Abstract
Cancer is one of the most significant health problems worldwide and thus the development of novel therapeutic agents with fewer side effects is required. The present study investigated the in vitro anticancer effects of a newly isolated fungal protein. In this study, Latcripin-15 (LP-15) regulator of chromosome condensation 1 (RCC1) domain protein, which is obtained from the Lentinula edodes C91-3 fungal strain, was identified, cloned, expressed, purified and re-folded to assess the in vitro antitumor activity of the protein. LP-15 RCC1 full-length cDNA was isolated from Lentinula edodes using 3′ and 5′-rapid amplification of cDNA ends and then cloned, expressed, purified and re-folded in vitro. In addition, the effects of the isolated LP-15 RCC1 protein's functional domain on the viability and apoptosis of human lung cancer A549 cells were assessed by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay, transmission electron microscopy, flow cytometry and Hoechst 33258 staining. The LP-15 RCC1 functional domain protein was successfully expressed, purified and re-folded in vitro. Treatment with the LP-15 RCC1 functional domain protein significantly reduced tumor cell viability and induced apoptosis in A549 cells. The results of the present study indicate that the LP-15 RCC1 functional domain requires further investigation as a novel therapeutic agent for cancer therapy.
Keywords: Latcripin-15, antitumor activity, apoptosis, Lentinula edodes, prokaryotic expression, RCC1 domain
Introduction
Although the early detection, prevention and treatment of cancer has significantly improved in recent decades, it remains the most prevalent and lethal disease, worldwide (1). Based on GLOBOCAN estimates, ~14.1 million new cancer cases and 8.2 million cancer-asssociated mortalities occurred in 2012 worldwide (2). Surgery remains the most effective method of curing or controlling the majority of cancers, however, advances in chemotherapy, radiotherapy and specific cancer targeting therapies have significantly improved patient survival, quality of life and prognosis (3). Thus, the development of more potent agents with fewer side effects is key to the effective control of cancer. At present, ongoing studies aim to identify novel and effective methods and novel therapeutics that may be used to combat cancer (1).
Recently, studies investigating medicinal fungi have become an important potential source of novel anticancer drugs (4,5). Lentinula edodes (Shiitake) is a type of edible fungus that has been considered medicinal for hundreds of years (6). Since 1991, increasing evidence has indicated that Lentinula edodes possesses a variety of antitumor, antivirus and immunomodulatory properties (7–9). In vivo and in vitro studies have confirmed that compounds produced by Lentinula edodes induce tumor cell apoptosis. Among these compounds, lentinan is considered to exhibit the most effective suppression of tumor cell proliferation (10–12). Following decades of study, a specialized strain of Lentinula edodes (Lentinula edodes C91-3) was generated and fermented protein derived from this strain has been demonstrated to induce apoptosis in numerous tumor cell types, such as A549, S180 and H22 cells (13–15).
In our previous study (16), the functional genomics of Lentinula edodes were investigated by obtaining high-quality DNA sequences (>4 four billion bases) using Illumina/Solexa technology. The data demonstrated the suitability of short-read DNA sequences for de novo assembly and annotation of genes expressed in eukaryotes without prior existing genome information. Our previous study also established a conventional naming system for Lentinula edodes transcriptomic proteins as Lentinula edodes transcriptome protein-(Number) (Latcripin-(Number), LP-(Number) and this nomenclature has been submitted and received by National Center for Biotechnology Information (NCBI) GenBank. In our previous study, the Latcripin-1 gene was cloned and expressed in Pichia pastoris and its antitumor properties were analyzed (13). In the present study, Latcripin-15 (LP-15) regulator of chromosome condensation 1 (RCC1) domain protein was identified, cloned, expressed, purified and re-folded from Lentinula edodes C91-3 and the potential of this protein as a novel anti-tumor agent was investigated in vitro.
Materials and methods
The shiitake strain, Lentinula edodes C91-3, was obtained from The Chinese General Microbiological Culture Collection Center (Beijing, China). Escherichia coli (E. coli) JM109, which was maintained in our laboratory, was used to amplify plasmids for cloning the LP-15 gene. E. coli Rosetta-gami (DE3) cells, used to facilitate expression of LP-15-RCC1 protein, were obtained from Novagen (Merck Millipore, Darmstadt, Germany). The pMD20-T cloning vector was purchased from Takara (Shiga, Japan), while the expression vector pET-32a(+) was purchased from Novagen (Merck Millipore).
The 3′-full rapid amplification of cDNA ends (RACE) core set (Version 2.0), 5′-full RACE kit, miniBEST plasmid purification kit (Version 3.0), miniBEST agarose gel DNA extraction kit (Version 3.0), EcoRI, XhoI, primers, competent cell preparation kit and in-fusion™ advantage polymerase chain reaction (PCR) cloning kit were also obtained from Takara. TRIzol reagent, mouse anti-His tag monoclonal antibody (catalog no. 66005-1), peroxidase-conjugated affinipure goat anti-mouse immunoglobulin (Ig)G (catalog no. SA00001-1) and nitrocellulose filter membranes were purchased from Invitrogen Life Technologies (Thermo Fisher Scientific, Inc., Waltham, MA, USA). Carbenicillin, chloramphenicol, kanamycin, tetracycline and isopropyl β-D-thiogalactopyranoside (IPTG) were purchased from Tiangen Biotech Co., Ltd., (Beijing, China). The 6xHis-tagged protein purification kit was purchased from CWBIO (Beijing, China). The bicinchoninic acid (BCA) Protein Assay Kit, Annexin V-fluorescein isothiocyanate (FITC)/propidium iodide (PI) kit and apoptotic cell Hoechst 33258 detection kit were obtained from Keygen Biotech Co., Ltd., (Nanjing, China). The integrated potato culture medium and other common laboratory reagents were prepared in our laboratory.
Cloning of LP-15 RCC1 functional domain cDNA and vector construction
Lentinula edodes C91-3 mycelium was cultured in integrated potato culture medium for 18 days at room temperature. Total RNA was isolated from mycelium culture using TRIzol reagent according to the manufacturer's instructions. Isolated RNA samples were then used as the RACE template. Briefly, primers for 3′-RACE and 5′-RACE experiments were designed using Oligo 6.0 software (Molecular Biology Insights, Inc., Colorado Springs, CO, USA) and Lentinula edodes C91-3 transcriptome sequences, as previously described (16). Experiments were performed using the abovementioned kits, according to the manufacturer's instructions, as previoulsy described (16). The resulting products were DNA sequenced. Full-length cDNA was amplified using PCR and the DNA was sequenced and compared using the NCBI database (http://blast.ncbi.nlm.nih.gov/Blast.cgi). The functional domain sequence of LP-15 was selected and predicted by online tools from Sanger Pfam (http://pfam.xfam.org/). A pair of primers was designed to amplify the functional domain of LP-15 by PCR: Forward, 5′-ATCGGATCCGAATTCCATGGCAATGTCTACACCTG-3′ and reverse, 5′-GTGGTGGTGCTCGAGCAATCCTACGACATGCTGAC-3′. The PCR conditions were as follows: 30 cycles of denaturing at 98°C for 10 sec, primer annealing at 55°C for 10 sec, extension at 72°C for 1 min and a final extension at 72°C for 5 min. After PCR amplification, a 6xHis-tag was added to the 3′end of the PCR product for characterization and identification (17,18). EcoRI and XhoI restriction sites were added to the N- and C-terminal, respectively, to enable in-fusion ligation (19).
The DNA-sequence-confirmed PCR products were purified using the miniBEST agarose gel DNA extraction kit (Version 3.0) and inserted into pET-32a(+) EcoRI and XhoI sites using the in-fusion™ advantage PCR cloning kit and E. coli JM109 competent cells. The complete construct was amplified in E. coli DE3 cells followed by DNA sequencing. The amino acid composition of the LP-15-RCC1 functional domain was analyzed using the ExPASy database (http://www.expasy.org/). The secondary structure and physicochemical properties of the LP-15-RCC1 functional domain were analyzed using DNAStar software (Version 5.07; DNASTAR Inc., Madison, WI, USA). The tertiary structure of the LP-15-RCC1 functional domain was predicted using the Swiss-Model database (https://swissmodel.expasy.org/interactive).
Expression and purification of the LP-15 RCC1 functional domain protein
pET-32a(+)-LP-15-RCC1 plasmid was transferred into E. coli DE3 cells for protein expression using an in vitro protein expression and purification kit. Briefly, a single bacterial colony was selected and cultured in 10 ml lysogeny broth (LB) medium containing 50 µg/ml carbenicillin, 34 µg/ml chloramphenicol, 15 µg/ml kanamycin and 12.5 µg/ml tetracycline at 37°C in a shaking incubator at 190 rpm overnight. The next day, the culture was transferred to 1 l LB medium with the same composition and grown at 37°C with shaking at 190 rpm until the optical density (OD), measured at a wavelength of 600 nm, was between 0.5 and 0.6. Next, 1.0 mM IPTG was added to the culture and incubated for an additional 6 h at 37°C. pET-32a(+) only was used as a negative control. Finally, the bacterial culture was collected and separated by centrifugation at 6,000 × g for 20 min at 4°C.
For protein purification, a portion of the bacterial pellet was subjected to western blot analysis with 12% sodium dodecyl sulfonate polyacrylate gel electrophoresis (SDS-PAGE) and a primary mouse monoclonal anti-His-antibody at a dilution of 1:250, followed by incubation with secondary peroxidase-conjugated goat anti-mouse IgG (H+L) antibody at a dilution of 1:5,000. Western blot analysis confirmed the presence of LP-15-RCC1 protein in the bacteria culture. Next, 100 mg bacteria pellets were lysed using 3 ml bacteria extraction reagent solution [1 ml bacteria extraction reagent, 1 µl DNase I (1,000 U/ml), 2 µl Lysozyme (50 mg/ml) and 10 µl phenylmethylsulfonyl fluoride] and incubated at room temperature for 30 min. After incubation, cell lysate was centrifuged at 10,000 x g for 20 min at 4°C to remove the supernatant. Next, the pellet was resuspended and dissolved in binding buffer (pH 7.9; 8 M urea, 5 mM imidazole, 0.5 M NaCl and 20 mM Tris-HCl; Keygen Biotech Co., Ltd.) at 4°C for 1 h. Solubilized protein was then separated from the insoluble cellular debris by centrifugation at 10,000 × g for 20 min at 4°C. The solubilized protein was purified using a nickel-chelated column and washed 15 times with binding buffer prior to elution of the bound protein with elution buffer (pH 7.9; 8 M urea, 500 mM imidazole, 0.5 M NaCl and 20 mM Tris-HCl). Each eluted fraction was analyzed by 12% SDS-PAGE to measure the purity of the protein.
Refolding the LP-15 RCC1 functional domain protein
The purified LP-15 RCC1 functional domain protein was refolded by gradient dialysis using four types of the refolding buffer at 4°C. The four dialysis buffers were: Dialysate 1 [4 M urea, 2 mM reduced glutathione (GSH) and 0.2 mM oxidized glutathione (GSSG) in phosphate-buffered saline (PBS)]; Dialysate 2 (2 M urea, 2 mM GSH and 0.2 mM GSSG in PBS); Dialysate 3 (2 mM GSH and 0.2 mM GSSG in PBS); and Dialysate 4 (PBS). Dialysate was replaced every 8 h and each concentration of dialysate was used three times. Finally, the refolded protein was concentrated using PEG 12000 (Sigma-Aldrich, Merck Millipore, Darmstadt, Germany) and quantified using the BCA protein assay kit.
Cell culture
The human lung cancer A549 cell line was obtained from the Shanghai Cell Bank, Chinese Academy of Sciences (Shanghai, China) and cultured in RPMI 1640 medium (HyClone Laboratories; GE Healthcare, Logan, UT, USA) supplemented with 10% fetal bovine serum (FBS; TransGen Biotech, Inc., Beijing, China) in a humidified atmosphere of 5% CO2 at 37°C (to 80% confluence). To assess the effects of the LP-15 RCC1 functional domain protein on the regulation of cellular behavior and gene expression, A549 cells were seeded in culture plates or flasks at a density of 1×105 cells/ml and cultured for 24 h. The growth medium was replaced with fresh RPMI 1640 medium with 10% FBS containing various concentrations (12.5, 25, 50, 100 and 200 µg) of the LP-15 RCC1 functional domain protein for the indicated periods of time (24 and 48 h) and cellular behavior was subsequently assessed.
3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) cell viability assay
The effect of the LP-15 RCC1 functional domain protein on the regulation of cell growth was determined using cell viability MTT assays. Briefly, LP-15 RCC1 functional domain protein with different concentrations (12.5, 25, 50, 100 and 200 µg) was added to cell culture for 24 or 48 h, then 10 µl of MTT solution was added to the cell culture medium (Sigma-Aldrich; Merck Millipore) and the cells cultured at 37°C in a 5% CO2 incubator for an additional 4 h. Next, the growth medium was replaced with 150 µl dimethyl sulfoxide (Sigma-Aldrich; Merck Millipore). Finally, the absorbance of the cell culture plates was measured at a wavelength of 589 nm using an ELISA microplate reader (Thermo Fisher Scientific Inc.). Cell viability was determined by the following equation: Cell viability (%) = [(control group OD - experimental group OD)/control group OD] × 100.
Transmission electron microscopy (TEM)
Changes in cellular ultrastructure were assessed following treatment with LP-15 RCC1 functional domain protein using TEM. Following treatment with 200 µg LP-15 RCC1 functional domain protein for 48 h, A549 cells were harvested and fixed in 2.5% glutaraldehyde solution (Sigma-Aldrich; Merck Millipore) at 4°C overnight. The next day, the cells were washed with 0.1 M PBS and postfixed with 1% (w/v) osmium tetroxide (Sigma-Aldrich; Merck Millipore) for 2 h at room temperature. After dehydration using a graded ethanol series (70–100%), cells were embedded in propylene oxide and epon (Sigma-Aldrich; Merck Millipore) and solidified at 60°C for 48 h in 100% epoxy resin (Sigma-Aldrich, Merck Millipore). Ultrathin sections (70 nm) were prepared, stained with uranyl acetate and lead citrate (Sigma-Aldrich) Merck Millipore and viewed under a TEM (JEOL Ltd., Tokyo, Japan).
Flow cytometry apoptosis assay
Flow cytometry was performed using FITC-labeled annexin V and PI to detect phosphatidylserine expression as an endpoint indicator of early apoptosis (20). Following 24 or 48 h treatment with 200 µg LP-15 RCC1 functional domain protein, A549 cells were collected and washed in cooled PBS and centrifuged at 111 × g for 5 min at room temperature. The pellets were then resuspended in 400 µl binding buffer and 5 µl FITC-labeled annexin V and 5 µl PI were added to the suspension. The cells were gently mixed, then incubated at the room temperature in the dark for 15 min. Fluorescence intensity was detected using a flow cytometer and analyzed using Cell Quest software (Version 3.3; Cell Quest, Inc., Tokyo, Japan).
Hoechst 33258 staining
Cells were cultured on coverslips and treated with 50 µg or 100 µg LP-15 RCC1 functional domain protein for 48 h. Cells were then stained with 5 µg Hoechst 33258 (Keygen Biotech Co., Ltd.) in PBS at room temperature in the dark for 10 min. After staining, the cells were washed twice with PBS and images were captured using a fluorescence microscope (Nikon Corporation, Tokyo, Japan) with an excitation wavelength of 330–380 nm.
Statistical analysis
All experiments were performed in duplicate and repeated at least three times. Data are expressed as the mean ± standard deviation. Treatment groups were compared using one-way analysis of variance with SPSS 13.0 (SPSS, Inc., Chicago, IL, USA). P<0.05 was considered to indicate a statistically significant difference.
Results
Cloning, expression and purification of LP-15 RCC1 functional domain protein
LP-15 RCC1 functional domain cDNA was cloned from Lentinula edodes C91-3 using 3′-RACE and 5′-RACE (Fig. 1A). DNA sequencing confirmed that the correct 720 base pair (bp) fragment had been cloned (Fig. 1B). The amino acid sequence of the LP-15 full-length cDNA coding sequence region has been submitted to GenBank (Accession Number, KF709447; Fig. 2A). The amino acid sequence of the LP-15 functional domain was analyzed using the Pfam database (http://pfam.xfam.org/). The result shown in the Pfam-A database matched the RCC1 domains: A 720 bp-long open reading frame encoding 240 amino acids (Fig. 2B). The amino acid composition of the LP-15 functional domain was analyzed using the ExPASy database (http://www.expasy.org/) (Fig. 2C). The secondary structure of the LP-15 functional domain indicated that it contained ordinary α, β, turn and coil regions (Fig. 2D). The tertiary structure of the LP-15-RCC1 functional domain is shown in Fig. 2E with a predicted molecular weight (MW) of 25.80 kDa and isoelectric point (pI) of 6.33. The predicted MW and pI of the pET-32a(+)-LP-15-RCC1 recombinant protein were 44.85 kDa and 6.09, respectively. After completing this analysis, the LP-15 RCC1 functional domain protein, which appeared at approximately 45 kDa on a 12% SDS-PAGE gel, was expressed, purified and refolded in vitro (Fig. 3).
LP-15 RCC1 functional domain protein reduces A549 cell viability
The effect of the LP-15 RCC1 functional domain protein on the regulation of A549 cell viability was assessed. Following tumor cell incubation with various concentrations of LP-15 RCC1 functional domain protein for 24 h or 48 h, tumor cell viability was significantly reduced in a time- and dose-dependent manner (P<0.001; Fig. 4). In comparison to the controls, cell viability inhibition rates were 29.75±5.8, 37.50±4.2 and 45.16±1.85 after 48 h treatment with 50, 100 and 200 µg RCC1 functional domain protein, respectively.
Treatment with LP-15 RCC1 functional domain protein induces morphological changes in A549 cells
The morphological changes in A549 cells following treatment with 200 µg LP-15 RCC1 functional domain protein for 48 h was assessed using TEM (Fig. 5). A549 cells in the control group maintained regular morphology, with a large nucleus, numerous mitochondria and membrane phase structural integrity (Fig. 5A). By contrast, after LP-15 RCC1 functional domain treatment, tumor cells exhibited apoptotic bodies, chromatin condensation, nuclear fragmentation and decreased numbers of mitochondria (Fig. 5B).
Treatment with LP-15 RCC1 functional domain protein induces apoptotic changes in A549 cells
Apoptotic A549 cells were identified using Hoechst 33258 staining following treatment with 50 and 100 µg LP-15 RCC1 functional domain protein for 48 h. Analysis of nuclear morphology identified cellular changes associated with apoptosis, such as chromatin condensation and fragmentation. Following 48 h treatment with 50 and 100 µg LP-15 RCC1 functional domain protein, fluorescence microscopy revealed apoptotic tumor cells exhibiting chromatin condensation (Fig. 6).
A459 cells were also analyzed using Annexin V/PI-flow cytometry following treatment with 100 and 200 µg LP-15 RCC1 functional domain protein for 24 and 48 h. After 24 h treatment with 100 and 200 µg LP-15 RCC1 functional domain protein, the early and advanced apoptosis rates of A549 cells were 1.92 and 21.38% and 2.81 and 25.82%, respectively. After 48 h treatment with 100 and 200 µg LP-15 RCC1 functional domain protein, the early and advanced apoptosis rates were 2.90 and 33.86% and 2.57 and 35.52%, respectively. These results indicate that treatment with LP-15 RCC1 functional domain protein increases the apoptosis rate of A549 cells in a dose-dependent manner (Fig. 7).
Discussion
The identification of novel anticancer drugs has progressed from a strategy that primarily focused on agents that kill tumor cells to a more mechanistic strategy focused on understanding the molecular targets involved in tumor signaling and tumor cell transformation (21). In the present study, a novel LP-15 RCC1 functional domain protein, obtained from Lentinula edodes C91-3, was identified, cloned, expressed, purified and refolded to assess the antitumor activity of the protein in vitro. The treatment of A549 cells with the LP-15 RCC1 functional domain protein significantly reduced tumor cell viability and induced tumor cells to undergo apoptosis. Thus, this protein presents a potential novel anticancer therapeutic agent, however, further in vivo studies are required.
The RCC1 domain of the LP-15 protein may be critical to its antitumor properties. RCC1 is a RAs-related nuclear protein (Ran) guanine nucleotide exchange factor for Ran guanosine triphosphate (GTP)ase, which exhibits a critical function in mitosis, nucleocytoplasmic transport and nuclear envelope assembly (22). RCC1 catalyzes the exchange of RanGDP to RanGTP, which is essential for nucleocytoplasmic transport (23) and spindle and nuclear envelope assembly during mitosis (24,25). Cáceres-Gorriti et al (26) demonstrated that the RAN network, including RAN's nucleocytoplasmic transport and mitotic functions, is dysregulated in serous ovarian carcinomas and this dysregulation affects tumor progression and patient survival. Wong et al (27) reported that nuclear RanGTP levels exhibit a crucial function in apoptosis initiation and RCC1 reads the histone code generated by caspase-activated Mst1 to initiate apoptosis by reducing RanGTP levels in the nucleus. Additionally, Zhou and Münger (28) reported that the chronic lymphocytic leukemia deletion gene 7 (Clld7) gene, which encodes an evolutionarily conserved protein carrying an RCC1 domain in addition to broad complex, tramtrack, bric-a-brac and POxvirus and Zinc finger domains, reduces cell viability. Clld7 depletion in normal human epithelial cells confers resistance to DNA damage-induced apoptosis (28). The present current study provides further evidence to support the hypothesis that the RCC1 domain protein possesses pro-apoptotic or programmed cell death activity.
Latcripin-1, a similar apoptosis-related protein isolated from the Lentinula edodes C91-3 transcriptome, has been expressed using a eukaryotic expression system (13). In our previous study, the Latcripin-13 RCC1 and plant homeodomain proteins were successfully expressed in a prokaryotic expression system (E. coli DE3) (14). As a result of our previous study, and due to the extensive amount of time and effort required to generate sufficient protein concentrations using the eukaryotic expression system, a prokaryotic expression system was selected for the present study. The advantages of the prokaryotic expression system include speed, high capacity, ease of operation and low cost (29–31). To date, few studies investigating the antitumor activity of RCC1 domain proteins have been reported in the literature. Thus, although the antitumor mechanism of RCC1 remains to be determined, the results of the present study represent a novel and significant step towards understanding the antitumor activity of this protein domain. However, the current study has a number of limitations, which must be considered. While the present study successfully demonstrated the antitumor activity of the LP-15 RCC1 domain protein in vitro, future studies are required to focus on understanding its molecular antitumor mechanisms. Additionally, in the future we aim to develop an in vivo expression system to express this protein directly in tumor cells and assess its antitumor activity and underlying mechanisms in vivo.
Acknowledgements
This study was supported in part by The National Natural Science Foundation of China (grant no. 81301995).
Glossary
Abbreviations
- DE3
Rosetta-gami
- RACE
rapid amplification of cDNA ends
- Clld7
chronic lymphocytic leukemia deletion gene 7
- MTT
3-(4,5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide
- TEM
transmission electron microscopy
- RCC1
regulator of chromosome condensation 1
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