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. Author manuscript; available in PMC: 2017 Jan 9.
Published in final edited form as: Bioinformatics. 2013 Sep 12;29(23):3020–3028. doi: 10.1093/bioinformatics/btt530

Figure 3.

Figure 3

DOPE energy computed in the simulated proteins under the empirical and the neutral SCS substitution models and in the native protein, for the protein family “Phototactive yellow proteins”. Note that the DOPE energy is unnormalized with respect to the protein size and therefore scores from different proteins cannot be compared directly.