Table 3. Immune genes showing the highest global FST at nonsynonymous sites.
Gene | Chr | S | Nucleotide diversity (π) (×1000) | Fay and Wu’s H | Population differentiation (FST) | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Zim | Neth | Beij | Ith | Tas | Zim | Neth | Beij | Ith | Tas | Zim-Beij | Zim-Neth | Zim-Ith | Zim-Tas | Beij-Neth | Beij-Ith | Beij-Tas | Neth-Tas | Neth-Ith | Ith-Tas | Global | |||
Tak1 | X | 7 | 0.278 | 0.204 | 0.085 | 0.254 | 0.142 | −1.804 | 0.477 | 0.284 | −4.974 | −5.894 | 0.885 | 0.851 | 0.797 | 0.854 | 0.052 | 0.062 | 0.028 | 0.051 | 0.074 | 0.000 | 0.662 |
lectin-24A | 2L | 24 | 4.904 | 2.644 | 6.891 | 2.364 | 4.061 | −4.875 | −1.292 | 0.860 | −2.839 | −1.049 | 0.626 | 0.732 | 0.750 | 0.692 | 0.243 | 0.218 | 0.092 | 0.065 | 0.022 | 0.053 | 0.476 |
LysP | 3L | 4 | 2.740 | 0.321 | 0.814 | 0 | 0.339 | 0.821 | −4.216 | 0.402 | NA | −4.162 | 0.470 | 0.510 | 0.580 | 0.499 | 0.036 | 0.043 | 0.035 | 0.000 | 0.024 | 0.028 | 0.401 |
DptA | 2R | 5 | 4.330 | 2.595 | 0.000 | 3.996 | 5.455 | −0.215 | −3.465 | NA | −1.703 | −0.988 | 0.776 | 0.609 | 0.473 | 0.270 | 0.056 | 0.172 | 0.311 | 0.137 | 0.047 | 0.048 | 0.342 |
Ect4 | 3L | 23 | 0.875 | 0.333 | 0.598 | 0.403 | 0.556 | 1.538 | −0.572 | −3.446 | −3.677 | −3.655 | 0.494 | 0.610 | 0.590 | 0.518 | 0.055 | 0.107 | 0.032 | 0.035 | 0.033 | 0.029 | 0.342 |
slpr | X | 15 | 1.136 | 0.270 | 0.456 | 0.107 | 0.203 | 0.294 | 0.646 | 0.426 | 0.537 | 0.610 | 0.202 | 0.394 | 0.439 | 0.413 | 0.418 | 0.479 | 0.432 | 0.012 | 0.038 | 0.000 | 0.340 |
Eb1 | 2R | 2 | 0.662 | 0.000 | 0.355 | 0.810 | 0.459 | 0.578 | NA | 0.480 | −2.043 | −2.644 | 0.592 | 0.726 | 0.429 | 0.525 | 0.122 | 0.015 | 0.000 | 0.069 | 0.164 | 0.006 | 0.337 |
hep | X | 19 | 0.731 | 0.167 | 0.690 | 0.716 | 0.750 | 0.911 | −1.777 | −1.500 | −2.023 | −1.252 | 0.462 | 0.732 | 0.527 | 0.452 | 0.265 | 0.048 | 0.003 | 0.221 | 0.087 | 0.037 | 0.336 |
Tl | 3R | 36 | 2.940 | 1.137 | 1.067 | 0.803 | 1.154 | 0.040 | 1.191 | 1.095 | −1.434 | 1.597 | 0.393 | 0.401 | 0.528 | 0.390 | 0.023 | 0.403 | 0.075 | 0.053 | 0.346 | 0.325 | 0.335 |
PGRP-LE | X | 9 | 0.540 | 1.384 | 0.307 | 1.637 | 1.895 | 0.595 | −0.309 | 0.480 | 0.679 | 0.552 | 0.762 | 0.450 | 0.254 | 0.322 | 0.652 | 0.411 | 0.394 | 0.076 | 0.109 | 0.008 | 0.332 |
Dsp1 | X | 1 | 0 | 0 | 0.520 | 0 | 0 | NA | NA | 0.546 | NA | NA | 0.292 | NA | NA | NA | 0.326 | 0.342 | 0.334 | NA | NA | NA | 0.317 |
dnr1 | 2R | 5 | 0.261 | 0.434 | 0.113 | 0.541 | 0.272 | 0.451 | −1.145 | 0.284 | 0.647 | 0.477 | 0.039 | 0.583 | 0.126 | 0.052 | 0.588 | 0.076 | 0.000 | 0.499 | 0.287 | 0.028 | 0.308 |
Vps33B | 3R | 33 | 3.326 | 0.613 | 3.352 | 1.383 | 1.791 | 0.883 | −2.409 | −0.549 | −4.373 | −4.415 | 0.265 | 0.628 | 0.541 | 0.446 | 0.209 | 0.143 | 0.061 | 0.082 | 0.021 | 0.033 | 0.304 |
Adgf-A | 3L | 14 | 0.606 | 1.002 | 1.168 | 1.086 | 1.410 | −3.002 | −0.831 | −0.351 | −0.077 | −1.049 | 0.388 | 0.630 | 0.543 | 0.153 | 0.285 | 0.132 | 0.073 | 0.343 | 0.066 | 0.212 | 0.301 |
modSP | 3R | 8 | 0.589 | 0.291 | 0.285 | 0.196 | 0.292 | −0.537 | 0.607 | 0.502 | 0.537 | 0.611 | 0.502 | 0.516 | 0.433 | 0.300 | 0.060 | 0.082 | 0.158 | 0.176 | 0.106 | 0.005 | 0.299 |
crq | 2L | 4 | 0.135 | 0.092 | 0.117 | 0.450 | 0 | 0.318 | 0.234 | 0.284 | 0.331 | NA | 0.037 | 0.037 | 0.323 | 0.058 | 0.031 | 0.337 | 0.043 | 0.024 | 0.363 | 0.398 | 0.297 |
Atf-2 | 2R | 5 | 1.534 | 0.535 | 0.941 | 0.741 | 1.035 | −0.436 | 0.595 | −1.134 | 0.810 | 0.828 | 0.236 | 0.475 | 0.395 | 0.255 | 0.474 | 0.357 | 0.361 | 0.100 | 0.000 | 0.071 | 0.292 |
Eph | 4 | 5 | 0.202 | 0.152 | 0.053 | 0.221 | 0.203 | −0.693 | 0.546 | 0.284 | 0.575 | 0.704 | 0.556 | 0.481 | 0.469 | 0.449 | 0.082 | 0.209 | 0.098 | 0.005 | 0.155 | 0.045 | 0.284 |
CHKov1 | 3R | 15 | 5.429 | 1.783 | 3.623 | 2.430 | 4.302 | 0.281 | −8.288 | −5.975 | −7.584 | −3.864 | 0.402 | 0.571 | 0.530 | 0.356 | 0.038 | 0.037 | 0.000 | 0.066 | 0.000 | 0.048 | 0.273 |
DptB | 2R | 8 | 6.550 | 2.893 | 0.488 | 4.407 | 4.041 | 1.153 | −2.478 | 0.284 | −0.959 | −0.673 | 0.638 | 0.453 | 0.306 | 0.280 | 0.191 | 0.206 | 0.305 | 0.043 | 0.053 | 0.007 | 0.272 |
Values that fall in the extreme 5% of the population’s distribution are marked with italic font. Chr, chromosome; S, number of segregating sites; Zim, Zimbabwe; Neth, the Netherlands; Beij, Beijing; Ith, Ithaca, NY; Tas, Tasmania.