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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2017 Jan 1;73(Pt 1):53–55. doi: 10.1107/S2056989016019794

Crystal structure of catena-poly[[bis­(N-acethyl­thio­morpholine-κS)copper(I)]-μ-iodido]

Hojae Chiang a, Tae Ho Kim a,*, Hyunjin Park a, Jineun Kim a,*
PMCID: PMC5209771  PMID: 28083135

In the title compound, the CuI atom is coordinated by two S atoms and two I atoms in a distorted tetra­hedral mode.

Keywords: crystal structure, N-acetyl­thio­morpholine, coordination polymer, copper(I) iodide

Abstract

The reaction of copper(I) iodide with N-acetyl­thio­morpholine (L, C6H11NOS) in aceto­nitrile results in a coordination polymer with composition [CuI(L)2]n. The CuI atom is coordinated by two S atoms and two I atoms, adopting a distorted tetra­hedral environment. The μ2-bridging mode of the I atoms gives rise to chains extending parallel to [010]. C—H⋯O hydrogen-bonding inter­actions between the chains lead to a three-dimensional network.

Chemical context  

Synthesis, structures and luminescence properties of copper(I) complexes involving CuI and thio­ethers as co-ligands have been studied extensively (Harvey & Knorr, 2010; Knorr et al., 2010; Henline et al., 2014). The tendency of copper(I) iodide to form aggregates often leads to short Cu—Cu bonds and intriguing diversities in the respective crystal structures (Peng et al., 2010), comprising of [CuI]n chains with split stair motifs (Moreno et al., 1995; Blake et al., 1999; Cariati et al., 2002; Näther et al., 2003; Thébault et al., 2006), zigzag chains (Munakata et al., 1997) or helical chains (Munakata et al., 1997; Kang & Anson, 1995). Most of these structures include aromatic nitro­gen donor co-ligands. In this context we have studied the inter­action of N-acetyl­thio­morpholine with CuI to investigate the coordination behaviour of the copper(I) atom with the S donor atom of the N-acetyl­thio­morpholine co-ligand, because both are soft atoms in the sense of the HSAB concept. Although a number of copper(I) complexes with thio­ether ligands are known (Knorr et al., 2010; Henline et al., 2014), to the best of our knowledge, a [CuI]n chain structure has not been reported until now. Herein, we report a copper(I) coordination polymer with a zigzag chain [CuI]n, resulting from the reaction of CuI with N-acetyl­thio­morpholine (L).graphic file with name e-73-00053-scheme1.jpg

Structural commentary  

The asymmetric unit of the title compound, [CuI(L)2]n, comprises of a copper(I) iodide moiety and two N-acetyl­thio­morpholine co-ligands (L A and L B) and is shown in Fig. 1. The CuI atom has a slightly distorted tetra­hedral environment (Table 1). The two thio­morpholine rings have the stable chair conformation (Kang et al., 2015). The dihedral angles between acetyl CCO and thio­morpholine CNC planes are 3.9 (4) and 6.6 (2)° for L A and L B, respectively. The I atoms link neighboring CuI atoms in a μ 2 -bridging mode into polymeric zigzag chains extending parallel to [010] (Fig. 2).

Figure 1.

Figure 1

The asymmetric unit of the title compound, shown with displacement ellipsoids drawn at the 50% probability level. H atom are shown as small spheres of arbitrary radius.

Table 1. Selected geometric parameters (Å, °).

Cu1—S1 2.3012 (6) Cu1—I1 2.6221 (3)
Cu1—S2 2.3064 (6) Cu1—I1i 2.6476 (3)
       
S1—Cu1—S2 114.28 (2) S2—Cu1—I1 101.246 (16)
S1—Cu1—I1 112.179 (17) I1—Cu1—I1i 109.949 (9)

Symmetry code: (i) Inline graphic.

Figure 2.

Figure 2

The polymeric chain structure in [CuI(L)2] formed through the μ2-bridging mode of the I atoms. All H atoms have been omitted for clarity.

Supra­molecular features  

As shown in Fig. 3, C10—H10A⋯ O1 hydrogen bonds (yellow dashed lines) between the thio­morpholine ring of L B and the carbonyl oxygen atoms of L A result in a layered network parallel to (101). Additional C12—H12B⋯O2 hydrogen bonds between methyl groups of L B ligands and carbonyl oxygen atoms of neighbouring L B ligands (red dashed lines) form cyclic centrosymmetric dimers of N-acetyl­thio­morpholines. The combination of the [CuI]n chains and the two types of hydrogen-bonding inter­actions with additional C—H⋯O inter­actions (Table 2) leads to a three-dimensional network.

Figure 3.

Figure 3

The crystal structure of [CuI(L)2] in a projection along [010]. C—H⋯O hydrogen bonds are shown as yellow and red dashed lines. H atoms not involved in inter­molecular inter­actions have been omitted for clarity.

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4A⋯O2ii 0.99 2.52 3.241 (3) 129
C6—H6B⋯O2ii 0.98 2.47 3.418 (3) 162
C10—H10A⋯O1iii 0.99 2.58 3.144 (3) 116
C12—H12B⋯O2iv 0.98 2.59 3.372 (3) 137

Symmetry codes: (ii) Inline graphic; (iii) Inline graphic; (iv) Inline graphic.

Synthesis and crystallization  

Preparation of N-acetyl­thio­morpholine (L)

Thio­morpholine (1.03 g, 0.010 mol) and tri­ethyl­amine (1.03 g, 0.010 mol) in chloro­form (20 mL) were placed in a one-neck round-bottomed flask and kept at 273 K. Then, acetic anhydride (1.02 g, 0.010 mol) was added dropwise. The reactant mixture was stirred for approximately one day. The orange liquid product was purified by using short column chromatography (silica gel, 90% n-hexane and 10% ethyl acetate, Rf = 0.28; yield 1.08 g, 74.5%). 1H NMR (300 MHz, CDCl3) / ppm: 3.860 (triplet, 2H, CH2-N), 3.719 (triplet, 2H, CH2-N), 2.614 (triplet, 2H, CH2-S), 2.597 (triplet, 2H, CH2-S), 2.086 (singlet, 3H, CH3); 13C NMR (300MHz, CDCl3) / ppm: 168.919 (C=O); 48.993, 43.972 (N—C); 27.248, 27.740 (S—C), 21.527(CH3)

Preparation of [CuI(L)2]n

An aceto­nitrile (2 mL) solution of L (0.08 g, 0.55 mmol) was allowed to mix with an aceto­nitrile (3 mL) solution of CuI (0.052 g, 0.27 mmol). The colorless precipitate was filtered and washed with diethyl ether/aceto­nitrile (3/1 v/v) solution (yield 0.116 g, 88.5%). Single crystals suitable for X-ray analysis were obtained by slow evaporation.

Refinement  

Crystal data, data collection and structure refinement details are summarized in Table 3. All C-bound H atoms were positioned geometrically, with d(C—H) = 0.99 Å, U iso = 1.2U eq(C) for methyl­ene, and d(C—H) = 0.98 Å, U iso = 1.5U eq(C) for methyl groups.

Table 3. Experimental details.

Crystal data
Chemical formula [CuI(C6H11NOS)2]
M r 480.87
Crystal system, space group Monoclinic, P21/n
Temperature (K) 173
a, b, c (Å) 14.1513 (4), 7.6557 (2), 16.9423 (4)
β (°) 113.805 (1)
V3) 1679.34 (8)
Z 4
Radiation type Mo Kα
μ (mm−1) 3.39
Crystal size (mm) 0.40 × 0.10 × 0.02
 
Data collection
Diffractometer Bruker APEXII CCD
Absorption correction Multi-scan (SADABS; Bruker, 2014)
T min, T max 0.518, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 12664, 3306, 3020
R int 0.023
(sin θ/λ)max−1) 0.617
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.018, 0.045, 1.05
No. of reflections 3306
No. of parameters 183
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.51, −0.37

Computer programs: APEX2 and SAINT (Bruker, 2014), SHELXS97 and SHELXTL (Sheldrick, 2008), SHELXL2014 (Sheldrick, 2015), DIAMOND (Brandenburg, 2010) and publCIF (Westrip, 2010).

Supplementary Material

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989016019794/wm5347sup1.cif

e-73-00053-sup1.cif (435KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016019794/wm5347Isup2.hkl

e-73-00053-Isup2.hkl (181.5KB, hkl)

CCDC reference: 1522053

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

This research was supported by the Basic Science Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (No. 2015R1D1A4A01020317).

supplementary crystallographic information

Crystal data

[CuI(C6H11NOS)2] F(000) = 952
Mr = 480.87 Dx = 1.902 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
a = 14.1513 (4) Å Cell parameters from 8258 reflections
b = 7.6557 (2) Å θ = 2.4–27.4°
c = 16.9423 (4) Å µ = 3.39 mm1
β = 113.805 (1)° T = 173 K
V = 1679.34 (8) Å3 Plate, colourless
Z = 4 0.40 × 0.10 × 0.02 mm

Data collection

Bruker APEXII CCD diffractometer 3020 reflections with I > 2σ(I)
φ and ω scans Rint = 0.023
Absorption correction: multi-scan (SADABS; Bruker, 2014) θmax = 26.0°, θmin = 1.6°
Tmin = 0.518, Tmax = 0.746 h = −13→17
12664 measured reflections k = −9→9
3306 independent reflections l = −20→20

Refinement

Refinement on F2 0 restraints
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.018 H-atom parameters constrained
wR(F2) = 0.045 w = 1/[σ2(Fo2) + (0.0221P)2 + 0.5521P] where P = (Fo2 + 2Fc2)/3
S = 1.05 (Δ/σ)max = 0.003
3306 reflections Δρmax = 0.51 e Å3
183 parameters Δρmin = −0.37 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Cu1 0.18899 (2) 1.02851 (3) 0.16379 (2) 0.02035 (7)
I1 0.22857 (2) 1.36381 (2) 0.18629 (2) 0.02246 (6)
S1 0.01447 (4) 0.97167 (7) 0.10384 (3) 0.01843 (11)
S2 0.27317 (4) 0.95551 (7) 0.07682 (3) 0.01754 (11)
O1 −0.12671 (13) 0.4134 (2) 0.18413 (10) 0.0306 (4)
O2 0.55531 (13) 0.4901 (2) 0.13221 (10) 0.0326 (4)
N1 −0.12119 (14) 0.6992 (2) 0.15212 (11) 0.0222 (4)
N2 0.41457 (14) 0.6547 (2) 0.05909 (11) 0.0211 (4)
C1 −0.09223 (18) 0.6587 (3) 0.08061 (14) 0.0261 (5)
H1A −0.1457 0.7049 0.0264 0.031*
H1B −0.0897 0.5303 0.0747 0.031*
C2 0.01160 (17) 0.7356 (3) 0.09339 (15) 0.0237 (5)
H2A 0.0279 0.7034 0.0437 0.028*
H2B 0.0656 0.6845 0.1459 0.028*
C3 −0.03090 (17) 0.9830 (3) 0.18944 (13) 0.0204 (5)
H3A 0.0220 0.9323 0.2427 0.024*
H3B −0.0408 1.1068 0.2011 0.024*
C4 −0.13193 (17) 0.8852 (3) 0.16610 (14) 0.0226 (5)
H4A −0.1559 0.8994 0.2131 0.027*
H4B −0.1849 0.9365 0.1130 0.027*
C5 −0.13845 (16) 0.5668 (3) 0.19871 (13) 0.0227 (5)
C6 −0.1756 (2) 0.6151 (3) 0.26767 (15) 0.0301 (5)
H6A −0.2461 0.6610 0.2406 0.045*
H6B −0.1300 0.7045 0.3054 0.045*
H6C −0.1748 0.5114 0.3018 0.045*
C7 0.46423 (17) 0.8128 (3) 0.10528 (14) 0.0241 (5)
H7A 0.4710 0.8983 0.0640 0.029*
H7B 0.5345 0.7841 0.1480 0.029*
C8 0.40226 (17) 0.8939 (3) 0.15130 (14) 0.0244 (5)
H8A 0.4389 0.9987 0.1833 0.029*
H8B 0.3973 0.8093 0.1937 0.029*
C9 0.23472 (16) 0.7451 (3) 0.02483 (13) 0.0195 (4)
H9A 0.2295 0.6596 0.0668 0.023*
H9B 0.1658 0.7552 −0.0233 0.023*
C10 0.31244 (17) 0.6798 (3) −0.00969 (14) 0.0229 (5)
H10A 0.2879 0.5677 −0.0403 0.027*
H10B 0.3172 0.7653 −0.0518 0.027*
C11 0.46543 (18) 0.4999 (3) 0.07934 (14) 0.0234 (5)
C12 0.4073 (2) 0.3374 (3) 0.03610 (18) 0.0339 (6)
H12A 0.4529 0.2358 0.0560 0.051*
H12B 0.3837 0.3489 −0.0266 0.051*
H12C 0.3475 0.3221 0.0508 0.051*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Cu1 0.02182 (15) 0.01848 (14) 0.02120 (14) −0.00092 (11) 0.00916 (12) −0.00102 (10)
I1 0.03471 (10) 0.01382 (8) 0.01707 (8) −0.00131 (6) 0.00859 (7) −0.00134 (5)
S1 0.0196 (3) 0.0185 (3) 0.0176 (2) 0.0000 (2) 0.0080 (2) 0.00071 (19)
S2 0.0196 (3) 0.0148 (2) 0.0179 (2) −0.0001 (2) 0.0073 (2) −0.00149 (19)
O1 0.0306 (9) 0.0224 (9) 0.0302 (9) −0.0033 (7) 0.0034 (7) 0.0003 (7)
O2 0.0305 (10) 0.0403 (10) 0.0256 (9) 0.0143 (8) 0.0099 (8) 0.0080 (7)
N1 0.0240 (10) 0.0211 (10) 0.0236 (9) −0.0025 (8) 0.0119 (8) −0.0020 (7)
N2 0.0179 (9) 0.0209 (10) 0.0220 (9) 0.0008 (7) 0.0055 (8) −0.0049 (7)
C1 0.0296 (13) 0.0257 (12) 0.0245 (12) −0.0081 (10) 0.0123 (10) −0.0085 (9)
C2 0.0280 (12) 0.0194 (11) 0.0266 (11) 0.0000 (10) 0.0141 (10) −0.0055 (9)
C3 0.0245 (12) 0.0203 (11) 0.0184 (10) 0.0004 (9) 0.0108 (9) −0.0017 (8)
C4 0.0224 (12) 0.0221 (12) 0.0257 (11) 0.0038 (9) 0.0122 (10) 0.0023 (9)
C5 0.0128 (11) 0.0265 (12) 0.0199 (11) −0.0047 (9) −0.0025 (9) 0.0005 (9)
C6 0.0292 (13) 0.0332 (14) 0.0290 (12) −0.0054 (11) 0.0129 (11) 0.0064 (10)
C7 0.0185 (11) 0.0270 (12) 0.0246 (11) −0.0017 (10) 0.0065 (9) −0.0059 (9)
C8 0.0189 (12) 0.0299 (12) 0.0203 (11) 0.0004 (10) 0.0036 (9) −0.0079 (9)
C9 0.0179 (11) 0.0171 (10) 0.0197 (10) −0.0012 (9) 0.0036 (9) −0.0021 (8)
C10 0.0206 (11) 0.0246 (11) 0.0197 (11) 0.0009 (9) 0.0042 (9) −0.0065 (9)
C11 0.0311 (13) 0.0254 (12) 0.0234 (11) 0.0058 (10) 0.0211 (11) 0.0055 (9)
C12 0.0403 (15) 0.0210 (12) 0.0523 (16) 0.0006 (11) 0.0308 (13) 0.0014 (11)

Geometric parameters (Å, º)

Cu1—S1 2.3012 (6) C3—H3A 0.9900
Cu1—S2 2.3064 (6) C3—H3B 0.9900
Cu1—I1 2.6221 (3) C4—H4A 0.9900
Cu1—I1i 2.6476 (3) C4—H4B 0.9900
I1—Cu1ii 2.6476 (3) C5—C6 1.508 (3)
S1—C3 1.810 (2) C6—H6A 0.9800
S1—C2 1.815 (2) C6—H6B 0.9800
S2—C9 1.811 (2) C6—H6C 0.9800
S2—C8 1.814 (2) C7—C8 1.521 (3)
O1—C5 1.225 (3) C7—H7A 0.9900
O2—C11 1.227 (3) C7—H7B 0.9900
N1—C5 1.366 (3) C8—H8A 0.9900
N1—C1 1.460 (3) C8—H8B 0.9900
N1—C4 1.462 (3) C9—C10 1.523 (3)
N2—C11 1.357 (3) C9—H9A 0.9900
N2—C10 1.457 (3) C9—H9B 0.9900
N2—C7 1.459 (3) C10—H10A 0.9900
C1—C2 1.515 (3) C10—H10B 0.9900
C1—H1A 0.9900 C11—C12 1.508 (3)
C1—H1B 0.9900 C12—H12A 0.9800
C2—H2A 0.9900 C12—H12B 0.9800
C2—H2B 0.9900 C12—H12C 0.9800
C3—C4 1.518 (3)
S1—Cu1—S2 114.28 (2) O1—C5—N1 121.6 (2)
S1—Cu1—I1 112.179 (17) O1—C5—C6 120.6 (2)
S2—Cu1—I1 101.246 (16) N1—C5—C6 117.7 (2)
S1—Cu1—I1i 108.190 (16) C5—C6—H6A 109.5
S2—Cu1—I1i 110.870 (16) C5—C6—H6B 109.5
I1—Cu1—I1i 109.949 (9) H6A—C6—H6B 109.5
Cu1—I1—Cu1ii 126.245 (8) C5—C6—H6C 109.5
C3—S1—C2 97.16 (10) H6A—C6—H6C 109.5
C3—S1—Cu1 107.58 (7) H6B—C6—H6C 109.5
C2—S1—Cu1 102.08 (7) N2—C7—C8 111.16 (18)
C9—S2—C8 97.32 (10) N2—C7—H7A 109.4
C9—S2—Cu1 113.27 (7) C8—C7—H7A 109.4
C8—S2—Cu1 104.68 (7) N2—C7—H7B 109.4
C5—N1—C1 119.82 (18) C8—C7—H7B 109.4
C5—N1—C4 125.09 (18) H7A—C7—H7B 108.0
C1—N1—C4 115.07 (17) C7—C8—S2 112.12 (15)
C11—N2—C10 124.83 (18) C7—C8—H8A 109.2
C11—N2—C7 119.84 (18) S2—C8—H8A 109.2
C10—N2—C7 115.28 (17) C7—C8—H8B 109.2
N1—C1—C2 112.30 (18) S2—C8—H8B 109.2
N1—C1—H1A 109.1 H8A—C8—H8B 107.9
C2—C1—H1A 109.1 C10—C9—S2 110.89 (15)
N1—C1—H1B 109.1 C10—C9—H9A 109.5
C2—C1—H1B 109.1 S2—C9—H9A 109.5
H1A—C1—H1B 107.9 C10—C9—H9B 109.5
C1—C2—S1 112.54 (16) S2—C9—H9B 109.5
C1—C2—H2A 109.1 H9A—C9—H9B 108.0
S1—C2—H2A 109.1 N2—C10—C9 111.90 (17)
C1—C2—H2B 109.1 N2—C10—H10A 109.2
S1—C2—H2B 109.1 C9—C10—H10A 109.2
H2A—C2—H2B 107.8 N2—C10—H10B 109.2
C4—C3—S1 111.67 (14) C9—C10—H10B 109.2
C4—C3—H3A 109.3 H10A—C10—H10B 107.9
S1—C3—H3A 109.3 O2—C11—N2 121.7 (2)
C4—C3—H3B 109.3 O2—C11—C12 120.4 (2)
S1—C3—H3B 109.3 N2—C11—C12 117.9 (2)
H3A—C3—H3B 107.9 C11—C12—H12A 109.5
N1—C4—C3 111.95 (18) C11—C12—H12B 109.5
N1—C4—H4A 109.2 H12A—C12—H12B 109.5
C3—C4—H4A 109.2 C11—C12—H12C 109.5
N1—C4—H4B 109.2 H12A—C12—H12C 109.5
C3—C4—H4B 109.2 H12B—C12—H12C 109.5
H4A—C4—H4B 107.9
C5—N1—C1—C2 −120.4 (2) C11—N2—C7—C8 −120.0 (2)
C4—N1—C1—C2 61.1 (3) C10—N2—C7—C8 62.5 (2)
N1—C1—C2—S1 −59.4 (2) N2—C7—C8—S2 −60.5 (2)
C3—S1—C2—C1 52.97 (17) C9—S2—C8—C7 54.16 (18)
Cu1—S1—C2—C1 162.73 (14) Cu1—S2—C8—C7 170.60 (15)
C2—S1—C3—C4 −53.85 (17) C8—S2—C9—C10 −54.05 (16)
Cu1—S1—C3—C4 −158.97 (13) Cu1—S2—C9—C10 −163.52 (12)
C5—N1—C4—C3 119.1 (2) C11—N2—C10—C9 118.9 (2)
C1—N1—C4—C3 −62.5 (2) C7—N2—C10—C9 −63.8 (2)
S1—C3—C4—N1 61.7 (2) S2—C9—C10—N2 61.7 (2)
C1—N1—C5—O1 2.6 (3) C10—N2—C11—O2 172.7 (2)
C4—N1—C5—O1 −179.1 (2) C7—N2—C11—O2 −4.6 (3)
C1—N1—C5—C6 −175.7 (2) C10—N2—C11—C12 −8.6 (3)
C4—N1—C5—C6 2.6 (3) C7—N2—C11—C12 174.10 (19)

Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) −x+1/2, y+1/2, −z+1/2.

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C4—H4A···O2ii 0.99 2.52 3.241 (3) 129
C6—H6B···O2ii 0.98 2.47 3.418 (3) 162
C10—H10A···O1iii 0.99 2.58 3.144 (3) 116
C12—H12B···O2iv 0.98 2.59 3.372 (3) 137

Symmetry codes: (ii) −x+1/2, y+1/2, −z+1/2; (iii) −x, −y+1, −z; (iv) −x+1, −y+1, −z.

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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989016019794/wm5347sup1.cif

e-73-00053-sup1.cif (435KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016019794/wm5347Isup2.hkl

e-73-00053-Isup2.hkl (181.5KB, hkl)

CCDC reference: 1522053

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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