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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1991 Jun 1;88(11):5001–5005. doi: 10.1073/pnas.88.11.5001

From one gene to two proteins: the biogenesis of cytochromes b and c1 in Bradyrhizobium japonicum.

L Thöny-Meyer 1, P James 1, H Hennecke 1
PMCID: PMC51795  PMID: 1647023

Abstract

Genes coding for polyproteins that are cleaved posttranslationally into two or more functional proteins are rarely found in prokaryotes. One example concerns the biogenesis of the Bradyrhizobium japonicum cytochromes b and c1, two of the three constituent subunits of ubiquinol-cytochrome-c reductase (ubiquinol:ferricytochrome-c oxidoreductase, EC 1.10.2.2); the respective apoproteins for these subunits are encoded by the 5' and 3' halves of a single gene, fbcH. These two halves are linked by an extra piece of DNA encoding a characteristic signal peptide for protein translocation across the cytoplasmic membrane. Processing of the fbcH gene product is shown to occur at a typical signal peptidase recognition site. This reaction is reminiscent of that catalyzed by the regular bacterial signal peptidase that normally cleaves off presequences from the N termini of translocated proteins. Mutational alteration of the signal peptidase recognition site within FbcH results in the appearance of an uncleaved bc1 fusion protein in the membrane. Additionally, a functional heme-binding site in the apocytochrome c1 section of FbcH is shown to be a necessary prerequisite for the formation of the bc1 complex.

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Selected References

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  1. Aebersold R. H., Teplow D. B., Hood L. E., Kent S. B. Electroblotting onto activated glass. High efficiency preparation of proteins from analytical sodium dodecyl sulfate-polyacrylamide gels for direct sequence analysis. J Biol Chem. 1986 Mar 25;261(9):4229–4238. [PubMed] [Google Scholar]
  2. Akiyama Y., Inada T., Nakamura Y., Ito K. SecY, a multispanning integral membrane protein, contains a potential leader peptidase cleavage site. J Bacteriol. 1990 Jun;172(6):2888–2893. doi: 10.1128/jb.172.6.2888-2893.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Amons R. Vapor-phase modification of sulfhydryl groups in proteins. FEBS Lett. 1987 Feb 9;212(1):68–72. doi: 10.1016/0014-5793(87)81558-2. [DOI] [PubMed] [Google Scholar]
  4. Berry E. A., Trumpower B. L. Isolation of ubiquinol oxidase from Paracoccus denitrificans and resolution into cytochrome bc1 and cytochrome c-aa3 complexes. J Biol Chem. 1985 Feb 25;260(4):2458–2467. [PubMed] [Google Scholar]
  5. Bieker K. L., Silhavy T. J. The genetics of protein secretion in E. coli. Trends Genet. 1990 Oct;6(10):329–334. doi: 10.1016/0168-9525(90)90254-4. [DOI] [PubMed] [Google Scholar]
  6. Bolivar F., Backman K. Plasmids of Escherichia coli as cloning vectors. Methods Enzymol. 1979;68:245–267. doi: 10.1016/0076-6879(79)68018-7. [DOI] [PubMed] [Google Scholar]
  7. Bostian K. A., Elliott Q., Bussey H., Burn V., Smith A., Tipper D. J. Sequence of the preprotoxin dsRNA gene of type I killer yeast: multiple processing events produce a two-component toxin. Cell. 1984 Mar;36(3):741–751. doi: 10.1016/0092-8674(84)90354-4. [DOI] [PubMed] [Google Scholar]
  8. Bott M., Bolliger M., Hennecke H. Genetic analysis of the cytochrome c-aa3 branch of the Bradyrhizobium japonicum respiratory chain. Mol Microbiol. 1990 Dec;4(12):2147–2157. doi: 10.1111/j.1365-2958.1990.tb00576.x. [DOI] [PubMed] [Google Scholar]
  9. Ditta G., Stanfield S., Corbin D., Helinski D. R. Broad host range DNA cloning system for gram-negative bacteria: construction of a gene bank of Rhizobium meliloti. Proc Natl Acad Sci U S A. 1980 Dec;77(12):7347–7351. doi: 10.1073/pnas.77.12.7347. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Douglass J., Civelli O., Herbert E. Polyprotein gene expression: generation of diversity of neuroendocrine peptides. Annu Rev Biochem. 1984;53:665–715. doi: 10.1146/annurev.bi.53.070184.003313. [DOI] [PubMed] [Google Scholar]
  11. Figurski D. H., Helinski D. R. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc Natl Acad Sci U S A. 1979 Apr;76(4):1648–1652. doi: 10.1073/pnas.76.4.1648. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Gabellini N., Sebald W. Nucleotide sequence and transcription of the fbc operon from Rhodopseudomonas sphaeroides. Evaluation of the deduced amino acid sequences of the FeS protein, cytochrome b and cytochrome c1. Eur J Biochem. 1986 Feb 3;154(3):569–579. doi: 10.1111/j.1432-1033.1986.tb09437.x. [DOI] [PubMed] [Google Scholar]
  13. Hartl F. U., Neupert W. Protein sorting to mitochondria: evolutionary conservations of folding and assembly. Science. 1990 Feb 23;247(4945):930–938. doi: 10.1126/science.2406905. [DOI] [PubMed] [Google Scholar]
  14. Hennecke H., Günther I., Binder F. A novel cloning vector for the direct selection of recombinant DNA in E. coli. Gene. 1982 Sep;19(2):231–234. doi: 10.1016/0378-1119(82)90011-7. [DOI] [PubMed] [Google Scholar]
  15. Hunkapiller M. W., Lujan E., Ostrander F., Hood L. E. Isolation of microgram quantities of proteins from polyacrylamide gels for amino acid sequence analysis. Methods Enzymol. 1983;91:227–236. doi: 10.1016/s0076-6879(83)91019-4. [DOI] [PubMed] [Google Scholar]
  16. Krause J. E., MacDonald M. R., Takeda Y. The polyprotein nature of substance P precursors. Bioessays. 1989 Feb-Mar;10(2-3):62–69. doi: 10.1002/bies.950100207. [DOI] [PubMed] [Google Scholar]
  17. Kräusslich H. G., Wimmer E. Viral proteinases. Annu Rev Biochem. 1988;57:701–754. doi: 10.1146/annurev.bi.57.070188.003413. [DOI] [PubMed] [Google Scholar]
  18. Ljungdahl P. O., Pennoyer J. D., Robertson D. E., Trumpower B. L. Purification of highly active cytochrome bc1 complexes from phylogenetically diverse species by a single chromatographic procedure. Biochim Biophys Acta. 1987 May 6;891(3):227–241. doi: 10.1016/0005-2728(87)90218-0. [DOI] [PubMed] [Google Scholar]
  19. Matsudaira P. Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes. J Biol Chem. 1987 Jul 25;262(21):10035–10038. [PubMed] [Google Scholar]
  20. Messing J. New M13 vectors for cloning. Methods Enzymol. 1983;101:20–78. doi: 10.1016/0076-6879(83)01005-8. [DOI] [PubMed] [Google Scholar]
  21. Mukai K., Yoshida M., Toyosaki H., Yao Y., Wakabayashi S., Matsubara H. An atypical heme-binding structure of cytochrome c1 of Euglena gracilis mitochondrial complex III. Eur J Biochem. 1989 Jan 2;178(3):649–656. doi: 10.1111/j.1432-1033.1989.tb14494.x. [DOI] [PubMed] [Google Scholar]
  22. Nicholson D. W., Stuart R. A., Neupert W. Biogenesis of cytochrome c1. Role of cytochrome c1 heme lyase and of the two proteolytic processing steps during import into mitochondria. J Biol Chem. 1989 Jun 15;264(17):10156–10168. [PubMed] [Google Scholar]
  23. Page M. D., Ferguson S. J. A bacterial c-type cytochrome can be translocated to the periplasm as an apo form; the biosynthesis of cytochrome cd1 (nitrite reductase) from Paracoccus denitrificans. Mol Microbiol. 1989 May;3(5):653–661. doi: 10.1111/j.1365-2958.1989.tb00213.x. [DOI] [PubMed] [Google Scholar]
  24. Page M. D., Ferguson S. J. Apo forms of cytochrome c550 and cytochrome cd1 are translocated to the periplasm of Paracoccus denitrificans in the absence of haem incorporation caused either mutation or inhibition of haem synthesis. Mol Microbiol. 1990 Jul;4(7):1181–1192. doi: 10.1111/j.1365-2958.1990.tb00693.x. [DOI] [PubMed] [Google Scholar]
  25. Randall L. L., Hardy S. J. Unity in function in the absence of consensus in sequence: role of leader peptides in export. Science. 1989 Mar 3;243(4895):1156–1159. doi: 10.1126/science.2646712. [DOI] [PubMed] [Google Scholar]
  26. Regensburger B., Hennecke H. RNA polymerase from Rhizobium japonicum. Arch Microbiol. 1983 Aug;135(2):103–109. doi: 10.1007/BF00408017. [DOI] [PubMed] [Google Scholar]
  27. Schatz G. 17th Sir Hans Krebs lecture. Signals guiding proteins to their correct locations in mitochondria. Eur J Biochem. 1987 May 15;165(1):1–6. doi: 10.1111/j.1432-1033.1987.tb11186.x. [DOI] [PubMed] [Google Scholar]
  28. Sizmann D., Keilmann C., Böck A. Primary structure requirements for the maturation in vivo of penicillin acylase from Escherichia coli ATCC 11105. Eur J Biochem. 1990 Aug 28;192(1):143–151. doi: 10.1111/j.1432-1033.1990.tb19207.x. [DOI] [PubMed] [Google Scholar]
  29. Tanaka Y., Kubota I., Amachi T., Yoshizumi H., Matsubara H. Site-directedly mutated human cytochrome c which retains heme c via only one thioether bond. J Biochem. 1990 Jul;108(1):7–8. doi: 10.1093/oxfordjournals.jbchem.a123165. [DOI] [PubMed] [Google Scholar]
  30. Taylor J. W., Ott J., Eckstein F. The rapid generation of oligonucleotide-directed mutations at high frequency using phosphorothioate-modified DNA. Nucleic Acids Res. 1985 Dec 20;13(24):8765–8785. doi: 10.1093/nar/13.24.8765. [DOI] [PMC free article] [PubMed] [Google Scholar]
  31. Thöny-Meyer L., Stax D., Hennecke H. An unusual gene cluster for the cytochrome bc1 complex in Bradyrhizobium japonicum and its requirement for effective root nodule symbiosis. Cell. 1989 May 19;57(4):683–697. doi: 10.1016/0092-8674(89)90137-2. [DOI] [PubMed] [Google Scholar]
  32. Trumpower B. L. Cytochrome bc1 complexes of microorganisms. Microbiol Rev. 1990 Jun;54(2):101–129. doi: 10.1128/mr.54.2.101-129.1990. [DOI] [PMC free article] [PubMed] [Google Scholar]
  33. Uozumi N., Sakurai K., Sasaki T., Takekawa S., Yamagata H., Tsukagoshi N., Udaka S. A single gene directs synthesis of a precursor protein with beta- and alpha-amylase activities in Bacillus polymyxa. J Bacteriol. 1989 Jan;171(1):375–382. doi: 10.1128/jb.171.1.375-382.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  34. von Heijne G. Patterns of amino acids near signal-sequence cleavage sites. Eur J Biochem. 1983 Jun 1;133(1):17–21. doi: 10.1111/j.1432-1033.1983.tb07424.x. [DOI] [PubMed] [Google Scholar]

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