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. 2016 Oct 5;12(6):4779–4784. doi: 10.3892/ol.2016.5229

Upregulated miR-193a-3p as an oncogene in esophageal squamous cell carcinoma regulating cellular proliferation, migration and apoptosis

Yunfeng Yi 1, Jianming Chen 1, Changjie Jiao 1, Jing Zhong 1, Zhiming Song 1, Xiaoping Yu 1, Xiujuan Lu 1, Baoli Lin 1,✉
PMCID: PMC5228478  PMID: 28105186

Abstract

MicroRNAs (miRs) are small endogenous non-coding RNAs that play a vital role in carcinogenesis. miR-193a-3p has been described in multiple cancers. However, the function of miR-193a-3p in esophageal squamous cell carcinoma (ESCC) is still unclear. To explore the role of miR-193a-3p in ESCC, reverse transcription-quantitative polymerase chain reaction was used to evaluate the expression of miR-193a-3p in 48 paired ESCC and adjacent normal tissues. In addition, the impact of miR-193a-3p on cell proliferation, migration and apoptosis were analyzed by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay, wound scratch assay and flow cytometry, respectively. The results revealed that miR-193a-3p was upregulated in ESCC, compared with adjacent normal tissues. Downregulation of miR-193a-3p expression using a synthesized inhibitor suppressed cell proliferation and migration, and induced cell apoptosis, indicating that miR-193a-3p could be characterized as an oncogene in ESCC. In summary, the present study demonstrated that miR-193a-3p was upregulated in ESCC, where it plays a significant role by affecting cellular proliferation, migration and apoptosis.

Keywords: ESCC, miR-193a-3p, upregulated, oncogene

Introduction

Esophageal carcinoma is the fifth and eighth most common cause of mortality worldwide in men and women, respectively (1). In Eastern Asia, esophageal squamous cell carcinoma (ESCC) is the predominant type of esophageal carcinoma, with >100 cases/100,000 population reported annually (2). ESCC is also the major histological type in Chinese populations, resulting in 150,000 mortalities annually (3). Despite the availability of multiple treatments for ESCC, surgical resection remains the primary choice for non-metastatic cases (4). However, even upon curative surgery, the 5-year survival rate for ESCC patients is only 26.2–49.4%, due to local or distant recurrences (5). Therefore, it is critical to identify novel molecular mechanisms to elucidate ESCC oncogenesis and metastasis.

MicroRNAs (miRs) are small endogenous non-coding RNAs that play vital roles in various biological processes (6,7). Mature microRNAs usually bind to 3′-untranslated regions (3′-UTRs) of target genes, leading to messenger RNA degradation or repression of translation, thus downregulating the expression of target genes at post-transcriptional levels (6,8). Since the first microRNA (microRNA-lin-4) was identified in 1993, an increasing number of microRNAs have been reported to be involved in numerous physiological and pathological processes, including carcinogenesis (9,10). Several microRNAs, including miR-21, miR-34a and miR-155, have been observed to be associated with carcinogenesis by targeting oncogenes or anti-oncogenes (11–13).

In the present study, the expression of miR-193a-3p was examined in ESCC specimens, and the function of miR-193a-3p in ESCC cells was investigated via cell migration, proliferation and apoptosis assays. The results revealed that miR-193a-3p was upregulated in ESCC tissues and functioned as an oncogene in ESCC by affecting cellular migration, proliferation and apoptosis.

Materials and methods

ESCC tissue samples collection

All ESCC tissues and adjacent normal tissues used in the present study were collected from Dongnan Affiliated Hospital of Xiamen University (Zhangzhou, China) between February, 2013 and December, 2014. Written informed consent was obtained from all patients. The collection and use of these samples was approved by the Ethics Committee of Dongnan Affiliated Hospital of Xiamen University. Fresh ESCC and adjacent normal tissues were immersed in RNAlater (Qiagen GmbH, Hilden, Germany) in 30 min following resection, and subsequently stored at −80°C.

RNA isolation and reverse transcription-quantitative polymerase chain reaction (RT-qPCR)

According to the manufacturer's protocol, total RNA was extracted with TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA) and purified with RNeasy Maxi kit (Qiagen GmbH). Total RNA (1 µg of each sample) was used for RT using miScript RT kit (Qiagen GmbH) to obtain the complementary DNA (cDNA) templates. qPCR reaction of miR-193a-3p was performed in an ABI PRISM® 7000 Real-Time PCR System (Applied Biosystems; Thermo Fisher Scientific, Inc.) using miScript SYBR Green PCR kit (Qiagen GmbH). U6 was used as an endogenous control. The 20 µl reaction mixture contained 2X QuantiTect SYBR Green PCR Master mix (10 µl), 10X miScript Universal Primer (2 µl), specific microRNA primer (0.4 µl), cDNA template (1 µl) and RNase-free water. The forward primer of miR-193a-3p was 5′-AACTGGCCTACAAAGTCCCAGT-3′ and the reverse primer was provided in the miScript SYBR Green PCR kit. The forward primer and reverse primers of U6 were 5′-CTCGCTTCGGCAGCACA-3′ and 5′-ACGCTTCACGAATTTGCGT-3′, respectively. Amplification conditions were set as: 95°C for 2 min, followed by 40 cycles of 94°C for 15 sec, 58°C for 30 sec and 72°C for 30 sec.

Cell culture and transfection

The human ESCC cell lines Eca109 and TE-1 used in the present study were purchased from the Shanghai Institute of Biochemistry and Cell Biology (Shanghai, China), and were cultured in RPMI 1640 (Invitrogen; Thermo Fisher Scientific, Inc.) supplemented with 10% fetal bovine serum (Invitrogen; Thermo Fisher Scientific, Inc.), 100 U/ml penicillin and 100 g/ml streptomycin at 37°C in a humidified incubator containing 5% CO2. For the downregulation of miR-193a-3p expression, a synthesized miR-193a-3p inhibitor (Shanghai GenePharma Co., Ltd., Shanghai, China) was transfected into the cells using Lipofectamine 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. The transfection efficiency and changes in miR-193a-3p expression were determined by fluorescence microscopy and RT-qPCR, respectively.

Migration assay

The migratory ability of ESCC cells (Eca109 and TE-1) in vitro was assessed by wound scratch assay. Approximately 150,000 cells were seeded in a 12-well dish and were transfected with miR-193a-3p inhibitor (60 pmol) or negative control (60 pmol) with Lipofectamine 2000 24 h later. After 5 h of transfection, a vertical wound was created with the tip of a sterile 10-µl pipette, and markers were assigned to enable the observation of cells in the correct location. The cells were then rinsed three times with phosphate-buffered saline (PBS) and incubated at 37°C. Images of the wound scratches were captured with a digital camera system at 0 and 24 h after the wounds were made at the same location. Wound widths (µm) were measured with a standard caliper, and the experiments were performed in triplicate and analyzed by at least two observers.

3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay

Cell proliferation of ESCC lines (Eca109 and TE-1) was assessed with an MTT assay kit (Sigma-Aldrich, St. Louis, MO, USA). Approximately 5,000 cells were seeded into 96-well plates and transfected with 5 pmol of miR-193a-3p inhibitor or negative control. Next, 20 µl of MTT (5 mg/ml; Sigma-Aldrich) was added to the culture medium of each well at 0, 24, 48 and 72 h post-transfection. After incubation for 4 h, the MTT medium was removed, and 150 µl of dimethyl sulfoxide was added. After shaking for 15 min at room temperature, the optical density (OD) of each sample was assessed with an enzyme-linked immunosorbent assay instrument (model 680; Bio-Rad Rad Laboratories, Inc., Hercules, CA, USA) at a wavelength of 490/630 nm.

Flow cytometry

For apoptosis assay, ESCC cells (Eca109 and TE-1) were cultured in 6-well plates at 37°C and transfected with miR-193a-3p inhibitor or negative control at a confluence of ~65%. After 48 h of transfection, cells were harvested and washed twice with cold PBS, resuspended in 10 µl 1X binding buffer (Invitrogen; Thermo Fisher Scientific, Inc.). Subsequently, 5 µl of Annexin V-fluorescein isothiocyanate (Invitrogen; Thermo Fisher Scientific, Inc.) and 10 µl of propidium iodide were added to each sample. The fluorescence of the stained cells was then analyzed by flow cytometry (Beckman Coulter, Inc., Brea, CA, USA) using an excitation wavelength of 488 nm within 30 min of staining, according to the manufacturer's protocol.

Statistical analysis

Statistical analysis was conducted with SPSS 17.0 statistical software package (SPSS, Inc., Chicago, IL, USA). Statistical significance was determined with paired t-test and Student's t test. P<0.05 was considered to indicate a statistically significant difference.

Results

Upregulation of miR-193a-3p in 36 paired ESCC tissues and adjacent normal tissues by RT-qPCR

RT-qPCR was used to determine the expression of miR-193a-3p in 36 paired ESCC tissues and adjacent normal tissues. The relative expression of miR-193a-3p is represented in Fig. 1A. As shown in Fig. 1B, the miR-193a-3p expression in ESCC tissues was significantly higher than that in adjacent normal tissues (P=0.0153).

Figure 1.

Figure 1.

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Expression of miR-193a-3p in 36 paired ESCC tissues and normal esophageal tissues. (A) Log2 ratios of miR-193a-3p expression in 36 paired ESCC tissues and normal esophageal tissues. (B) Relative expression of miR-193a-3p in ESCC tissues and normal esophageal tissues (P=0.0153). Data are presented as the mean ± standard error. ESCC, esophageal squamous cell carcinoma; miR, microRNA; T, ESCC tissues; N, normal tissues.

Transfection and inhibition efficiency

To determine the function of miR-193a-3p in ESCC, miR-193a-3p inhibitor and negative control were transfected into the ESCC cell lines Eca109 and TE-1. Images of the cells transfected with fluorescein amidite-labeled negative control were obtained at 6 h post-transfection, and revealed that the transfection efficiency was ~85 and 80% in Eca109 and TE-1 cells, respectively (Fig. 2A). Compared with the negative control, the relative expression of miR-193a-3p in Eca109 and TE-1 cells transfected with miR-193a-3p inhibitor was 5.5 and 7.3%, respectively (Fig. 2B). These results suggested that the miR-193a-3p inhibitor used in the present study was able to effectively downregulate the expression of miR-193a-3p.

Figure 2.

Figure 2.

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Analysis of transfection efficiency and miR-193a-3p expression levels by fluorescence microscopy and reverse transcription-quantitative polymerase chain reaction. (A) The transfection efficiency was 85 and 80% in Eca109 and TE-1 cells, respectively (magnification, ×200). (a) Eca109 cells transfected with Fam-labeled negative control. (b) Eca109 cells exhibiting green fluorescence 6 h after transfection with Fam-labeled negative control. (c) TE-1 cells transfected with Fam-labeled negative control. (d) TE-1 cells exhibiting green fluorescence 6 h after transfection with Fam-labeled negative control. (B) Fold-changes in miR-193a-3p expression in Eca109 and TE-1 cells treated with miR-193a-3p inhibitor or negative control were analyzed 24 h after transfection. Data are presented as the mean ± standard deviation. **P<0.01 vs. the negative control. All experiments were performed in triplicate. miR, microRNA; Fam, fluorescein amidite.

Downregulation of miR-193a-3p suppresses ESCC cell migration in vitro

Wound scratch assay was performed to determine the effects of miR-193a-3p on ESCC cell migration in vitro. Compared with the negative control group, the wound widths of Eca109 and TE-1 cells transfected with miR-193a-3p inhibitor were significantly wider (P=0.0322 and 0.0306, respectively; Fig. 3), which indicated that downregulation of miR-193a-3p inhibited the migration of ESCC cells (Fig. 3).

Figure 3.

Figure 3.

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Wound scratch assay for Eca109 and TE-1 cells 24 h after transfection. (A) Images of Eca109 cells transfected with miR-193a-3p inhibitor or negative control at 0 and 24 h after the wounds were made at the same point (scale bar=200 µm). (B) Comparison of wound widths (µm) in Eca109 cells using a standard caliper. (C) Images of TE-1 cells transfected with miR-193a-3p inhibitor or negative control at 0 and 24 h after the wounds were made at the same point (scale bar=200 µm). (D) Comparison of wound widths (µm) in TE-1 cells using a standard caliper. Data are presented as the mean ± standard error. *P<0.05 vs. the negative control. The experiments were performed in triplicate. T, time; miR, microRNA.

Reduction of miR-193a-3p inhibits cell proliferation

The impact of miR-193a-3p on cell proliferation in ESCC was analyzed by MTT assay. The OD values of miR-193a-3p inhibitor group and negative control group were measured at 0, 24, 48 and 72 h post-transfection. The results indicated that the proliferation of Eca109 cells decreased by 6.45% (P=0.0318), 10.63% (P=0.0131) and 14.19% (P=0.0019), while the proliferation of TE-1 cells decreased by 6.78% (P=0.0356), 11.51% (P=0.0152) and 14.72% (P=0.0025), at 24, 48 and 72 h post-transfection, respectively (Fig. 4). This indicated that downregulation of miR-193a-3p suppressed the proliferation of ESCC cells in vitro.

Figure 4.

Figure 4.

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3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide assay for cell proliferation assessment of Eca109 and TE-1 cells transfected with miR-193a-3p inhibitor or negative control. (A) Cell proliferation of Eca109 cells. (B) Cell proliferation of TE-1 cells. Data are presented as the mean ± standard deviation of three measurements. miR, microRNA; OD, optical density.

Inhibition of miR-193a-3p promotes ESCC cell apoptosis

To determine the function of miR-193a-3p on ESCC cell apoptosis, flow cytometry was performed to detect the apoptosis rates upon transfection. As represented in Fig. 5, the apoptosis rates of Eca109 cells transfected with miR-193a-3p inhibitor and negative control were 7.2 and 2.7% (P=0.0121), respectively, following transfection for 48 h. The apoptosis rates of TE-1 cells were 6.6 and 2.8% (P=0.0154) upon transfection with miR-193a-3p inhibitor and negative control, respectively. These results demonstrated that inhibition of miR-193a-3p induced ESCC cell apoptosis.

Figure 5.

Figure 5.

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Flow cytometry analysis of cell apoptosis in Eca109 and TE-1 cells transfected with miR-193a-3p inhibitor or negative control. (A) Eca109 cells transfected with miR-193a-3p inhibitor (left panel) or negative control (right panel). (B) TE-1 cells transfected with miR-193a-3p inhibitor (left panel) or negative control (right panel). (C) Comparison of apoptosis rates in cells transfected with miR-193a-3p inhibitor or negative control. Data are presented as the mean ± standard deviation of three measurements. *P<0.05 vs. the negative control. miR, microRNA; FITC, fluorescein isothiocyanate; PI, propidium iodide.

Discussion

Carcinogenesis involves the activation of a number of oncogenes and the inactivation of a number of anti-oncogenes (14). In the complicated regulatory network of oncogenes and anti-oncogenes, microRNAs plays a vital role by controlling the expression of target genes at post-transcriptional levels (15). By regulating the levels of oncogenes or anti-oncogenes, a microRNA can act as an anti-oncogene or as an oncogene (8). Although only accounting for a small fraction of the expressed genome, microRNAs play crucial roles in diverse cellular processes, including cell proliferation, cellular differentiation, cell death, metabolism, apoptosis, motility, invasion and morphogenesis (6,10,16–20). A number of microRNAs were observed to be upregulated in ESCC, including miR-21 (21–23), miR-205 (24), miR-10b (25), miR-23a (26), miR-26a (26), miR-27b (26), miR-96 (26), miR-128b (26), miR-129 (26), miR-93 (23), miR-192 (23) and miR-194 (23). In addition, downregulation of miR-375 (21), miR-203 (23), miR-205 (23), miR-27b (23), miR-125b (23) and miR-100 (23) expression has been detected in ESCC. Furthermore, numerous microRNAs were noticed to play the role of oncogene or anti-oncogene in ESCC, including miR-21, which facilitates ESCC growth by targeting phosphatase and tensin homolog and programmed cell death 4 (22,27); miR-296, which contributes to ESCC growth by targeting cyclin D1 and p27 (28); miR-210, which targets fibroblast growth factor receptor-like 1, thus exerting a negative effect on cell cycle and proliferation (29); miR-145, miR-133a and miR-133b, which converge to target fascin 1, thus reducing cell growth and invasion (30); and miR-593, which may contribute to carcinogenesis through polo-like kinase 1 (31).

miR-193a-3p can function as a tumor suppressor, since it inhibits cell-cycle progression and proliferation in breast cancer through targeting epidermal growth factor receptor-driven cell-cycle network proteins (32) and induces apoptosis in both U-251 and HeLa cells (33). In addition, miR-193a-3p suppresses the metastasis of human non-small-cell lung cancer (34,35). However, the expression and role of miR-193a-3p in ESCC remains unclear.

To determine the expression and role of miR-193a-3p in ESCC, RT-qPCR was used in the present study to quantify the miR-193a-3p level in 36 cases of ESCC tissues and paired normal tissues. The present study demonstrated that miR-193a-3p expression was significantly upregulated in ESCC tissues, compared with its expression levels in paired normal esophageal tissues. The effects of miR-193a-3p on ESCC cell migration, proliferation and apoptosis were then analyzed by transfection of ESCC cell lines with a synthetic miR-193a-3p inhibitor. Transfection of miR-193a-3p inhibitor into the ESCC cell lines Eca109 and TE-1 inhibited cellular proliferation and migration and induced apoptosis, compared with the negative control group. These findings suggested that miR-193a-3p may act as a oncogene in ESCC by inhibiting cellular proliferation and migration and by promoting cellular apoptosis. Further studies on miR-193a-3p target genes are required to clarify the mechanism of action of miR-193a-3p in ESCC.

The role of miR-193a-3p in different cancers appears to be controversial, as it was identified as a tumor suppressor in certain cancers (32–35) and as an oncogene in ESCC, according to the results of the present study. Regardless of experimental error, this contradiction may be explained as ‘imperfect’ complementary interactions between microRNAs and their target genes. Contrary to small interfering RNA, the interactions between microRNAs and the 3′-UTRs of their target genes are not always perfectly complementary (particularly in mammals), which leads to relative rather than complete specificity between microRNAs and their target genes (36). Accurate interactions between microRNAs and their target genes may be further dictated by cell types and the microenvironment, thus contributing to the divergent regulatory roles of certain microRNAs (6,37).

In conclusion, the present study revealed that miR-193a-3p was upregulated in ESCC and played a vital oncogenic role in ESCC by affecting cellular migration, proliferation and apoptosis. Further studies are required to define its mechanism of action in ESCC.

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