| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Antibodies | ||
| 647-IB4 (1:500, IHC) | Invitrogen | I32450 |
| Rabbti anti-CCK (1:1000, IHC) | Frontier Institute | CCK-pro-Rb-Af350 |
| Mouse anti-gephyrin(7A) (1:500, IHC) | SynapticSystems | 147 021 |
| Rabbit anti-gephyrin (1:100, AT) | BD Biosciences | 612632; RRID: AB_399669 |
| Chicken anti-GFP (1:100, AT) | GeneTex | GTX13970; RRID: AB_371416 |
| Chicken anti-GFP (1:1000, IHC, WM) | Aves | GFP 1020; RRID: AB_10000240 |
| Chicken anti-GFP (1:1000, IHC) | Abcam | 13970 |
| Rabbit anti-GFP (1:1000, IHC, WM) | Invitrogen | A11122; RRID: AB_221569 |
| Mouse anti-GluR2 (1:50, AT) | Millipore | MAB397; RRID: AB_2113875 |
| Rabbit anti-dsRed (1:1000, IHC, WM) | Clontech | 632496; RRID: AB_10013483 |
| Rabbit anti-Homer1 (1:500, AT; 1:1000, IHC) | Synaptic Systems | 160 003 |
| Goat anti-mCherry (1:500, WM) | Sicgen | Ab0040-200; RRID: AB_2333092 |
| Chicken anti-NFH (1:1000, IHC) | Aves | NFH0211 |
| Rabbit anti-NF200 (1:1000, WM) | Sigma | N4142; RRID: AB_477272 |
| Mouse anti-NeuN (1:1000, IHC | Millipore | MAB377; RRID: AB_2298772 |
| Goat anti-Parvalbumin (PV) (1:2000, IHC) | SWANT | PVG-213 |
| Guinea Pig anti-Parvalbumin (PV) (1:500, IHC) | Frontier Institute | PV-GP-Af1000; RRID: AB_2336938 |
| Rabbit anti-Parvalbumin (PV) (1:2000-1:3000, IHC) | SWANT | PV-25; RRID: AB_10000344 |
| Rabbit anti-PKCg (1:1000, IHC) | Santa Cruz | sc-211; RRID: AB_632234 |
| Guinea Pig anti-PKCg (1:1000, IHC) | Frontier Institute | PKCg-GP-Af350 |
| Goat anti-PKCg (1:500, IHC) | Frontier Institute | PKCg-Go-Af840 |
| Mouse anti-PSD95 (1:100, AT) | NeuroMab | 75-028; RRID: AB_2307331 |
| Rabbit anti-Synapsin1 (1:100, AT) | Millipore | AB1543; RRID:AB_2200400 |
| Rat anti-Troma1 (1:50, WM) | DSHB (U of Iowa) | TROMA-I; RRID: AB_531826 |
| Goat anti-vGAT (1:1000, IHC) | Frontier Institute | VGAT-Go-Af620 |
| Mouse anti-vGAT (1:100, AT; 1:1000, IHC) | Synaptic Systems | 131 011; RRID: AB_887868 |
| Guinea Pig anti-vGluT1 (1:1000-1:5000, IHC, AT) | Millipore | AB5905; RRID: AB_2301751 |
| Rabbit anti-vGluT1 (1:20000, IHC) | Synaptic Systems | 135 303; RRID: AB_887874 |
| Experimental Models: Organisms/Strains | ||
| Mouse: Cbln2-GFP (see Table S1A for genotyping primers and additional information) | GENSAT | BAC address: RP23-168P8-GFP |
| Mouse: Cdh3-GFP (see Table S1A for genotyping primers and additional information) | GENSAT | BAC address: RP23-199J15-GFP |
| Mouse: Cdh3-CreER (see Table S1B for genotyping primers and additional information) | This paper | BAC address: RP23-267K22-CreERT2 |
| Mouse: CCK-GFP (see Table S1A for genotyping primers and additional information) | GENSAT | BAC address: RP23-234I17-GFP |
| Mouse: CCKCreER (see Table S1B for genotyping primers and additional information) | Jackson Laboratories | JAX#012710 |
| Mouse: 5HTr6-GFP (see Table S1A for genotyping primers and additional information) | GENSAT | BAC address: RP23-65B16-GFP |
| Mouse: 5HTr6-CreER (see Table S1B for genotyping primers and additional information) | This paper | BAC address: RP23-65B16-CreERT2 |
| Mouse: Igfbp5-GFP (see Table S1A for genotyping primers and additional information) | GENSAT | BAC address: RP24-159O10-GFP |
| Mouse: Kcnip2-GFP (see Table S1A for genotyping primers and additional information) | GENSAT | BAC address: RP23-146N4-GFP |
| Mouse: Kcnip2-CreER (see Table S1B for genotyping primers and additional information) | This paper | BAC address: RP23-146N4-CreERT2 |
| Mouse: NeuroD4-GFP (see Table S1A for genotyping primers and additional information) | GENSAT | BAC address: RP23-55O18-GFP |
| Mouse: PKCγGFP | This paper | MGI: 97597 |
| Mouse: PKCγCreER | This paper | MGI: 97597 |
| Mouse: PV-tdTomato | Kaiser et al., 2016 | MGI: 97821 |
| Mouse: PVFlpO | Jackson Laboratories | JAX#022730 |
| Mouse: PV2A-CreER | Jackson Laboratories | JAX#028580 |
| Mouse: RorβGFP (see Table S1A for genotyping primers and additional information) | Liu et al., 2013 | MGI: 5548299 |
| Mouse: RorβCreER (see Table S1B for genotyping primers and additional information) | This paper | MGI: 5548299 |
| Mouse: R26CreER | Jackson Laboratories | JAX#004847 |
| Mouse: R26LSL-YFP (Ai3) | Jackson Laboratories | JAX#007903 |
| Mouse: R26LSL-tdTomato (Ai9) | Jackson Laboratories | JAX#007909 |
| Mouse: R26LSL-ChR2-YFP (Ai32) | Jackson Laboratories | JAX#007909 |
| Mouse: R26synaptophysin-tdTomato (Ai34) | Jackson Laboratories | JAX#012570 |
| Mouse: R26LSL-FSF-tdTomato (Ai65) | Jackson Laboratories | JAX#021875 |
| Mouse: RC::FPsit | Niederkofler et al., 2016 | See STAR Methods |
| Mouse: RC:FPtox | Kim et al., 2009 | See STAR Methods |
| Mouse: AdvillinCre | Hasegawa et al., 2007 | MGI:1333798 |
| Mouse: Emx1Cre | Jackson Laboratories | JAX#005628 |
| Mouse: Lbx1Cre | Sieber et al., 2007 | MGI: 104867 |
| Mouse: vGATiresCre | Jackson Laboratories | JAX#016962 |
| Mouse: GAD22A-mCherry | Jackson Laboratories | JAX#023140 |
| Mouse: vGluT2-YFP | Jackson Laboratories | JAX#017978 |
| Mouse: GAD67GFP | Tamamaki et al., 2003 | MGI: 95632 |
| Mouse: GlyT2-GFP | Punnakkal et al., 2014 | MGI: 105090 |
| Mouse: RetCreER | Luo et al., 2009 | MGI: 97902 |
| Mouse: RetfCFP | Uesaka et al., 2008 | MGI: 97902 |
| Mouse: TrkBCreER | Rutlin et al., 2015 | MGI: 97384 |
| Mouse: TrkCCreER | Bai et al., 2015 | MGI: 97385 |
| Mouse: TH2A-CreER | This paper | MGI: 98735 |
| Software and Algorithms | ||
| ImageJ Puncta Analyzer Plugin | Ippolito and Eroglu, 2010 | imagej.nih.gov/ij |
| Spot and puncta detection & co-localization analysis for array tomography (MATLAB scripts) | Saunders et al., 2015 | available upon request (lab of Dr. Bernardo Sabatini) |
| Neurolucida 360 | MBF Biosciences | http://www.mbfbioscience.com/neurolucida360 |
Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.