Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1991 May 15;88(10):4080–4083. doi: 10.1073/pnas.88.10.4080

Effects of metal ions, including Mg2+ and lanthanides, on the cleavage of ribonucleotides and RNA model compounds.

R Breslow 1, D L Huang 1
PMCID: PMC51601  PMID: 1709734

Abstract

The cyclization/cleavage of 3',5'-uridyluridine to form 2',3'-cyclic uridylic acid is very effectively catalyzed by Eu3+, and the cyclization/cleavage of the 1-p-nitrophenyl phosphate ester of propane-1,2-diol also shows strong metal ion catalysis by Eu3+, Tb3+, and Yb3+. It also shows moderate catalysis by Mg2+, but not by Ca2+; Zn2+ and Pb2+ are also good catalysts. Various ligands activate these reactions further, and imidazole apparently acts as an additional base catalyst. Some cyclodextrin derivatives act to bind both the substrate and the metal ion but, contrary to what is reported elsewhere, there is no strong selectivity among nucleotides that can be ascribed to cyclodextrin binding.

Full text

PDF
4080

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Altman S. Ribonuclease P: an enzyme with a catalytic RNA subunit. Adv Enzymol Relat Areas Mol Biol. 1989;62:1–36. doi: 10.1002/9780470123089.ch1. [DOI] [PubMed] [Google Scholar]
  2. BAMANN E., TRAPMANN H., FISCHLER F. Verhalten und Spezifität von Cer und Lanthan als Phosphatase-Modelle gegenüber Nucleinsäuren und Mononucleotiden. Biochem Z. 1954;326(2):89–96. [PubMed] [Google Scholar]
  3. Breslow R., Huang D. L., Anslyn E. On the mechanism of action of ribonucleases: dinucleotide cleavage catalyzed by imidazole and Zn2+. Proc Natl Acad Sci U S A. 1989 Mar;86(6):1746–1750. doi: 10.1073/pnas.86.6.1746. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Brown R. S., Dewan J. C., Klug A. Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. Biochemistry. 1985 Aug 27;24(18):4785–4801. doi: 10.1021/bi00339a012. [DOI] [PubMed] [Google Scholar]
  5. Brown R. S., Hingerty B. E., Dewan J. C., Klug A. Pb(II)-catalysed cleavage of the sugar-phosphate backbone of yeast tRNAPhe--implications for lead toxicity and self-splicing RNA. Nature. 1983 Jun 9;303(5917):543–546. doi: 10.1038/303543a0. [DOI] [PubMed] [Google Scholar]
  6. Celander D. W., Cech T. R. Visualizing the higher order folding of a catalytic RNA molecule. Science. 1991 Jan 25;251(4992):401–407. doi: 10.1126/science.1989074. [DOI] [PubMed] [Google Scholar]
  7. Ciesiołka J., Marciniec T., Krzyzosiak W. Probing the environment of lanthanide binding sites in yeast tRNA(Phe) by specific metal-ion-promoted cleavages. Eur J Biochem. 1989 Jun 15;182(2):445–450. doi: 10.1111/j.1432-1033.1989.tb14851.x. [DOI] [PubMed] [Google Scholar]
  8. Eichhorn G. L., Butzow J. J. Interactions of metal ions with polynucleotides and related compounds. 3. Degradation of polyribonucleotides by lanthanum ions. Biopolymers. 1965;3(1):79–94. doi: 10.1002/bip.360030109. [DOI] [PubMed] [Google Scholar]
  9. Eichhorn G. L., Clark P., Tarien E. The interaction of metal ions with polynucleotides and related compounds. 13. The effect of metal ions on the enzymatic degradation of ribonucleic acid by bovine pancreatic ribonuclease and of deoxyribonucleic acid by bovine pancreatic deoxyribonuclease I. J Biol Chem. 1969 Feb 10;244(3):937–942. [PubMed] [Google Scholar]
  10. Marciniec T., Ciesiołka J., Wrzesinski J., Krzyzosiak W. J. Identification of the magnesium, europium and lead binding sites in E. coli and lupine tRNAPhe by specific metal ion-induced cleavages. FEBS Lett. 1989 Jan 30;243(2):293–298. doi: 10.1016/0014-5793(89)80148-6. [DOI] [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES