Skip to main content
Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1991 Oct 1;88(19):8322–8326. doi: 10.1073/pnas.88.19.8322

Identification of a nonsense mutation in the rod photoreceptor cGMP phosphodiesterase beta-subunit gene of the rd mouse.

S J Pittler 1, W Baehr 1
PMCID: PMC52500  PMID: 1656438

Abstract

Retinal degeneration in the mouse mutant, rd, was previously shown to be a disorder of cyclic nucleotide metabolism involving a deficiency in the activity of the rod photoreceptor cGMP phosphodiesterase (PDE). We have characterized the normal and rd PDE beta-subunit gene, and their respective transcripts, by PCR and direct sequence analysis. We show that the gene consists of at least 22 exons ranging in size from 48 base pairs to several hundred base pairs, covering greater than 25 kilobases. Within a 67-base-pair exon of the rd PDE beta-subunit gene, we identified a nonsense ochre mutation (a C----A transversion in codon 347) that truncates the normal gene product, eliminating more than one-half of the peptide chain, including the putative catalytic domain. The consequences of the truncation are consistent with the observed phenotypes in rd mice heterozygous and homozygous for the disorder. The nonsense mutation was also found in another related and in six unrelated strains displaying the rd phenotype, indicating that the rd allele arose from a single genetic event. The results strongly argue for the nonsense mutation being responsible for retinal degeneration in the rd mouse.

Full text

PDF
8322

Images in this article

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Baehr W., Champagne M. S., Lee A. K., Pittler S. J. Complete cDNA sequences of mouse rod photoreceptor cGMP phosphodiesterase alpha- and beta-subunits, and identification of beta'-, a putative beta-subunit isozyme produced by alternative splicing of the beta-subunit gene. FEBS Lett. 1991 Jan 14;278(1):107–114. doi: 10.1016/0014-5793(91)80095-k. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Beavo J. A. Multiple isozymes of cyclic nucleotide phosphodiesterase. Adv Second Messenger Phosphoprotein Res. 1988;22:1–38. [PubMed] [Google Scholar]
  3. Bowes C., Danciger M., Kozak C. A., Farber D. B. Isolation of a candidate cDNA for the gene causing retinal degeneration in the rd mouse. Proc Natl Acad Sci U S A. 1989 Dec;86(24):9722–9726. doi: 10.1073/pnas.86.24.9722. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Bowes C., Li T., Danciger M., Baxter L. C., Applebury M. L., Farber D. B. Retinal degeneration in the rd mouse is caused by a defect in the beta subunit of rod cGMP-phosphodiesterase. Nature. 1990 Oct 18;347(6294):677–680. doi: 10.1038/347677a0. [DOI] [PubMed] [Google Scholar]
  5. Brawerman G. mRNA decay: finding the right targets. Cell. 1989 Apr 7;57(1):9–10. doi: 10.1016/0092-8674(89)90166-9. [DOI] [PubMed] [Google Scholar]
  6. Carothers A. M., Urlaub G., Grunberger D., Chasin L. A. Mapping and characterization of mutations induced by benzo[a]pyrene diol epoxide at dihydrofolate reductase locus in CHO cells. Somat Cell Mol Genet. 1988 Mar;14(2):169–183. doi: 10.1007/BF01534402. [DOI] [PubMed] [Google Scholar]
  7. Carter-Dawson L. D., LaVail M. M., Sidman R. L. Differential effect of the rd mutation on rods and cones in the mouse retina. Invest Ophthalmol Vis Sci. 1978 Jun;17(6):489–498. [PubMed] [Google Scholar]
  8. Charbonneau H., Prusti R. K., LeTrong H., Sonnenburg W. K., Mullaney P. J., Walsh K. A., Beavo J. A. Identification of a noncatalytic cGMP-binding domain conserved in both the cGMP-stimulated and photoreceptor cyclic nucleotide phosphodiesterases. Proc Natl Acad Sci U S A. 1990 Jan;87(1):288–292. doi: 10.1073/pnas.87.1.288. [DOI] [PMC free article] [PubMed] [Google Scholar]
  9. Chen C. N., Denome S., Davis R. L. Molecular analysis of cDNA clones and the corresponding genomic coding sequences of the Drosophila dunce+ gene, the structural gene for cAMP phosphodiesterase. Proc Natl Acad Sci U S A. 1986 Dec;83(24):9313–9317. doi: 10.1073/pnas.83.24.9313. [DOI] [PMC free article] [PubMed] [Google Scholar]
  10. Chen C. N., Malone T., Beckendorf S. K., Davis R. L. At least two genes reside within a large intron of the dunce gene of Drosophila. Nature. 1987 Oct 22;329(6141):721–724. doi: 10.1038/329721a0. [DOI] [PubMed] [Google Scholar]
  11. Danciger M., Bowes C., Kozak C. A., LaVail M. M., Farber D. B. Fine mapping of a putative rd cDNA and its co-segregation with rd expression. Invest Ophthalmol Vis Sci. 1990 Aug;31(8):1427–1432. [PubMed] [Google Scholar]
  12. Danciger M., Kozak C. A., Li T., Applebury M. L., Farber D. B. Genetic mapping demonstrates that the alpha-subunit of retinal cGMP-phosphodiesterase is not the site of the rd mutation. Exp Eye Res. 1990 Aug;51(2):185–189. doi: 10.1016/0014-4835(90)90071-2. [DOI] [PubMed] [Google Scholar]
  13. Danciger M., Tuteja N., Kozak C. A., Farber D. B. The gene for the gamma-subunit of retinal cGMP-phosphodiesterase is on mouse chromosome 11. Exp Eye Res. 1989 Feb;48(2):303–308. doi: 10.1016/s0014-4835(89)80079-x. [DOI] [PubMed] [Google Scholar]
  14. Deterre P., Bigay J., Forquet F., Robert M., Chabre M. cGMP phosphodiesterase of retinal rods is regulated by two inhibitory subunits. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2424–2428. doi: 10.1073/pnas.85.8.2424. [DOI] [PMC free article] [PubMed] [Google Scholar]
  15. Doshi M., Voaden M. J., Arden G. B. Cyclic GMP in the retinas of normal mice and those heterozygous for early-onset photoreceptor dystrophy. Exp Eye Res. 1985 Jul;41(1):61–65. doi: 10.1016/0014-4835(85)90094-6. [DOI] [PubMed] [Google Scholar]
  16. Ennis P. D., Zemmour J., Salter R. D., Parham P. Rapid cloning of HLA-A,B cDNA by using the polymerase chain reaction: frequency and nature of errors produced in amplification. Proc Natl Acad Sci U S A. 1990 Apr;87(7):2833–2837. doi: 10.1073/pnas.87.7.2833. [DOI] [PMC free article] [PubMed] [Google Scholar]
  17. Farber D. B., Lolley R. N. Cyclic guanosine monophosphate: elevation in degenerating photoreceptor cells of the C3H mouse retina. Science. 1974 Nov 1;186(4162):449–451. doi: 10.1126/science.186.4162.449. [DOI] [PubMed] [Google Scholar]
  18. Farber D. B., Park S., Yamashita C. Cyclic GMP-phosphodiesterase of rd retina: biosynthesis and content. Exp Eye Res. 1988 Mar;46(3):363–374. doi: 10.1016/s0014-4835(88)80026-5. [DOI] [PubMed] [Google Scholar]
  19. Ferrendelli J. A., Cohen A. I. The effects of light and dark adaptation on the levels of cyclic nucleotides in retinas of mice heterozygous for a gene for photoreceptor dystrophy. Biochem Biophys Res Commun. 1976 Nov 22;73(2):421–427. doi: 10.1016/0006-291x(76)90724-5. [DOI] [PubMed] [Google Scholar]
  20. Frankel W. N., Stoye J. P., Taylor B. A., Coffin J. M. Genetic analysis of endogenous xenotropic murine leukemia viruses: association with two common mouse mutations and the viral restriction locus Fv-1. J Virol. 1989 Apr;63(4):1763–1774. doi: 10.1128/jvi.63.4.1763-1774.1989. [DOI] [PMC free article] [PubMed] [Google Scholar]
  21. Fung B. K., Young J. H., Yamane H. K., Griswold-Prenner I. Subunit stoichiometry of retinal rod cGMP phosphodiesterase. Biochemistry. 1990 Mar 20;29(11):2657–2664. doi: 10.1021/bi00463a006. [DOI] [PubMed] [Google Scholar]
  22. Keeler C. Retinal degeneration in the mouse is rodless retina. J Hered. 1966 Mar-Apr;57(2):47–50. doi: 10.1093/oxfordjournals.jhered.a107462. [DOI] [PubMed] [Google Scholar]
  23. LaVail M. M., Sidman R. L. C57BL-6J mice with inherited retinal degeneration. Arch Ophthalmol. 1974 May;91(5):394–400. doi: 10.1001/archopht.1974.03900060406015. [DOI] [PubMed] [Google Scholar]
  24. Lee R. H., Navon S. E., Brown B. M., Fung B. K., Lolley R. N. Characterization of a phosphodiesterase-immunoreactive polypeptide from rod photoreceptors of developing rd mouse retinas. Invest Ophthalmol Vis Sci. 1988 Jul;29(7):1021–1027. [PubMed] [Google Scholar]
  25. Li T. S., Volpp K., Applebury M. L. Bovine cone photoreceptor cGMP phosphodiesterase structure deduced from a cDNA clone. Proc Natl Acad Sci U S A. 1990 Jan;87(1):293–297. doi: 10.1073/pnas.87.1.293. [DOI] [PMC free article] [PubMed] [Google Scholar]
  26. Lipkin V. M., Khramtsov N. V., Vasilevskaya I. A., Atabekova N. V., Muradov K. G., Gubanov V. V., Li T., Johnston J. P., Volpp K. J., Applebury M. L. Beta-subunit of bovine rod photoreceptor cGMP phosphodiesterase. Comparison with the phosphodiesterase family. J Biol Chem. 1990 Aug 5;265(22):12955–12959. [PubMed] [Google Scholar]
  27. Low J. C. The corneal ERG of the heterozygous retinal degeneration mouse. Graefes Arch Clin Exp Ophthalmol. 1987;225(6):413–417. doi: 10.1007/BF02334167. [DOI] [PubMed] [Google Scholar]
  28. NOELL W. K. Differentiation, metabolic organization, and viability of the visual cell. AMA Arch Ophthalmol. 1958 Oct;60(4 Pt 2):702–733. doi: 10.1001/archopht.1958.00940080722016. [DOI] [PubMed] [Google Scholar]
  29. Oppert B., Cunnick J. M., Hurt D., Takemoto D. J. Identification of the retinal cyclic GMP phosphodiesterase inhibitory gamma-subunit interaction sites on the catalytic alpha-subunit. J Biol Chem. 1991 Sep 5;266(25):16607–16613. [PubMed] [Google Scholar]
  30. Orkin S. H., Kazazian H. H., Jr The mutation and polymorphism of the human beta-globin gene and its surrounding DNA. Annu Rev Genet. 1984;18:131–171. doi: 10.1146/annurev.ge.18.120184.001023. [DOI] [PubMed] [Google Scholar]
  31. Pittler S. J., Baehr W. The molecular genetics of retinal photoreceptor proteins involved in cGMP metabolism. Prog Clin Biol Res. 1991;362:33–66. [PubMed] [Google Scholar]
  32. SIDMAN R. L., GREEN M. C. RETINAL DEGENERATION IN THE MOUSE: LOCATION OF THE RD LOCUS IN LINKAGE GROUP XVII. J Hered. 1965 Jan-Feb;56:23–29. doi: 10.1093/oxfordjournals.jhered.a107364. [DOI] [PubMed] [Google Scholar]
  33. Staats J. Standardized Nomenclature for Inbred Strains of Mice: eighth listing. Cancer Res. 1985 Mar;45(3):945–977. [PubMed] [Google Scholar]
  34. Voaden M. J., Willmott N. J. Evidence for reduced binding of cyclic GMP to cyclic GMP phosphodiesterase in photoreceptors of mice heterozygous for the rd gene. Curr Eye Res. 1990 Jul;9(7):643–651. doi: 10.3109/02713689008999579. [DOI] [PubMed] [Google Scholar]
  35. Washburn T., O'Tousa J. E. Molecular defects in Drosophila rhodopsin mutants. J Biol Chem. 1989 Sep 15;264(26):15464–15466. [PubMed] [Google Scholar]
  36. al-Ubaidi M. R., Pittler S. J., Champagne M. S., Triantafyllos J. T., McGinnis J. F., Baehr W. Mouse opsin. Gene structure and molecular basis of multiple transcripts. J Biol Chem. 1990 Nov 25;265(33):20563–20569. [PubMed] [Google Scholar]

Articles from Proceedings of the National Academy of Sciences of the United States of America are provided here courtesy of National Academy of Sciences

RESOURCES