, the posted materials are not copyedited and are the sole responsibility of the author, so questions or comments should be addressed to the author.

Supplementary Data

Notes

Acknowledgments. The authors thank the Antimicrobial Resistance Leadership Group of the National Institutes of Health (UM1 AI104681) and the Mayo Clinic–Karolinska Institutet Collaboration.

Potential conflicts of interest. R. P. reports grants from BioFire, Check-Points, Curetis, 3M, Merck, Hutchison Biofilm Medical Solutions, Accelerate Diagnostics, Allergan, and the Medicines Company. R. P. is a consultant to Curetis, Roche, Qvella, and Diaxonhit; monies are paid to Mayo Clinic. In addition, R. P. has a patent on Bordetella pertussis/parapertussis polymerase chain reaction issued, a patent on a device/method for sonication with royalties paid by Samsung to Mayo Clinic, and a patent on an antibiofilm substance issued. R. P. serves on an Actelion data monitoring board. R. P. receives travel reimbursement and an editor's stipend from the American Society of Microbiology and the Infectious Diseases Society of America, and honoraria from the National Board of Medical Examiners, Up-to-Date, and the Infectious Diseases Board Review Course. All other authors report no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.

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